Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Varroa_20destructor_20[genbank_20GCA_5F000181155.2_202017-05-09]
20,448 sequences; 331,927,360 total letters
Query= NC_009899.1
Length=344691
Score E
Sequences producing significant alignments: (Bits) Value
seq19295 84.2 5e-11
>seq19295
Length=205138
Score = 84.2 bits (92), Expect = 5e-11
Identities = 333/513 (65%), Gaps = 12/513 (2%)
Strand=Plus/Plus
Query 297220 AATCAATCGCTTCACGTTGTCTACGATGTCTTTTGGATTGTAACTAGGGATATTAGTCGA 297279
||| || || || | ||| | || || ||| ||||||||| | || | |||||
Sbjct 36503 AATTAAACGTTTGATGTTTGCGACAATCTCTCGAGGATTGTAATTTGGCACCTTAGTGCT 36562
Query 297280 CCAACCGGTACCGATTCCACTCGAACCATTCACCAGAATGCTCGGAATAACAGGCACATA 297339
||| || || ||||| || | ||| || || | || | ||||||| ||||| |||
Sbjct 36563 CCAGCCCGTGCCGATACCTTCAGCACCGTTAACTAAGATCATTGGAATAATAGGCAGATA 36622
Query 297340 ATACTCTGGTTCGATCTTGTCACCGTCATCATACAGATATTTCAGAAGATTATCGTCCGT 297399
| || ||||| ||||| | |||||| | ||||| || || | ||| ||||
Sbjct 36623 GAAGTCGGGTTCAATCTTCTGGTTATCATCAAAGAGATAGTTGAGCACGGGATCATCCGA 36682
Query 297400 ATCGACGAAA-ACCTGTCGAGTCTGAGGGTTCAGTTTTGTGAAAATATATCGTGCACTCG 297458
| | |||| | ||| | | ||| | |||||||||||||| || | | ||
Sbjct 36683 AGT-AGGAAATAGACTTCGTGCCAATGGGCTGAGTTTTGTGAAAATGTACCTGGGTGACG 36741
Query 297459 CGTGATCCTTACCACCCTGCAATCTCGAACCGAACTGGCCCTCCGGCAACAACCAGTTGA 297518
| ||| || |||||||||| | | |||||| || || ||| || |||||
Sbjct 36742 CAGAATCTTTGCCACCCTGCAGCCGAGTACCGAATTGACCGATGGGCTGCAGTAGGTTGA 36801
Query 297519 TGTTATTGCTTCCGACATAATCCTGTGCAAGGTTCACGATGGTC--CCTTGCAGAGATGC 297576
||||||| || || || ||| || || | ||| ||||| ||| | || || ||
Sbjct 36802 TGTTATTACTGCCCACGAAATTTTGGGCCAAGTTGACGATTGTCATCATT--AGCGACTG 36859
Query 297577 TTCGCCATGGTGATA-GGCGCTATGCTCTGCAACGTAACCGCTGAACTGTGCAACCTTCA 297635
||| || |||||||| | || || ||||| ||| | || | ||| ||||| || |
Sbjct 36860 TTCACCGTGGTGATACGCCGACAT-TTCTGCTACGGATCCAGCAAGCTGGGCAACTTTGA 36918
Query 297636 CGTCGGTCGTCAAATTGCGCTTGAA--AGCTGAATATATCACTTTCCGTTGAGAAGGTTT 297693
| || | | || | |||||| || |||| | || || || || || |||||
Sbjct 36919 CTTCTCGCTTATCGTTCCTCTTGAAGCAGGTGAACA-AT-ACCTTACGCTGTCCTGGTTT 36976
Query 297694 GAAACCATCAACGACCGACGGAATGCTTCGTTC 297726
| |||||||| | ||||||||| ||||||
Sbjct 36977 AAGACCATCAATTAACGACGGAATTGATCGTTC 37009
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1102591056468800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |