Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Varroa_20destructor_20[genbank_20GCA_5F000181155.2_202017-05-09] 20,448 sequences; 331,927,360 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq19980 141 9e-29 seq7231 127 2e-24 >seq19980 Length=299602 Score = 141 bits (156), Expect = 9e-29 Identities = 168/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 |||||| || | || ||| || || || | || || || |||||||| ||||| || | Sbjct 144963 ACCGCCACGAAGTCGAAGGACAAGGTGGAGGGTGGACTCCTTTTGAATATTGTAGTCCGA 144904 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | |||||| | |||||||||||||| |||||| | || | | ||| || ||||| || Sbjct 144903 AAGGGTGCGTCCATCTTCAAGCTGCTTTCCGGCAAAGATCAATCTCTGTTGATCGGGGGG 144844 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395 ||||||||| || ||||| || || |||||| ||| | ||||||| | ||||| Sbjct 144843 AATTCCTTCCTTGTCTTGAATCTTGGCCTTTACGTTCTCAATTGTATCAGAAGGCTCCAC 144784 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 ||| | || | |||||| || || | ||||| |||||||||||||| Sbjct 144783 TTCCAAGGTGATGGTCTTCCCAGTAAGGGTTTTGACGAAAATTTGCAT 144736 Score = 129 bits (142), Expect = 6e-25 Identities = 155/211 (73%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 64235 ACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCA 64294 || ||||||| ||||||||||| || ||||||||||| | | || || ||||||| Sbjct 144488 ACAAGATGAAGGGTCGATTCTTTCTGGATGTTGTAATCAGAAAGAGTACGTCCGTCTTCC 144429 Query 64295 AGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGT 64354 | ||| || || ||| | || | || ||||||||| || ||||| || || || ||||| Sbjct 144428 AACTGTTTACCAGCAAAGATTAACCTCTGCTGGTCTGGGGGAATCCCCTCCTTATCTTGA 144369 Query 64355 ATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTG 64414 || || ||| ||| || | ||||||| | ||||| || | || | ||||| Sbjct 144368 ATCTTCGCCTTGACATTTTCGATTGTATCAGAAGACTCCACCTCAAGGGTGATAGTCTTT 144309 Query 64415 CCGGTCAAAGTTTTTACGAAAATTTGCATTT 64445 ||||| |||||||| || ||||||||||||| Sbjct 144308 CCGGTTAAAGTTTTCACAAAAATTTGCATTT 144278 Score = 127 bits (140), Expect = 2e-24 Identities = 167/229 (73%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| || || | ||| ||||| ||||||| || || ||||||||||||||||| || | Sbjct 145191 ACCTCCTCGGAGTCTCAGCACCAGATGAAGGGTAGACTCTTTTTGAATGTTGTAGTCGGA 145132 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 || ||||| | || || ||||| ||||| || |||| | || || || ||||| || Sbjct 145131 GAGCGTGCGACCATCCTCGAGCTGTTTGCCTGCGAAAATCAACCTTTGTTGATCGGGGGG 145072 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTT-ACAACCTCCACTGTATCACCGGCGTCCA 64394 ||||||||| || ||||| | |||| ||||| || ||| | ||||| | | || | Sbjct 145071 AATTCCTTCCTTGTCTTG-AATTTTGGCTTTAACGTTCTCAATCGTATCGCTTGGCTCGA 145013 Query 64395 CTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 |||| | ||| | || || ||||| | ||||| || ||||| ||||| Sbjct 145012 CTTCAAGAGTGATCGTTTTTCCGGTAAGCGTTTTAACAAAAATCTGCAT 144964 >seq7231 Length=219762 Score = 127 bits (140), Expect = 2e-24 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276 || |||||||| | || || || |||| |||||||| || || || |||||||| | | Sbjct 93900 CCTCCGCGCAAACGGAGGACGAGGTGAAGAGTCGATTCCTTCTGTATATTGTAATCGGAG 93959 Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336 | ||||| |||| || ||||||||||| || |||| || |||||||| || || ||| Sbjct 93960 AGTGTGCGACCGTCCTCTAGCTGCTTGCCAGCGAAAATCAGACGCTGCTGATCTGGTGGA 94019 Query 64337 ATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACT 64396 || |||||||| || || || ||| ||| || ||| | || || | || || Sbjct 94020 ATACCTTCTTTATCCTGGATCTTTGTCTTGACGTTCTCGATCGTGTCCGATCCCTCTACG 94079 Query 64397 TCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATTTT 64446 |||| ||| | || || || || || ||||| || || ||||||||||| Sbjct 94080 TCTAGAGTGATAGTTTTCCCAGTTAATGTTTTCACAAAGATTTGCATTTT 94129 Score = 125 bits (138), Expect = 7e-24 Identities = 146/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || || ||||| |||||||| || |||| | || || ||||||||||||||||||| Sbjct 100238 GTAGACTCTTTCTGAATGTTATAGTCTGATAGCGTTCGGCCGTCTTCAAGCTGCTTGCCA 100297 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 ||| | || | || ||||| ||||| ||||| ||||| || ||||| || ||| ||| Sbjct 100298 GCAAAGATTAACCTTTGCTGATCGGGCGGAATACCTTCCTTGTCTTGAATCTTTGCCTTA 100357 Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426 || || | |||||| | | || || |||| ||| | ||||| ||||||| ||| Sbjct 100358 ACGTTTTCGATTGTATCGCTAGGTTCAACCTCTAGAGTGATCGTCTTTCCGGTCAGCGTT 100417 Query 64427 TTTACGAAAATTTGCAT 