Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Varroa_20destructor_20[genbank_20GCA_5F000181155.2_202017-05-09]
20,448 sequences; 331,927,360 total letters
Query= NC_010276.1
Length=156179
Score E
Sequences producing significant alignments: (Bits) Value
seq19980 141 9e-29
seq7231 127 2e-24
>seq19980
Length=299602
Score = 141 bits (156), Expect = 9e-29
Identities = 168/228 (74%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275
|||||| || | || ||| || || || | || || || |||||||| ||||| || |
Sbjct 144963 ACCGCCACGAAGTCGAAGGACAAGGTGGAGGGTGGACTCCTTTTGAATATTGTAGTCCGA 144904
Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335
| |||||| | |||||||||||||| |||||| | || | | ||| || ||||| ||
Sbjct 144903 AAGGGTGCGTCCATCTTCAAGCTGCTTTCCGGCAAAGATCAATCTCTGTTGATCGGGGGG 144844
Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395
||||||||| || ||||| || || |||||| ||| | ||||||| | |||||
Sbjct 144843 AATTCCTTCCTTGTCTTGAATCTTGGCCTTTACGTTCTCAATTGTATCAGAAGGCTCCAC 144784
Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443
||| | || | |||||| || || | ||||| ||||||||||||||
Sbjct 144783 TTCCAAGGTGATGGTCTTCCCAGTAAGGGTTTTGACGAAAATTTGCAT 144736
Score = 129 bits (142), Expect = 6e-25
Identities = 155/211 (73%), Gaps = 0/211 (0%)
Strand=Plus/Minus
Query 64235 ACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCA 64294
|| ||||||| ||||||||||| || ||||||||||| | | || || |||||||
Sbjct 144488 ACAAGATGAAGGGTCGATTCTTTCTGGATGTTGTAATCAGAAAGAGTACGTCCGTCTTCC 144429
Query 64295 AGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGT 64354
| ||| || || ||| | || | || ||||||||| || ||||| || || || |||||
Sbjct 144428 AACTGTTTACCAGCAAAGATTAACCTCTGCTGGTCTGGGGGAATCCCCTCCTTATCTTGA 144369
Query 64355 ATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTG 64414
|| || ||| ||| || | ||||||| | ||||| || | || | |||||
Sbjct 144368 ATCTTCGCCTTGACATTTTCGATTGTATCAGAAGACTCCACCTCAAGGGTGATAGTCTTT 144309
Query 64415 CCGGTCAAAGTTTTTACGAAAATTTGCATTT 64445
||||| |||||||| || |||||||||||||
Sbjct 144308 CCGGTTAAAGTTTTCACAAAAATTTGCATTT 144278
Score = 127 bits (140), Expect = 2e-24
Identities = 167/229 (73%), Gaps = 2/229 (1%)
Strand=Plus/Minus
Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275
||| || || | ||| ||||| ||||||| || || ||||||||||||||||| || |
Sbjct 145191 ACCTCCTCGGAGTCTCAGCACCAGATGAAGGGTAGACTCTTTTTGAATGTTGTAGTCGGA 145132
Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335
|| ||||| | || || ||||| ||||| || |||| | || || || ||||| ||
Sbjct 145131 GAGCGTGCGACCATCCTCGAGCTGTTTGCCTGCGAAAATCAACCTTTGTTGATCGGGGGG 145072
Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTT-ACAACCTCCACTGTATCACCGGCGTCCA 64394
||||||||| || ||||| | |||| ||||| || ||| | ||||| | | || |
Sbjct 145071 AATTCCTTCCTTGTCTTG-AATTTTGGCTTTAACGTTCTCAATCGTATCGCTTGGCTCGA 145013
Query 64395 CTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443
|||| | ||| | || || ||||| | ||||| || ||||| |||||
Sbjct 145012 CTTCAAGAGTGATCGTTTTTCCGGTAAGCGTTTTAACAAAAATCTGCAT 144964
>seq7231
Length=219762
Score = 127 bits (140), Expect = 2e-24
