Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Varroa_20destructor_20[genbank_20GCA_5F000181155.2_202017-05-09] 20,448 sequences; 331,927,360 total letters Query= NC_011103.1 Length=60195 Score E Sequences producing significant alignments: (Bits) Value seq11438 91.5 6e-14 >seq11438 Length=376 Score = 91.5 bits (100), Expect = 6e-14 Identities = 176/255 (69%), Gaps = 6/255 (2%) Strand=Plus/Minus Query 1138 GACGACGCCGAGACGTCGAAGGATCCGCGCATTGTAAGCCACATCTACACGGCGCCTGCA 1197 |||||||| | | ||||||||| ||||||| || |||| | |||||| ||||| Sbjct 376 GACGACGCGGCGCAGTCGAAGGACGCGCGCATCGTGAGCCGCGTCTACAGCGCGCCCAAG 317 Query 1198 GATTGCGAACTAGACGAC-CGCGAGGCGTGGGCTGCAGCCAATCCGGCGCTCGGCGTGTT 1256 | || || |||||| ||| ||| ||| || || ||||||||| | ||| |||| Sbjct 316 GCGGCCGGGCTGGACGACGCGCAAGGA-TGGAGGGCTGCGAATCCGGCGATGGGCCTGTT 258 Query 1257 CCGCTCCGTGAAGGACGTGGAAGACTTCTCGCTGCT--GGCGAGCCGCATGCCGACCAAG 1314 ||||||| | | |||||| || | || || ||| | ||||||||||| | | Sbjct 257 TCGCTCCGAGGATGACGTGAGGGAG--CAAGCAGCCCAGGCCATCCGCATGCCGAGCGCG 200 Query 1315 GAGGCCAGCTTCCGTTGGCTGTTCCTGAATCAGCGCATTGACGCGTCGGCGCCGTTTGTT 1374 ||||| | || || ||| ||||||||||||| | || || | |||| || || Sbjct 199 GAGGCAACGTTTCGCAACCTGATCCTGAATCAGCGGGTCGAGGCCAGGTCGCCCTTCGTG 140 Query 1375 TCGCCTGCCGTGTGG 1389 ||||| | |||||| Sbjct 139 TCGCCGTCGGTGTGG 125 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 192455656567232