64443 |||||||| || ||||| Sbjct 100418 TTTACGAAGATCTGCAT 100434 Score = 118 bits (130), Expect = 1e-21 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276 || ||||| | ||| ||||| ||||||| || || ||||| |||||||| || || | Sbjct 99980 CCTCCGCGGAGTCTGAGCACCAGATGAAGAGTAGACTCTTTCTGAATGTTATAGTCAGAT 100039 Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336 | || || | ||||| ||||| || || ||| |||| |||| ||| || || ||||| Sbjct 100040 AGAGTACGACCATCTTCGAGCTGTTTACCAGCAAAAATTAGCCTCTGTTGATCAGGAGGG 100099 Query 64337 ATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACT 64396 ||||||||||| || || ||||| ||| || || | ||||||| || || || Sbjct 100100 ATTCCTTCTTTGTCCTGAATTTTGGCCTTGACGTTTTCAATGGTATCACTGGATTCTACC 100159 Query 64397 TCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATT 64444 || | || | || ||||| || | || || |||||||| |||||| Sbjct 100160 TCGAGTGTGATAGTTTTGCCTGTGAGCGTCTTCACGAAAATCTGCATT 100207 Score = 109 bits (120), Expect = 5e-19 Identities = 152/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 64231 AAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTC 64290 ||| || || || | ||| |||||||| || |||||||| |||| | || | |||| Sbjct 92586 AAGAACGAGGTGGAGCGTTGATTCTTTCTGGATGTTGTAGTCTGACAGTGTTCTACCGTC 92645 Query 64291 TTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTC 64350 || ||||| || || ||| | || | ||||||||||| || || || ||||| || || Sbjct 92646 CTCGAGCTGTTTACCCGCAAAGATCAATCGCTGCTGGTCAGGCGGGATACCTTCCTTGTC 92705 Query 64351 TTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGT 64410 || ||||| ||| || ||| | ||||| || || || || | || | ||| Sbjct 92706 CTGAATTTTCGCCTTCACGTTCTCGATGGTATCTGAGGGTTCGACCTCCAAGGTAATGGT 92765 Query 64411 CTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 ||| || |||||||| |||||||| |||||||| Sbjct 92766 CTTCCCCGTCAAAGTCTTTACGAAGATTTGCAT 92798 Score = 105 bits (116), Expect = 7e-18 Identities = 142/198 (72%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || |||||||| ||||| |||||||| | | ||| || | || || || || || || Sbjct 92187 GTTGATTCTTTCTGAATATTGTAATCGGACAGGGTACGTCCATCCTCGAGTTGTTTTCCA 92246 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 || | || || |||||||| || || || || ||||| || || || |||||| |||| Sbjct 92247 GCGAATATAAGACGCTGCTGATCAGGGGGGATGCCTTCCTTATCCTGAATTTTTGCCTTT 92306 Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426 || || | ||||| || || || || | |||| ||| || |||||||| || Sbjct 92307 ACGTTTTCGATGGTATCCGAGGGCTCAACCTCAAGGGTTATGGTTTTTCCGGTCAACGTC 92366 Query 64427 TTTACGAAAATTTGCATT 64444 || ||||||||||||||| Sbjct 92367 TTAACGAAAATTTGCATT 92384 Score = 98.7 bits (108), Expect = 1e-15 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276 ||||| || | | |||||| | |||| ||| ||| |||||||||||||| || | Sbjct 93444 CCGCCACGGAGCCGAAGCACCAAGTGAAGCGTGCTTTCCTTTTGAATGTTGTAGTCACTG 93503 Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336 | ||||| | || || || || || ||||| ||||||| || |||||||| |||||| Sbjct 93504 AGTGTGCGACCATCCTCGAGTTGTTTTCCGGCGAAAATGAGACGTTGCTGGTCAGGAGGA 93563 Query 64337 ATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACT 64396 || || || || || || ||||| ||| || || | |||||| | || || || Sbjct 93564 ATACCCTCCTTGTCCTGGATTTTGGCCTTCACGTTTTCAATTGTATCGCTGGGTTCAACC 93623 Query 64397 TCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || | || | ||||| || || | || || ||||| || ||||| Sbjct 93624 TCAAGTGTGATAGTCTTCCCCGTGAGGGTCTTGACGAAGATCTGCAT 93670 Score = 95.1 bits (104), Expect = 1e-14 Identities = 158/226 (70%), Gaps = 2/226 (1%) Strand=Plus/Plus Query 64220 CCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACG 64279 || |||| | |||||| ||||| | || ||| || |||||||| ||||| | | Sbjct 93219 CCTCGCAGGCGAAGCACAAGATGGAGAGTGCTTTCCTTCTGAATGTTATAATCGTTAAGG 93278 Query 64280 GTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATT 64339 ||||| | || || | ||| || || ||| |||| | || |||||||| |||||||| Sbjct 93279 GTGCGGCCATCCTCCAACTGTTTTCCAGCAAAAATCAAACGTTGCTGGTCAGGAGGAATG 93338 Query 64340 CCTTCTTTTTCTTGTATTTTTTGCTTT-ACAACCTCCACTGTATCACCGGCGTCCACTTC 64398 || ||||| || || || ||| ||||| ||| || | ||| || | || ||||| Sbjct 93339 CCCTCTTTGTCCTGGATCTTT-GCTTTGACATTTTCAATTGTGTCGGATGGCTCGACTTC 93397 Query 64399 TACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATT 64444 | || | ||||||||||| | ||| || || || || |||||| Sbjct 93398 AAGCGTGATCGTCTTGCCGGTGAGAGTCTTGACAAAGATCTGCATT 93443 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499517090789120