Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Varroa_20destructor_20[genbank_20GCA_5F000181155.2_202017-05-09] 20,448 sequences; 331,927,360 total letters Query= NC_011056.1 Length=75811 Score E Sequences producing significant alignments: (Bits) Value seq4655 374 4e-99 seq19061 181 5e-41 >seq4655 Length=4343 Score = 374 bits (414), Expect = 4e-99 Identities = 574/820 (70%), Gaps = 34/820 (4%) Strand=Plus/Minus Query 65913 ATTCCCACCGGCTCGATAGCTCTGGACGCCGCTCTCGGCATCGGGGGGTATCCGAGGGGC 65972 || |||||||| || || || ||||||||||| || |||||||| ||| || | |||| Sbjct 3767 ATCCCCACCGGGTCCATCGCGCTGGACGCCGCGCTGGGCATCGGCGGGCTGCCCAAGGGC 3708 Query 65973 CGGGTAGTGGAGATCTACGGTCCTGAGTCTTCAGGGAAGTCAAC-GTTGTGCCTCCACGC 66031 ||||| || ||||||||||| || ||||| || || ||| | || || | || | ||||| Sbjct 3707 CGGGTCGTCGAGATCTACGGCCCGGAGTCCTCGGGCAAGACGACTGTCGCGC-TGCACGC 3649 Query 66032 GGTGGCCAATGCCCAGAAGGCCGGTGGCAACGCCGCCTACATCGACGCCGAACATTCTCT 66091 || ||||| |||||| || || ||| ||||| | ||||||||| || || | || Sbjct 3648 CGTCGCCAACGCCCAGGCCGCGGGCGGCGTGGCCGCGTTCATCGACGCGGAGCACGCGCT 3589 Query 66092 CGACCCTGAGTACGCCGCGGCGCTCGGGGTGGATGTCGACAATCTCGTGGTTGTGCAGCC 66151 ||||| |||||||| | ||||||||||| ||| || ||| | || ||||| Sbjct 3588 GGACCCGGAGTACGCGAAGAACCTCGGGGTGGACACCGAGAACCTCCTCGTCTCCCAGCC 3529 Query 66152 AGACACTGGCGAGCAGGCCCTGGAGATCGTTGACCTTCTCGTCAAGTCTGGCGAGGTTTC 66211 ||||| ||||||||||| ||||||||| ||| | || || || |||| | | Sbjct 3528 GGACACCGGCGAGCAGGCTTTGGAGATCGCGGACATGCTGATCCGCTCGGGCGCGCTCGA 3469 Query 66212 CATCATCGTTGTGGACTCTGTGGCGGCCCTGGT-------------------------GC 66246 | ||||||| | ||||| ||||||||||| || || Sbjct 3468 CGTCATCGTCATCGACTCGGTGGCGGCCCTCGTNNNNNNNNNNNNNNNNNNNNCTCGTGC 3409 Query 66247 CGCGGGCGGAGCTCGAAGGGGACATCGGGGACTCGCACGTCGGCCTGCATGCCCGCCTGA 66306 || ||| ||| ||||||| || || |||||| |||||||||||||| ||||| || | Sbjct 3408 CGAAGGCCGAGATCGAAGGCGAGATGGGGGACAGCCACGTCGGCCTGCAGGCCCGGCTCA 3349 Query 66307 TGTCTCAGGCCATGCGCAAGCTGACCGGCACGATTGCCAGCACCAACACGCTCACCCTGT 66366 || ||||| |||| ||| ||||||| | | || | || |||| | | | Sbjct 3348 TGAGCCAGGCGCTGCGGAAGATGACCGGAGCCTTGAACAACTCCGGCACGACGGCGATCT 3289 Query 66367 GGGTGAATCAGCTGCGCGAGAAGATCGGCAACGTGGGCTACGGCCCGAATGAGACCACCA 66426 | || ||||||||||||||||||||| ||| | |||||||| |||||||||| Sbjct 3288 TCATCAACCAGCTGCGCGAGAAGATCGGC---GTGATGTTCGGCCCGACCGAGACCACCA 3232 Query 66427 CCGGTGGTAAGGCTCTGCGCTTCTACGCCTCGGTGCGTATGGATGTCCGCAGGATCGCCA 66486 | || || ||||| ||| |||||||||||||||||| |||| || ||| |||||| | Sbjct 3231 CAGGCGGCAAGGCCCTGAAATTCTACGCCTCGGTGCGTTTGGACGTGCGCCGGATCGAGA 3172 Query 66487 CCGAGAAGGAAGGCGATGAGGCTGTCGGCAACCGCACGCGCGTGAAGGTTGTCAAGAACA 66546 || ||||| ||| || || || | |||||||| ||||||||| | |||||||||| Sbjct 3171 CCCTCAAGGACGGCTCCGAAGCGGTGGCGAACCGCACCCGCGTGAAGATCGTCAAGAACA 3112 Query 66547 AGCTGGCGCCTCCGCACCGCCAGGCTGAGTTTTCCATCGTCTACGGCGAGGGCATTTCCC 66606 || | || || ||| | ||||| ||||| |||| |||||||| ||||| || Sbjct 3111 AGGTCGCCCCGCCGTTCAAACAGGCGGAGTTCGACATCATCTACGGCTCCGGCATCAGCC 3052 Query 66607 GCGAGGCTGAACTCCTCGACATGGCCGTTTCCCGAGGGCTCATCAAGAAGTCTGGGGCCT 66666 |||||| ||| ||||| | | ||| | || || | ||||| ||||||| Sbjct 3051 GCGAGGGCTCGCTCATCGACCTCGGCGTGGAGCACGGCATCGTGCGCAAGTCCGGGGCCT 2992 Query 66667 GGTTCAAGTACGGGGACAAGAACA--TCGGCCAGGGCAAG 66704 ||| || ||||| | | ||||| |||||||||||||| Sbjct 2991 GGTACACCTACGGCG--ATGAACAGCTCGGCCAGGGCAAG 2954 >seq19061 Length=15585 Score = 181 bits (200), Expect = 5e-41 Identities = 228/308 (74%), Gaps = 9/308 (3%) Strand=Plus/Minus Query 59303 GTCGGCACCCTGACCGCCGACCCCGAGCTGCGGTTCAC-CCAAGGTGGGCAGGCCGTCGC 59361 ||||||| | |||| ||||| ||||||||||||||||| || | | || ||||||||| Sbjct 14188 GTCGGCAACTTGACGGCCGATCCCGAGCTGCGGTTCACACCGACCGGCGC-GGCCGTCGC 14130 Query 59362 CAACTTCACCGTCGTGTCCAACGAACGCCGCCGCGACGCCCAGGGCAAC---TGGGTCGA 59418 ||||||||||||| ||| | || | |||| ||| |||| ||| || Sbjct 14129 GAACTTCACCGTCGCGTCGACGCCTCGGACCTTCGACCGTCAGACCAACGAGTGGAAGGA 14070 Query 59419 CGGCGACGCCACATTCCTCCGCTGCACCATCTGGCGCGACGCCGCCGAGAACGTAGCGGA 59478 |||||| || ||| | ||||||| |||||||||||| ||||| |||||||| || || Sbjct 14069 CGGCGAAGCGCTGTTCTTGCGCTGCAACATCTGGCGCGAGGCCGCGGAGAACGTGGCCGA 14010 Query 59479 AAGCCT--CCAGAAAGGCCAGCGCGTCATCGTGCATGGCTACCTCAAGCAGCGCTCCTTC 59536 || |||| ||| ||||||||||||| ||| |||||||||||||| | | Sbjct 14009 GTCGCTGACCAGG--GGCGCGCGCGTCATCGTGACCGGCAGGCTCAAGCAGCGCTCGTAC 13952 Query 59537 GAGACCAAGGAAGGCGACAAGCGCACCGTCATCGAGGTGGAGGTAGACGAGATCGGCCCG 59596 |||||| || ||||| ||||| |||||| ||||| | || || ||||||||||| || Sbjct 13951 GAGACCCGCGAGGGCGAGAAGCGGACCGTCGTCGAGCTCGAAGTCGACGAGATCGGGCCT 13892 Query 59597 TCGCTGCG 59604 || ||||| Sbjct 13891 TCCCTGCG 13884 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 242409973951616