Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Varroa_20destructor_20[genbank_20GCA_5F000181155.2_202017-05-09] 20,448 sequences; 331,927,360 total letters Query= NC_009333.1 Length=137969 Score E Sequences producing significant alignments: (Bits) Value seq17800 86.0 6e-12 >seq17800 Length=133550 Score = 86.0 bits (94), Expect = 6e-12 Identities = 203/304 (67%), Gaps = 2/304 (1%) Strand=Plus/Plus Query 20281 GGCAATGTTAAAAGGAACTCCCAAACCCATGTCTCCCGACCTCTGATACAGCTGACAGGA 20340 |||||| || || ||||| || | |||||||| | | ||| ||||| ||||| || Sbjct 12244 GGCAATATTGAACGGAACACCGAGGCCCATGTCGGCGCTGCGCTGGTACAGTTGACATGA 12303 Query 20341 AAGCTCACCGTCAGCTACATAAAATTGACATAACAAGTGACAGGGCGGAAGCGCCATCAA 20400 | ||||| | || || ||||||||| | ||||||||||||||||||||||| Sbjct 12304 GACTTCACCTTTGGCGACGTAAAATTGAGCCAGACAGTGACAGGGCGGAAGCGCCATCTT 12363 Query 20401 CGACAAGTCCGCCGGGTTCCACGCACACATAATGATTCTTCTATCGTGCGGATTATTTTT 20460 | ||| |||| ||||| || | | ||| || | || |||| ||||| | || Sbjct 12364 TGGCAAATCCGAGACATTCCATGCCGATAGAATAATACGTCGGTCGTTTGGATTGCTCTT 12423 Query 20461 TATTAAATCCACAATGTACGACAAT-TGGTCAAACCCCTGGCCTGTATAGTCAGCATCCG 20519 || | | || | | |||| || |||| |||||| || || || |||| | Sbjct 12424 TAGTGTGCTGATGATCTGAG-CAATCTGATCAACTCCCTGGTTCGTGTAATCGGCATGCA 12482 Query 20520 CGTCCACGTACGCCGCCCCAAAGTGCCTCCACTGGAAACCGTAAACAGGTCCCAAATCCC 20579 | |||| | || || || || | ||||||||| ||||| || || || ||||| | Sbjct 12483 TATTTGTGTACTCAGCACCGAAATGGCGCCACTGGAAGCCGTACACGGGGCCTAAATCGC 12542 Query 20580 CCTC 20583 | || Sbjct 12543 CTTC 12546 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 441259985112320