Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Varroa_20destructor_20[genbank_20GCA_5F000181155.2_202017-05-09] 20,448 sequences; 331,927,360 total letters Query= NC_008725.1 Length=111953 Score E Sequences producing significant alignments: (Bits) Value seq19980 89.7 4e-13 seq7231 84.2 2e-11 >seq19980 Length=299602 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 ||||| || ||| | || || | || || |||||||| ||| |||| ||| | | Sbjct 144508 ATGCAGATCTTTGTAAAGACTCTCACCGGGAAAACCATCACCCTGGAGGTTGAACCTTCT 144567 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || | | || ||||| ||||| || ||||||||| | || | || Sbjct 144568 GACACAATTGAGAATGTTAAGGCGAAAATCCAAGACAAAGAGGGTATCCCCCCTGATCAG 144627 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 ||||| || |||||||| || ||||||||||||||| | ||| | | || |||||| Sbjct 144628 CAGAGGCTAATCTTTGCCGGTAAACAACTAGAAGATGGACGTACTCTTTCAGACTACAAT 144687 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGG 22060 || || ||||| || ||||||||| | ||| | || | || ||||| Sbjct 144688 ATCCAAAAGGAGTCCACTCTTCATCTTGTACTTCGACTTCGTGGAGG 144734 Score = 84.2 bits (92), Expect = 2e-11 Identities = 156/229 (68%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 21832 AAATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCG 21891 |||||||||| ||| | ||||| ||||| || || || || ||| | || ||| | Sbjct 144278 AAATGCAAATTTTTGTGAAAACTTTAACCGGAAAGACTATCACCCTTGAGGTGGAGTCTT 144337 Query 21892 CAGAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACC 21951 | || || | | || | ||| || ||| ||||| ||||| | || | ||| Sbjct 144338 CTGATACAATCGAAAATGTCAAGGCGAAGATTCAAGATAAGGAGGGGATTCCCCCAGACC 144397 Query 21952 AACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACA 22011 | ||||| | ||||||||||| ||||| | ||||| | ||| | | ||||||| Sbjct 144398 AGCAGAGGTTAATCTTTGCTGGTAAACAGTTGGAAGACGGACGTACTCTTTCTGATTACA 144457 Query 22012 ATATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGG 22060 | || ||||| ||||| || |||||| | || || ||| | ||||| || Sbjct 144458 ACATCCAGAAAGAATCGACCCTTCATCTTGTCTTGCGTCTGCGAGGTGG 144506 >seq7231 Length=219762 Score = 84.2 bits (92), Expect = 2e-11 Identities = 156/229 (68%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 21833 AATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGC 21892 ||||||||| || |||| || || || || |||||||| ||| | || || || | Sbjct 92384 AATGCAAATTTTCGTTAAGACGTTGACCGGAAAAACCATAACCCTTGAGGTTGAGCCCTC 92325 Query 21893 AGAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCA 21952 || || | | | | ||| ||||||| ||||| || || | || | || Sbjct 92324 GGATACCATCGAAAACGTAAAGGCAAAAATTCAGGATAAGGAAGGCATCCCCCCTGATCA 92265 Query 21953 ACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAA 22012 ||| | ||||| || ||||| |||||||| || ||| | || || |||||||||| Sbjct 92264 GCAGCGTCTTATATTCGCTGGAAAACAACTCGAGGATGGACGTACCCTGTCCGATTACAA 92205 Query 22013 TATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGGA 22061 ||||||||| ||||| ||||| || |||| | || | || |||||| Sbjct 92204 TATTCAGAAAGAATCAACTCTGCACTTGGTGCTGCGCCTTCGTGGAGGA 92156 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 358035551718592