Identities = 166/230 (72%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276
|| |||||||| | || || || |||| |||||||| || || || |||||||| | |
Sbjct 93900 CCTCCGCGCAAACGGAGGACGAGGTGAAGAGTCGATTCCTTCTGTATATTGTAATCGGAG 93959
Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336
| ||||| |||| || ||||||||||| || |||| || |||||||| || || |||
Sbjct 93960 AGTGTGCGACCGTCCTCTAGCTGCTTGCCAGCGAAAATCAGACGCTGCTGATCTGGTGGA 94019
Query 64337 ATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACT 64396
|| |||||||| || || || ||| ||| || ||| | || || | || ||
Sbjct 94020 ATACCTTCTTTATCCTGGATCTTTGTCTTGACGTTCTCGATCGTGTCCGATCCCTCTACG 94079
Query 64397 TCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATTTT 64446
|||| ||| | || || || || || ||||| || || |||||||||||
Sbjct 94080 TCTAGAGTGATAGTTTTCCCAGTTAATGTTTTCACAAAGATTTGCATTTT 94129
Score = 125 bits (138), Expect = 7e-24
Identities = 146/197 (74%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306
|| || ||||| |||||||| || |||| | || || |||||||||||||||||||
Sbjct 100238 GTAGACTCTTTCTGAATGTTATAGTCTGATAGCGTTCGGCCGTCTTCAAGCTGCTTGCCA 100297
Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366
||| | || | || ||||| ||||| ||||| ||||| || ||||| || ||| |||
Sbjct 100298 GCAAAGATTAACCTTTGCTGATCGGGCGGAATACCTTCCTTGTCTTGAATCTTTGCCTTA 100357
Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426
|| || | |||||| | | || || |||| ||| | ||||| ||||||| |||
Sbjct 100358 ACGTTTTCGATTGTATCGCTAGGTTCAACCTCTAGAGTGATCGTCTTTCCGGTCAGCGTT 100417
Query 64427 TTTACGAAAATTTGCAT 64443
|||||||| || |||||
Sbjct 100418 TTTACGAAGATCTGCAT 100434
Score = 118 bits (130), Expect = 1e-21
Identities = 163/228 (71%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276
|| ||||| | ||| ||||| ||||||| || || ||||| |||||||| || || |
Sbjct 99980 CCTCCGCGGAGTCTGAGCACCAGATGAAGAGTAGACTCTTTCTGAATGTTATAGTCAGAT 100039
Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336
| || || | ||||| ||||| || || ||| |||| |||| ||| || || |||||
Sbjct 100040 AGAGTACGACCATCTTCGAGCTGTTTACCAGCAAAAATTAGCCTCTGTTGATCAGGAGGG 100099
Query 64337 ATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACT 64396
||||||||||| || || ||||| ||| || || | ||||||| || || ||
Sbjct 100100 ATTCCTTCTTTGTCCTGAATTTTGGCCTTGACGTTTTCAATGGTATCACTGGATTCTACC 100159
Query 64397 TCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATT 64444
|| | || | || ||||| || | || || |||||||| ||||||
Sbjct 100160 TCGAGTGTGATAGTTTTGCCTGTGAGCGTCTTCACGAAAATCTGCATT 100207
Score = 109 bits (120), Expect = 5e-19
Identities = 152/213 (71%), Gaps = 0/213 (0%)
Strand=Plus/Plus
Query 64231 AAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTC 64290
||| || || || | ||| |||||||| || |||||||| |||| | || | ||||
Sbjct 92586 AAGAACGAGGTGGAGCGTTGATTCTTTCTGGATGTTGTAGTCTGACAGTGTTCTACCGTC 92645
Query 64291 TTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTC 64350
|| ||||| || || ||| | || | ||||||||||| || || || ||||| || ||
Sbjct 92646 CTCGAGCTGTTTACCCGCAAAGATCAATCGCTGCTGGTCAGGCGGGATACCTTCCTTGTC 92705
Query 64351 TTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGT 64410
|| ||||| ||| || ||| | ||||| || || || || | || | |||
Sbjct 92706 CTGAATTTTCGCCTTCACGTTCTCGATGGTATCTGAGGGTTCGACCTCCAAGGTAATGGT 92765
Query 64411 CTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443
||| || |||||||| |||||||| ||||||||
Sbjct 92766 CTTCCCCGTCAAAGTCTTTACGAAGATTTGCAT 92798
Score = 105 bits (116), Expect = 7e-18
Identities = 142/198 (72%), Gaps = 0/198 (0%)
Strand=Plus/Plus
Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306
|| |||||||| ||||| |||||||| | | ||| || | || || || || || ||
Sbjct 92187 GTTGATTCTTTCTGAATATTGTAATCGGACAGGGTACGTCCATCCTCGAGTTGTTTTCCA 92246
Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366
|| | || || |||||||| || || || || ||||| || || || |||||| ||||
Sbjct 92247 GCGAATATAAGACGCTGCTGATCAGGGGGGATGCCTTCCTTATCCTGAATTTTTGCCTTT 92306
Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426
|| || | ||||| || || || || | |||| ||| || |||||||| ||
Sbjct 92307 ACGTTTTCGATGGTATCCGAGGGCTCAACCTCAAGGGTTATGGTTTTTCCGGTCAACGTC 92366
Query 64427 TTTACGAAAATTTGCATT 64444
|| |||||||||||||||
Sbjct 92367 TTAACGAAAATTTGCATT 92384
Score = 98.7 bits (108), Expect = 1e-15
Identities = 158/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276
||||| || | | |||||| | |||| ||| ||| |||||||||||||| || |
Sbjct 93444 CCGCCACGGAGCCGAAGCACCAAGTGAAGCGTGCTTTCCTTTTGAATGTTGTAGTCACTG 93503
Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336
| ||||| | || || || || || ||||| ||||||| || |||||||| ||||||
Sbjct 93504 AGTGTGCGACCATCCTCGAGTTGTTTTCCGGCGAAAATGAGACGTTGCTGGTCAGGAGGA 93563
Query 64337 ATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACT 64396
|| || || || || || ||||| ||| || || | |||||| | || || ||
Sbjct 93564 ATACCCTCCTTGTCCTGGATTTTGGCCTTCACGTTTTCAATTGTATCGCTGGGTTCAACC 93623
Query 64397 TCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443
|| | || | ||||| || || | || || ||||| || |||||
Sbjct 93624 TCAAGTGTGATAGTCTTCCCCGTGAGGGTCTTGACGAAGATCTGCAT 93670
Score = 95.1 bits (104), Expect = 1e-14
Identities = 158/226 (70%), Gaps = 2/226 (1%)
Strand=Plus/Plus
Query 64220 CCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACG 64279
|| |||| | |||||| ||||| | || ||| || |||||||| ||||| | |
Sbjct 93219 CCTCGCAGGCGAAGCACAAGATGGAGAGTGCTTTCCTTCTGAATGTTATAATCGTTAAGG 93278
Query 64280 GTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATT 64339
||||| | || || | ||| || || ||| |||| | || |||||||| ||||||||
Sbjct 93279 GTGCGGCCATCCTCCAACTGTTTTCCAGCAAAAATCAAACGTTGCTGGTCAGGAGGAATG 93338
Query 64340 CCTTCTTTTTCTTGTATTTTTTGCTTT-ACAACCTCCACTGTATCACCGGCGTCCACTTC 64398
|| ||||| || || || ||| ||||| ||| || | ||| || | || |||||
Sbjct 93339 CCCTCTTTGTCCTGGATCTTT-GCTTTGACATTTTCAATTGTGTCGGATGGCTCGACTTC 93397
Query 64399 TACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATT 64444
| || | ||||||||||| | ||| || || || || ||||||
Sbjct 93398 AAGCGTGATCGTCTTGCCGGTGAGAGTCTTGACAAAGATCTGCATT 93443
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 499517090789120
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |