Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Varroa_20destructor_20[genbank_20GCA_5F000181155.2_202017-05-09]
20,448 sequences; 331,927,360 total letters
Query= NC_008603.1
Length=321240
Score E
Sequences producing significant alignments: (Bits) Value
seq19000 100 6e-16
seq1697 96.9 7e-15
seq19295 93.3 9e-14
seq2175 93.3 9e-14
seq17726 91.5 3e-13
seq19813 89.7 1e-12
seq19781 89.7 1e-12
seq19297 89.7 1e-12
seq5985 89.7 1e-12
seq1640 89.7 1e-12
seq18955 84.2 4e-11
>seq19000
Length=26993
Score = 100 bits (110), Expect = 6e-16
Identities = 69/78 (88%), Gaps = 0/78 (0%)
Strand=Plus/Plus
Query 142049 GCATGTCTCTGTGGCGCAATGGACAGCGCGTTGGACTTCTAATCCAAAGGTTGCGGGTTC 142108
|| |||| |||| ||||| |||| ||||||||||||||||||||||||||| ||||||||
Sbjct 14468 GCCTGTCCCTGTAGCGCAGTGGATAGCGCGTTGGACTTCTAATCCAAAGGTCGCGGGTTC 14527
Query 142109 GACCCCCGCCAGAGACGC 142126
||| |||||||| || ||
Sbjct 14528 GACTCCCGCCAGGGATGC 14545
>seq1697
Length=70922
Score = 96.9 bits (106), Expect = 7e-15
Identities = 64/71 (90%), Gaps = 0/71 (0%)
Strand=Plus/Plus
Query 142053 GTCTCTGTGGCGCAATGGACAGCGCGTTGGACTTCTAATCCAAAGGTTGCGGGTTCGACC 142112
||| |||| ||||| |||| ||||||||||||||||||||||||||| |||||||||||
Sbjct 20302 GTCCCTGTAGCGCAGTGGATAGCGCGTTGGACTTCTAATCCAAAGGTCGCGGGTTCGACT 20361
Query 142113 CCCGCCAGAGA 142123
|||||||| ||
Sbjct 20362 CCCGCCAGGGA 20372
>seq19295
Length=205138
Score = 93.3 bits (102), Expect = 9e-14
Identities = 184/270 (68%), Gaps = 2/270 (1%)
Strand=Plus/Minus
Query 218587 GATGGCCTCAAGCCATCGCAGCGTAAGATCCTCTTTGCCGCATTCAAGCGGAACCTGGTT 218646
||||| || || ||| ||||||||| | | || || |||||| |||||
Sbjct 36985 GATGGTCTTAAACCAGGACAGCGTAAGGTATTGTTCACCTGCTTCAAGAGGAACGATAAG 36926
Query 218647 CAAGAAATTAAGGTCGCTCAGTTTTCTGGTTATGTATCCGAAATTTCTGGCTACCATCAC 218706
| |||| | || || || ||| || |||| | ||| | ||||| || | || || |||
Sbjct 36925 CGAGAAGTCAAAGTTGCCCAGCTTGCTGGATCCGTAGCAGAAATGTCGGCGTATCACCAC 36866
Query 218707 GGTGAGCAGAGTCTGCAGGGTGCCATT-GTAGGCATGGCACAGGACTATGTGGGCAGTAA 218765
||||| ||| || | | || || | || | |||| || | | |||||||||||
Sbjct 36865 GGTGAACAGTCGCTA-ATGATGACAATCGTCAACTTGGCCCAAAATTTCGTGGGCAGTAA 36807
Query 218766 CAACATGAACTTGCTGCTCCCCAACGGTCAGTTTGGTTCTCGTCTATTGGGTGGAAAGGA 218825
||||| ||| | |||| |||| |||||| || ||| |||| || |||||| || ||
Sbjct 36806 TAACATCAACCTACTGCAGCCCATCGGTCAATTCGGTACTCGGCTGCAGGGTGGCAAAGA 36747
Query 218826 TAGTGCTTCTGCCAGGTATATCTTTACAAA 218855
| ||| || ||||||| || || |||||
Sbjct 36746 TTCTGCGTCACCCAGGTACATTTTCACAAA 36717
>seq2175
Length=83047
Score = 93.3 bits (102), Expect = 9e-14
Identities = 65/74 (88%), Gaps = 0/74 (0%)
Strand=Plus/Plus
Query 142050 CATGTCTCTGTGGCGCAATGGACAGCGCGTTGGACTTCTAATCCAAAGGTTGCGGGTTCG 142109
|||||| |||| ||||| |||| |||||||||||||||||||||||||| |||||||||
Sbjct 56985 CATGTCCCTGTAGCGCAGTGGATAGCGCGTTGGACTTCTAATCCAAAGGCCGCGGGTTCG 57044
Query 142110 ACCCCCGCCAGAGA 142123
| |||||||| ||
Sbjct 57045 ATTCCCGCCAGGGA 57058
>seq17726
Length=138386
Score = 91.5 bits (100), Expect = 3e-13
Identities = 65/75 (87%), Gaps = 0/75 (0%)
Strand=Plus/Minus
Query 142501 ATAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCG 142560
|| |||||| |||||||||||||||||| ||||||||||||| |||||||||||||
Sbjct 116586 ATCGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCG 116527
Query 142561 AGCCCCACATCGGGC 142575
|||||||| | ||||
Sbjct 116526 AGCCCCACGTTGGGC 116512
>seq19813
Length=88314
Score = 89.7 bits (98), Expect = 1e-12
Identities = 63/72 (88%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563
|||||| |||||||||||||||||| ||||||||||||| ||||||||||||||||
Sbjct 61701 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 61760
Query 142564 CCCACATCGGGC 142575
||||| | ||||
Sbjct 61761 CCCACGTTGGGC 61772
>seq19781
Length=225169
Score = 89.7 bits (98), Expect = 1e-12
Identities = 63/72 (88%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563
|||||| |||||||||||||||||| ||||||||||||| ||||||||||||||||
Sbjct 18939 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 18998
Query 142564 CCCACATCGGGC 142575
||||| | ||||
Sbjct 18999 CCCACGTTGGGC 19010
>seq19297
Length=16901
Score = 89.7 bits (98), Expect = 1e-12
Identities = 63/72 (88%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563
|||||| |||||||||||||||||| ||||||||||||| ||||||||||||||||
Sbjct 5103 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 5044
Query 142564 CCCACATCGGGC 142575
||||| | ||||
Sbjct 5043 CCCACGTTGGGC 5032
>seq5985
Length=300413
Score = 89.7 bits (98), Expect = 1e-12
Identities = 63/72 (88%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563
|||||| |||||||||||||||||| ||||||||||||| ||||||||||||||||
Sbjct 85468 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 85409
Query 142564 CCCACATCGGGC 142575
||||| | ||||
Sbjct 85408 CCCACGTTGGGC 85397
Score = 89.7 bits (98), Expect = 1e-12
Identities = 63/72 (88%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563
|||||| |||||||||||||||||| ||||||||||||| ||||||||||||||||
Sbjct 86637 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 86578
Query 142564 CCCACATCGGGC 142575
||||| | ||||
Sbjct 86577 CCCACGTTGGGC 86566
Score = 89.7 bits (98), Expect = 1e-12
Identities = 63/72 (88%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563
|||||| |||||||||||||||||| ||||||||||||| ||||||||||||||||
Sbjct 88406 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 88347
Query 142564 CCCACATCGGGC 142575
||||| | ||||
Sbjct 88346 CCCACGTTGGGC 88335
Score = 89.7 bits (98), Expect = 1e-12
Identities = 63/72 (88%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563
|||||| |||||||||||||||||| ||||||||||||| ||||||||||||||||
Sbjct 88988 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 88929
Query 142564 CCCACATCGGGC 142575
||||| | ||||
Sbjct 88928 CCCACGTTGGGC 88917
>seq1640
Length=50012
Score = 89.7 bits (98), Expect = 1e-12
Identities = 63/72 (88%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563
|||||| |||||||||||||||||| ||||||||||||| ||||||||||||||||
Sbjct 41329 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 41270
Query 142564 CCCACATCGGGC 142575
||||| | ||||
Sbjct 41269 CCCACGTTGGGC 41258
>seq18955
Length=66556
Score = 84.2 bits (92), Expect = 4e-11
Identities = 61/71 (86%), Gaps = 0/71 (0%)
Strand=Plus/Minus
Query 142053 GTCTCTGTGGCGCAATGGACAGCGCGTTGGACTTCTAATCCAAAGGTTGCGGGTTCGACC 142112
||| |||| ||||| |||| |||||||| ||||||||||| |||||| |||||||| ||
Sbjct 55171 GTCCCTGTAGCGCAGTGGATAGCGCGTTAGACTTCTAATCTAAAGGTCGCGGGTTCAACT 55112
Query 142113 CCCGCCAGAGA 142123
|||||||| ||
Sbjct 55111 CCCGCCAGGGA 55101
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1027567517036768
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |