Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Varroa_20destructor_20[genbank_20GCA_5F000181155.2_202017-05-09] 20,448 sequences; 331,927,360 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq7231 118 1e-21 seq19021 98.7 1e-15 seq18241 98.7 1e-15 seq13788 98.7 1e-15 seq19000 93.3 5e-14 seq694 91.5 2e-13 seq19980 89.7 6e-13 seq17726 89.7 6e-13 seq4398 89.7 6e-13 seq19065 87.8 2e-12 seq19806 86.0 7e-12 seq2750 86.0 7e-12 >seq7231 Length=219762 Score = 118 bits (130), Expect = 1e-21 Identities = 155/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 41994 CGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCG 42053 ||||| || | ||||| ||| ||||||||||||||| ||||| | || || || || Sbjct 93684 CGCAAGACGAGATGCAGTGTCGACTCCTTTTGAATATTATAATCTGAGAGGGTACGGCCG 93743 Query 42054 TCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTG 42113 || || || ||||| ||||| || || || || ||||| || | || | || ||| || Sbjct 93744 TCTTCCAGTTGCTTGCCAGCAAAGATCAGACGTTGCTGATCCGGAGGGATGCCCTCTTTA 93803 Query 42114 TCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATG 42173 ||| ||||||| || | | | | || ||||| | ||| || || | |||||| Sbjct 93804 TCCTGGATTTTTGCCTTCACATTTTCAATTGTATCGCTGGGTTCAACTTCAAGGGTGATG 93863 Query 42174 GTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 ||||| || || |||||||| |||||||| ||||| Sbjct 93864 GTTTTTCCAGTGAGCGTCTTCACAAAGATCTGCAT 93898 Score = 109 bits (120), Expect = 6e-19 Identities = 143/197 (73%), Gaps = 6/197 (3%) Strand=Plus/Plus Query 42018 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 42077 ||||| || ||||||||||| | || || || |||| ||||||||||| |||||||| Sbjct 93936 TCCTTCTGTATATTGTAATCGGAGAGTGTGCGACCGTCCTCTAGCTGCTTGCCAGCGAAA 93995 Query 42078 ATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTC 42137 || || |||||||| || | ||| | | || || ||| ||| ||| |||| || Sbjct 93996 ATCAGACGCTGCTGATCTGGTGGAATACCTTCTTTATCCTGGATCTTTGTCTTGACGTTC 94055 Query 42138 GCCACCGTGTCGCTCGAT---TCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTT 42194 | | |||||| |||| || || || | ||||| ||||| || |||| || || Sbjct 94056 TCGATCGTGTC---CGATCCCTCTACGTCTAGAGTGATAGTTTTCCCAGTTAATGTTTTC 94112 Query 42195 ACAAAGATTTGCATTTT 42211 ||||||||||||||||| Sbjct 94113 ACAAAGATTTGCATTTT 94129 Score = 100 bits (110), Expect = 3e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 41999 CACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATC 42058 |||||| || | ||||| ||||||||||| ||||| ||| || || || | || || Sbjct 93461 CACCAAGTGAAGCGTGCTTTCCTTTTGAATGTTGTAGTCACTGAGTGTGCGACCATCCTC 93520 Query 42059 TAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCAT 42118 || || || || ||||| ||||| || |||||||| | || | | |||||||||| Sbjct 93521 GAGTTGTTTTCCGGCGAAAATGAGACGTTGCTGGTCAGGAGGAATACCCTCCTTGTCCTG 93580 Query 42119 GATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTT 42178 |||||| || | | | | || ||||| | ||| || || | ||||| || || Sbjct 93581 GATTTTGGCCTTCACGTTTTCAATTGTATCGCTGGGTTCAACCTCAAGTGTGATAGTCTT 93640 Query 42179 GCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 ||||| || ||||| || ||||| ||||| Sbjct 93641 CCCCGTGAGGGTCTTGACGAAGATCTGCAT 93670 >seq19021 Length=143982 Score = 98.7 bits (108), Expect = 1e-15 Identities = 74/86 (86%), Gaps = 1/86 (1%) Strand=Plus/Plus Query 56995 ATGAAAAATT-TTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGAC 57053 |||||||||| |||||| || | | ||| |||||| ||||||||||||||||||||| Sbjct 189 ATGAAAAATTCTTCTCCCCGTCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGG 248 Query 57054 ATACTCACCACTATACTACCGAGGAT 57079 ||||| |||||||||||| ||||||| Sbjct 249 ATACTAACCACTATACTAACGAGGAT 274 Score = 98.7 bits (108), Expect = 1e-15 Identities = 74/86 (86%), Gaps = 1/86 (1%) Strand=Plus/Plus Query 56995 ATGAAAAATT-TTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGAC 57053 |||||||||| |||||| || | | ||| |||||| ||||||||||||||||||||| Sbjct 898 ATGAAAAATTCTTCTCCCCGTCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGG 957 Query 57054 ATACTCACCACTATACTACCGAGGAT 57079 ||||| |||||||||||| ||||||| Sbjct 958 ATACTAACCACTATACTAACGAGGAT 983 Score = 98.7 bits (108), Expect = 1e-15 Identities = 74/86 (86%), Gaps = 1/86 (1%) Strand=Plus/Plus Query 56995 ATGAAAAATT-TTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGAC 57053 |||||||||| |||||| || | | ||| |||||| ||||||||||||||||||||| Sbjct 2189 ATGAAAAATTCTTCTCCCCGTCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGG 2248 Query 57054 ATACTCACCACTATACTACCGAGGAT 57079 ||||| |||||||||||| ||||||| Sbjct 2249 ATACTAACCACTATACTAACGAGGAT 2274 Score = 96.9 bits (106), Expect = 4e-15 Identities = 72/83 (87%), Gaps = 1/83 (1%) Strand=Plus/Plus Query 56997 GAAAAATT-TTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACAT 57055 |||||||| |||||| || | | |||||||||| ||||||||||||||||||||| || Sbjct 3590 GAAAAATTCTTCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGAT 3649 Query 57056 ACTCACCACTATACTACCGAGGA 57078 ||| |||||||||||| |||||| Sbjct 3650 ACTAACCACTATACTAACGAGGA 3672 Score = 96.9 bits (106), Expect = 4e-15 Identities = 73/85 (86%), Gaps = 1/85 (1%) Strand=Plus/Plus Query 56995 ATGAAAAATT-TTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGAC 57053 |||||||||| |||||| || | | ||| |||||| ||||||||||||||||||||| Sbjct 4300 ATGAAAAATTCTTCTCCCCGTCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGG 4359 Query 57054 ATACTCACCACTATACTACCGAGGA 57078 ||||| |||||||||||| |||||| Sbjct 4360 ATACTAACCACTATACTAACGAGGA 4384 Score = 93.3 bits (102), Expect = 5e-14 Identities = 73/86 (85%), Gaps = 1/86 (1%) Strand=Plus/Plus Query 56995 ATGAAAAATT-TTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGAC 57053 |||||||||| |||||| | | | ||| |||||| ||||||||||||||||||||| Sbjct 5014 ATGAAAAATTCTTCTCCCCATCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGG 5073 Query 57054 ATACTCACCACTATACTACCGAGGAT 57079 ||||| |||||||||||| ||||||| Sbjct 5074 ATACTAACCACTATACTAACGAGGAT 5099 Score = 91.5 bits (100), Expect = 2e-13 Identities = 71/85 (84%), Gaps = 0/85 (0%) Strand=Plus/Plus Query 56994 TATGAAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGAC 57053 || ||||| |||||| || | | |||||||||| ||||||||||||||||||||| Sbjct 2888 TAGGAAAATGCTTCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGG 2947 Query 57054 ATACTCACCACTATACTACCGAGGA 57078 ||||| |||||||||||| |||||| Sbjct 2948 ATACTAACCACTATACTAACGAGGA 2972 Score = 84.2 bits (92), Expect = 2e-11 Identities = 68/81 (84%), Gaps = 1/81 (1%) Strand=Plus/Plus Query 56997 GAAAAATT-TTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACAT 57055 ||||| || |||||| || | | |||||||||| ||||||||||||||||||||| || Sbjct 1478 GAAAATTTCTTCTCCGCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGAT 1537 Query 57056 ACTCACCACTATACTACCGAG 57076 ||| ||||||||||| |||| Sbjct 1538 ACTAGCCACTATACTAACGAG 1558 >seq18241 Length=1308 Score = 98.7 bits (108), Expect = 1e-15 Identities = 74/86 (86%), Gaps = 1/86 (1%) Strand=Plus/Minus Query 56995 ATGAAAAATT-TTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGAC 57053 |||||||||| |||||| || | | ||| |||||| ||||||||||||||||||||| Sbjct 146 ATGAAAAATTCTTCTCCCCGTCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGG 87 Query 57054 ATACTCACCACTATACTACCGAGGAT 57079 ||||| |||||||||||| ||||||| Sbjct 86 ATACTAACCACTATACTAACGAGGAT 61 Score = 96.9 bits (106), Expect = 4e-15 Identities = 72/83 (87%), Gaps = 1/83 (1%) Strand=Plus/Minus Query 56997 GAAAAATT-TTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACAT 57055 |||||||| |||||| || | | |||||||||| ||||||||||||||||||||| || Sbjct 855 GAAAAATTCTTCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGAT 796 Query 57056 ACTCACCACTATACTACCGAGGA 57078 ||| |||||||||||| |||||| Sbjct 795 ACTAACCACTATACTAACGAGGA 773 >seq13788 Length=1872 Score = 98.7 bits (108), Expect = 1e-15 Identities = 74/86 (86%), Gaps = 1/86 (1%) Strand=Plus/Plus Query 56995 ATGAAAAATT-TTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGAC 57053 |||||||||| |||||| || | | ||| |||||| ||||||||||||||||||||| Sbjct 1719 ATGAAAAATTCTTCTCCCCGTCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGG 1778 Query 57054 ATACTCACCACTATACTACCGAGGAT 57079 ||||| |||||||||||| ||||||| Sbjct 1779 ATACTAACCACTATACTAACGAGGAT 1804 Score = 91.5 bits (100), Expect = 2e-13 Identities = 70/83 (84%), Gaps = 0/83 (0%) Strand=Plus/Plus Query 56997 GAAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATA 57056 ||||| | |||||| || | | ||| |||||| ||||||||||||||||||||| ||| Sbjct 311 GAAAATTCTTCTCCCCGTCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATA 370 Query 57057 CTCACCACTATACTACCGAGGAT 57079 || |||||||||||| ||||||| Sbjct 371 CTAACCACTATACTAACGAGGAT 393 >seq19000 Length=26993 Score = 93.3 bits (102), Expect = 5e-14 Identities = 66/76 (87%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 57003 TTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACC 57062 |||||||| || | | |||||||||| ||||||||||||||||||||| ||||| ||| Sbjct 16152 TTTTCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACC 16211 Query 57063 ACTATACTACCGAGGA 57078 ||||||||| |||||| Sbjct 16212 ACTATACTAACGAGGA 16227 Score = 89.7 bits (98), Expect = 6e-13 Identities = 69/82 (84%), Gaps = 0/82 (0%) Strand=Plus/Plus Query 56997 GAAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATA 57056 |||||| | |||| || | | |||||||||| ||||||||||||||||||||| ||| Sbjct 17691 GAAAAACGTACTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATA 17750 Query 57057 CTCACCACTATACTACCGAGGA 57078 || |||||||||||| |||||| Sbjct 17751 CTGACCACTATACTAACGAGGA 17772 >seq694 Length=46227 Score = 91.5 bits (100), Expect = 2e-13 Identities = 70/83 (84%), Gaps = 0/83 (0%) Strand=Plus/Plus Query 56996 TGAAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACAT 57055 || ||||| ||||| || | | |||||||||| ||||||||||||||||||||| || Sbjct 24847 TGGAAAATACTCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGAT 24906 Query 57056 ACTCACCACTATACTACCGAGGA 57078 ||| |||||||||||| |||||| Sbjct 24907 ACTAACCACTATACTAACGAGGA 24929 >seq19980 Length=299602 Score = 89.7 bits (98), Expect = 6e-13 Identities = 135/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 ||||||||| |||||||| || | ||||| || | || ||||| || ||||| || || Sbjct 144699 CTCCTTTTGGATATTGTAGTCTGAAAGAGTACGTCCATCTTCTAGTTGTTTACCGGCAAA 144640 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136 || || | |||||| || | || | | ||| ||||| |||||| || | | Sbjct 144639 GATTAGCCTCTGCTGATCAGGGGGGATACCCTCTTTGTCTTGGATTTTCGCCTTAACATT 144580 Query 42137 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 42196 | | | ||||| | ||| || || | ||||||||||| || || || |||||||| Sbjct 144579 CTCAATTGTGTCAGAAGGTTCAACCTCCAGGGTGATGGTTTTCCCGGTGAGAGTCTTTAC 144520 Query 42197 AAAGATTTGCAT 42208 |||||| ||||| Sbjct 144519 AAAGATCTGCAT 144508 >seq17726 Length=138386 Score = 89.7 bits (98), Expect = 6e-13 Identities = 55/59 (93%), Gaps = 0/59 (0%) Strand=Plus/Minus Query 57020 AATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTATACTACCGAGGA 57078 |||||||||| ||||||||||||||||||||| |||||||||||||||||| |||||| Sbjct 106110 AATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTATACTAACGAGGA 106052 Score = 86.0 bits (94), Expect = 7e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | |||||||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 113859 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCACTA 113918 Query 57067 TACTACCGAGGA 57078 ||||| |||||| Sbjct 113919 TACTAACGAGGA 113930 >seq4398 Length=71471 Score = 89.7 bits (98), Expect = 6e-13 Identities = 64/74 (86%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 57005 TTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCAC 57064 |||||| || | | |||||||||| ||||||||||||||||||||| ||||| ||||| Sbjct 53030 TTCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCAC 53089 Query 57065 TATACTACCGAGGA 57078 ||||||| |||||| Sbjct 53090 TATACTAACGAGGA 53103 >seq19065 Length=18389 Score = 87.8 bits (96), Expect = 2e-12 Identities = 68/81 (84%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 56998 AAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 57057 ||||| | |||| || | | |||||||||| ||||||||||||||||||||| |||| Sbjct 12310 AAAAACTACCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 12251 Query 57058 TCACCACTATACTACCGAGGA 57078 | |||||||||||| |||||| Sbjct 12250 TGACCACTATACTAACGAGGA 12230 >seq19806 Length=356711 Score = 86.0 bits (94), Expect = 7e-12 Identities = 67/80 (84%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 56999 AAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACT 57058 |||| | |||| || | | |||||||||| ||||||||||||||||||||| ||||| Sbjct 230002 AAAAATAACTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACT 230061 Query 57059 CACCACTATACTACCGAGGA 57078 |||||||||||| |||||| Sbjct 230062 GACCACTATACTAACGAGGA 230081 >seq2750 Length=537 Score = 86.0 bits (94), Expect = 7e-12 Identities = 74/88 (84%), Gaps = 3/88 (3%) Strand=Plus/Plus Query 56995 ATGAAAAATT-TTCTCCTCGGCAAGA-AATCGAACCCT-GGTCTCCCGCGTGACAGGCGG 57051 |||||||||| |||||| || | | ||| |||||| ||||||||||||||||||||| Sbjct 338 ATGAAAAATTCTTCTCCCCGTCGGGGGAATTGAACCCCCGGTCTCCCGCGTGACAGGCGG 397 Query 57052 ACATACTCACCACTATACTACCGAGGAT 57079 ||||| |||||||||||| ||||||| Sbjct 398 GGATACTAACCACTATACTAACGAGGAT 425 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 543073954808320