Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Varroa_20destructor_20[genbank_20GCA_5F000181155.2_202017-05-09] 20,448 sequences; 331,927,360 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq19000 100 6e-16 seq1697 96.9 7e-15 seq19295 93.3 9e-14 seq2175 93.3 9e-14 seq17726 91.5 3e-13 seq19813 89.7 1e-12 seq19781 89.7 1e-12 seq19297 89.7 1e-12 seq5985 89.7 1e-12 seq1640 89.7 1e-12 seq18955 84.2 4e-11 >seq19000 Length=26993 Score = 100 bits (110), Expect = 6e-16 Identities = 69/78 (88%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 142049 GCATGTCTCTGTGGCGCAATGGACAGCGCGTTGGACTTCTAATCCAAAGGTTGCGGGTTC 142108 || |||| |||| ||||| |||| ||||||||||||||||||||||||||| |||||||| Sbjct 14468 GCCTGTCCCTGTAGCGCAGTGGATAGCGCGTTGGACTTCTAATCCAAAGGTCGCGGGTTC 14527 Query 142109 GACCCCCGCCAGAGACGC 142126 ||| |||||||| || || Sbjct 14528 GACTCCCGCCAGGGATGC 14545 >seq1697 Length=70922 Score = 96.9 bits (106), Expect = 7e-15 Identities = 64/71 (90%), Gaps = 0/71 (0%) Strand=Plus/Plus Query 142053 GTCTCTGTGGCGCAATGGACAGCGCGTTGGACTTCTAATCCAAAGGTTGCGGGTTCGACC 142112 ||| |||| ||||| |||| ||||||||||||||||||||||||||| ||||||||||| Sbjct 20302 GTCCCTGTAGCGCAGTGGATAGCGCGTTGGACTTCTAATCCAAAGGTCGCGGGTTCGACT 20361 Query 142113 CCCGCCAGAGA 142123 |||||||| || Sbjct 20362 CCCGCCAGGGA 20372 >seq19295 Length=205138 Score = 93.3 bits (102), Expect = 9e-14 Identities = 184/270 (68%), Gaps = 2/270 (1%) Strand=Plus/Minus Query 218587 GATGGCCTCAAGCCATCGCAGCGTAAGATCCTCTTTGCCGCATTCAAGCGGAACCTGGTT 218646 ||||| || || ||| ||||||||| | | || || |||||| ||||| Sbjct 36985 GATGGTCTTAAACCAGGACAGCGTAAGGTATTGTTCACCTGCTTCAAGAGGAACGATAAG 36926 Query 218647 CAAGAAATTAAGGTCGCTCAGTTTTCTGGTTATGTATCCGAAATTTCTGGCTACCATCAC 218706 | |||| | || || || ||| || |||| | ||| | ||||| || | || || ||| Sbjct 36925 CGAGAAGTCAAAGTTGCCCAGCTTGCTGGATCCGTAGCAGAAATGTCGGCGTATCACCAC 36866 Query 218707 GGTGAGCAGAGTCTGCAGGGTGCCATT-GTAGGCATGGCACAGGACTATGTGGGCAGTAA 218765 ||||| ||| || | | || || | || | |||| || | | ||||||||||| Sbjct 36865 GGTGAACAGTCGCTA-ATGATGACAATCGTCAACTTGGCCCAAAATTTCGTGGGCAGTAA 36807 Query 218766 CAACATGAACTTGCTGCTCCCCAACGGTCAGTTTGGTTCTCGTCTATTGGGTGGAAAGGA 218825 ||||| ||| | |||| |||| |||||| || ||| |||| || |||||| || || Sbjct 36806 TAACATCAACCTACTGCAGCCCATCGGTCAATTCGGTACTCGGCTGCAGGGTGGCAAAGA 36747 Query 218826 TAGTGCTTCTGCCAGGTATATCTTTACAAA 218855 | ||| || ||||||| || || ||||| Sbjct 36746 TTCTGCGTCACCCAGGTACATTTTCACAAA 36717 >seq2175 Length=83047 Score = 93.3 bits (102), Expect = 9e-14 Identities = 65/74 (88%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 142050 CATGTCTCTGTGGCGCAATGGACAGCGCGTTGGACTTCTAATCCAAAGGTTGCGGGTTCG 142109 |||||| |||| ||||| |||| |||||||||||||||||||||||||| ||||||||| Sbjct 56985 CATGTCCCTGTAGCGCAGTGGATAGCGCGTTGGACTTCTAATCCAAAGGCCGCGGGTTCG 57044 Query 142110 ACCCCCGCCAGAGA 142123 | |||||||| || Sbjct 57045 ATTCCCGCCAGGGA 57058 >seq17726 Length=138386 Score = 91.5 bits (100), Expect = 3e-13 Identities = 65/75 (87%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 142501 ATAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCG 142560 || |||||| |||||||||||||||||| ||||||||||||| ||||||||||||| Sbjct 116586 ATCGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCG 116527 Query 142561 AGCCCCACATCGGGC 142575 |||||||| | |||| Sbjct 116526 AGCCCCACGTTGGGC 116512 >seq19813 Length=88314 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||| ||||||||||||| |||||||||||||||| Sbjct 61701 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 61760 Query 142564 CCCACATCGGGC 142575 ||||| | |||| Sbjct 61761 CCCACGTTGGGC 61772 >seq19781 Length=225169 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||| ||||||||||||| |||||||||||||||| Sbjct 18939 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 18998 Query 142564 CCCACATCGGGC 142575 ||||| | |||| Sbjct 18999 CCCACGTTGGGC 19010 >seq19297 Length=16901 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||| ||||||||||||| |||||||||||||||| Sbjct 5103 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 5044 Query 142564 CCCACATCGGGC 142575 ||||| | |||| Sbjct 5043 CCCACGTTGGGC 5032 >seq5985 Length=300413 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||| ||||||||||||| |||||||||||||||| Sbjct 85468 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 85409 Query 142564 CCCACATCGGGC 142575 ||||| | |||| Sbjct 85408 CCCACGTTGGGC 85397 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||| ||||||||||||| |||||||||||||||| Sbjct 86637 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 86578 Query 142564 CCCACATCGGGC 142575 ||||| | |||| Sbjct 86577 CCCACGTTGGGC 86566 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||| ||||||||||||| |||||||||||||||| Sbjct 88406 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 88347 Query 142564 CCCACATCGGGC 142575 ||||| | |||| Sbjct 88346 CCCACGTTGGGC 88335 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||| ||||||||||||| |||||||||||||||| Sbjct 88988 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 88929 Query 142564 CCCACATCGGGC 142575 ||||| | |||| Sbjct 88928 CCCACGTTGGGC 88917 >seq1640 Length=50012 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||| ||||||||||||| |||||||||||||||| Sbjct 41329 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 41270 Query 142564 CCCACATCGGGC 142575 ||||| | |||| Sbjct 41269 CCCACGTTGGGC 41258 >seq18955 Length=66556 Score = 84.2 bits (92), Expect = 4e-11 Identities = 61/71 (86%), Gaps = 0/71 (0%) Strand=Plus/Minus Query 142053 GTCTCTGTGGCGCAATGGACAGCGCGTTGGACTTCTAATCCAAAGGTTGCGGGTTCGACC 142112 ||| |||| ||||| |||| |||||||| ||||||||||| |||||| |||||||| || Sbjct 55171 GTCCCTGTAGCGCAGTGGATAGCGCGTTAGACTTCTAATCTAAAGGTCGCGGGTTCAACT 55112 Query 142113 CCCGCCAGAGA 142123 |||||||| || Sbjct 55111 CCCGCCAGGGA 55101 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027567517036768