Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Varroa_20destructor_20[genbank_20GCA_5F000181155.2_202017-05-09] 20,448 sequences; 331,927,360 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq19295 84.2 5e-11 >seq19295 Length=205138 Score = 84.2 bits (92), Expect = 5e-11 Identities = 333/513 (65%), Gaps = 12/513 (2%) Strand=Plus/Plus Query 297220 AATCAATCGCTTCACGTTGTCTACGATGTCTTTTGGATTGTAACTAGGGATATTAGTCGA 297279 ||| || || || | ||| | || || ||| ||||||||| | || | ||||| Sbjct 36503 AATTAAACGTTTGATGTTTGCGACAATCTCTCGAGGATTGTAATTTGGCACCTTAGTGCT 36562 Query 297280 CCAACCGGTACCGATTCCACTCGAACCATTCACCAGAATGCTCGGAATAACAGGCACATA 297339 ||| || || ||||| || | ||| || || | || | ||||||| ||||| ||| Sbjct 36563 CCAGCCCGTGCCGATACCTTCAGCACCGTTAACTAAGATCATTGGAATAATAGGCAGATA 36622 Query 297340 ATACTCTGGTTCGATCTTGTCACCGTCATCATACAGATATTTCAGAAGATTATCGTCCGT 297399 | || ||||| ||||| | |||||| | ||||| || || | ||| |||| Sbjct 36623 GAAGTCGGGTTCAATCTTCTGGTTATCATCAAAGAGATAGTTGAGCACGGGATCATCCGA 36682 Query 297400 ATCGACGAAA-ACCTGTCGAGTCTGAGGGTTCAGTTTTGTGAAAATATATCGTGCACTCG 297458 | | |||| | ||| | | ||| | |||||||||||||| || | | || Sbjct 36683 AGT-AGGAAATAGACTTCGTGCCAATGGGCTGAGTTTTGTGAAAATGTACCTGGGTGACG 36741 Query 297459 CGTGATCCTTACCACCCTGCAATCTCGAACCGAACTGGCCCTCCGGCAACAACCAGTTGA 297518 | ||| || |||||||||| | | |||||| || || ||| || ||||| Sbjct 36742 CAGAATCTTTGCCACCCTGCAGCCGAGTACCGAATTGACCGATGGGCTGCAGTAGGTTGA 36801 Query 297519 TGTTATTGCTTCCGACATAATCCTGTGCAAGGTTCACGATGGTC--CCTTGCAGAGATGC 297576 ||||||| || || || ||| || || | ||| ||||| ||| | || || || Sbjct 36802 TGTTATTACTGCCCACGAAATTTTGGGCCAAGTTGACGATTGTCATCATT--AGCGACTG 36859 Query 297577 TTCGCCATGGTGATA-GGCGCTATGCTCTGCAACGTAACCGCTGAACTGTGCAACCTTCA 297635 ||| || |||||||| | || || ||||| ||| | || | ||| ||||| || | Sbjct 36860 TTCACCGTGGTGATACGCCGACAT-TTCTGCTACGGATCCAGCAAGCTGGGCAACTTTGA 36918 Query 297636 CGTCGGTCGTCAAATTGCGCTTGAA--AGCTGAATATATCACTTTCCGTTGAGAAGGTTT 297693 | || | | || | |||||| || |||| | || || || || || ||||| Sbjct 36919 CTTCTCGCTTATCGTTCCTCTTGAAGCAGGTGAACA-AT-ACCTTACGCTGTCCTGGTTT 36976 Query 297694 GAAACCATCAACGACCGACGGAATGCTTCGTTC 297726 | |||||||| | ||||||||| |||||| Sbjct 36977 AAGACCATCAATTAACGACGGAATTGATCGTTC 37009 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102591056468800