Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Varroa_20destructor_20[genbank_20GCA_5F000181155.2_202017-05-09] 20,448 sequences; 331,927,360 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq19464 127 4e-24 >seq19464 Length=44290 Score = 127 bits (140), Expect = 4e-24 Identities = 248/364 (68%), Gaps = 2/364 (1%) Strand=Plus/Minus Query 42501 GAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCATAGAGAACGTGCACTCTGAGGTGTAC 42560 |||||||| || |||||||| || |||||| || || || | || || || |||| Sbjct 12678 GAGGCGCGTTGTTTCTACGGTTTTCAGATAATGATGGAAAATATTCATTCAGAAATGTAT 12619 Query 42561 GCCAAACTGCTCAACACGTACATCCTGGATCCCGTCGAGCGTAACGGGCTGTTCAAGGCC 42620 | ||||| ||||| |||||| || || || ||| | | || ||| || Sbjct 12618 TCTCTTCTGCTAAACACATACATCACCGAGTCCACGGAACGTGATCGACTCTTCCGCGCA 12559 Query 42621 ATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACTGGGCGCTCAACTGGATCGAGAGT 42680 || ||||| ||||| ||||| ||||||||||| || ||||| | | ||||||| | Sbjct 12558 ATTGAGACAATGCCATGCATTAAGAAGAAGGCTGATTGGGCCTTAGAGTGGATCGCTAAC 12499 Query 42681 CCCGACGCAACGTTCGGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTC 42740 || || ||| ||| ||| | | || || || | || ||||| ||||| || ||| Sbjct 12498 GAGGAGGCTGCGTACGGTGAGCGTGTTGTGGCATTCGCTGCAGTCGAAGGCATTTTTTTC 12439 Query 42741 TCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAG-AAGGTGTCGATGCCCGGACTCAC 42799 || || || ||| | || |||||||| || || |||| || ||||| || ||||| Sbjct 12438 AGCGGGGCGTTTGCCGCTATTTTCTGGCTGAAAAAGCGAGGTATC-ATGCCTGGCCTCAC 12380 Query 42800 CTTCTCGAACGAACTCATCAGCAGGGACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCT 42859 |||| || || |||||| | ||||| || |||| | ||||| ||||| || | Sbjct 12379 CTTCAGCAATGAGCTCATCTCACGTGACGAAGGTATGCACACAGACTTCGCCTGTCTGAT 12320 Query 42860 GTTC 42863 |||| Sbjct 12319 GTTC 12316 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944097826900480