Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Varroa_20destructor_20[genbank_20GCA_5F000181155.2_202017-05-09] 20,448 sequences; 331,927,360 total letters Query= NC_009603.1 Length=46365 Score E Sequences producing significant alignments: (Bits) Value seq19061 289 8e-74 >seq19061 Length=15585 Score = 289 bits (320), Expect = 8e-74 Identities = 293/376 (78%), Gaps = 4/376 (1%) Strand=Plus/Minus Query 11006 ATGGCAGGGGAGACCGTGATCACGGTCGTGGGGAACCTCACTGCAGACCCTGAGCTGCGT 11065 |||||||| || ||||| ||||| || || || ||| | || || || || |||||||| Sbjct 14215 ATGGCAGGCGACACCGTCATCACTGTGGTCGGCAACTTGACGGCCGATCCCGAGCTGCGG 14156 Query 11066 TACACGCAGAACGG-GCTGCCGGTGGCGAACTTCACCATCGCATCGACGCCGCGCACCTT 11124 | ||| | || ||| || |||| | |||||||||||| |||| |||||||| || ||||| Sbjct 14155 TTCACACCGACCGGCGCGGCCG-TCGCGAACTTCACCGTCGCGTCGACGCCTCGGACCTT 14097 Query 11125 CGACCGTCAGGCGAACGAGTGGAAGGACGGCGAAGCGCTGTTCCTCCG-TGCGTCCGTGT 11183 |||||||||| | |||||||||||||||||||||||||||||| | || ||| | | | Sbjct 14096 CGACCGTCAGACCAACGAGTGGAAGGACGGCGAAGCGCTGTTCTTGCGCTGCAACA-TCT 14038 Query 11184 GGCGCGAGTTCGCGGAGCACGTGGCGGGTTCGCTGACCAAGGGCATGCGGGTCATCGCAT 11243 |||||||| ||||||| ||||||| | |||||||||| |||| ||| ||||||| Sbjct 14037 GGCGCGAGGCCGCGGAGAACGTGGCCGAGTCGCTGACCAGGGGCGCGCGCGTCATCGTGA 13978 Query 11244 CCGGACGCCTGAAGCAGCGCTCCTACCAGGACCGCGAGGGCAACAACCGCACCGCGATCG 11303 |||| | || ||||||||||| ||| || |||||||||| | || || |||| ||| Sbjct 13977 CCGGCAGGCTCAAGCAGCGCTCGTACGAGACCCGCGAGGGCGAGAAGCGGACCGTCGTCG 13918 Query 11304 AGCTCGAGGTGGACGAGATCGGCCCGAGCCTCCGCTACGCGACGGCGCAGGTCACCCGGG 11363 ||||||| || ||||||||||| || ||| |||||| | || ||| | || | ||| | Sbjct 13917 AGCTCGAAGTCGACGAGATCGGGCCTTCCCTGCGCTACTCCACCGCGAAAGTGAACCGCG 13858 Query 11364 CCGCCCGCCGTGACGG 11379 |||| ||| | | ||| Sbjct 13857 CCGCGCGCGGCGGCGG 13842 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 148210402809152