Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Varroa_20destructor_20[genbank_20GCA_5F000181155.2_202017-05-09] 20,448 sequences; 331,927,360 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq7231 122 9e-23 seq19980 102 8e-17 seq19563 87.8 2e-12 >seq7231 Length=219762 Score = 122 bits (134), Expect = 9e-23 Identities = 146/194 (75%), Gaps = 6/194 (3%) Strand=Plus/Plus Query 138424 TCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGA--GTCCTCGAGTTGTTTACCGGAAT 138481 ||||| || |||||||||| | |||| |||| ||||||||||||||| || | | Sbjct 92836 TCCTTCTGGATGTTGTAGT--CCGATAGCGTGCGACCGTCCTCGAGTTGTTTTCCAGCAA 92893 Query 138482 AGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTG-TTTTAAT 138540 |||| |||||||||||||| || || || || |||||||| ||| |||| | ||||| Sbjct 92894 AGATGAGACGCTGTTGGTCAGGCGGAATGCCCTCTTTGTC-TTGAATTTTCGCTTTTACG 92952 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | || | ||||||| | | ||| || || | || | ||||| || || || ||||| Sbjct 92953 TTCTCAATGGTGTCGCTTGGCTCAACTTCAAGTGTTATTGTTTTTCCCGTAAGGGTTTTC 93012 Query 138601 ACAAAAATCTGCAT 138614 |||||||||||||| Sbjct 93013 ACAAAAATCTGCAT 93026 Score = 102 bits (112), Expect = 8e-17 Identities = 141/195 (72%), Gaps = 2/195 (1%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 ||||| || |||||||| ||||| | |||||| || ||||| |||||||| | | Sbjct 100013 GACTCTTTCTGAATGTTATAGTCAGATAGAGTACGACCATCTTCGAGCTGTTTACCAGCA 100072 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTG-TTTTAA 138539 | ||||| | |||||| || ||||| || ||||||||||| ||| |||| | || | Sbjct 100073 AAAATTAGCCTCTGTTGATCAGGAGGGATTCCTTCTTTGTC-CTGAATTTTGGCCTTGAC 100131 Query 138540 TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 138599 | ||| | ||| || | || || ||||||| || | ||||| || || || || || Sbjct 100132 GTTTTCAATGGTATCACTGGATTCTACCTCGAGTGTGATAGTTTTGCCTGTGAGCGTCTT 100191 Query 138600 TACAAAAATCTGCAT 138614 || ||||||||||| Sbjct 100192 CACGAAAATCTGCAT 100206 Score = 95.1 bits (104), Expect = 1e-14 Identities = 136/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 138424 TCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAG 138483 |||||||||||||||||||| || | || || |||||||||||||| |||| | Sbjct 93480 TCCTTTTGAATGTTGTAGTCACTGAGTGTGCGACCATCCTCGAGTTGTTTTCCGGCGAAA 93539 Query 138484 ATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGT 138543 || ||||| || ||||| ||||| ||||| || ||||| |||||| || | | | Sbjct 93540 ATGAGACGTTGCTGGTCAGGAGGAATACCCTCCTTGTCCTGGATTTTGGCCTTCACGTTT 93599 Query 138544 TCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACA 138603 || | || ||| | | || ||||| | || | || || || || || || || || Sbjct 93600 TCAATTGTATCGCTGGGTTCAACCTCAAGTGTGATAGTCTTCCCCGTGAGGGTCTTGACG 93659 Query 138604 AAAATCTGCATG 138615 || ||||||||| Sbjct 93660 AAGATCTGCATG 93671 Score = 95.1 bits (104), Expect = 1e-14 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 138405 AACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTC 138464 ||| | ||| | | | ||||| ||||| || |||||||| | ||||| ||| || Sbjct 100453 AACAAGATGGAGGGTGGACTCTTTTTGGATATTGTAGTCTGAAAGGGTACGACCGTCTTC 100512 Query 138465 GAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGT 138524 ||||||||||||| | |||| | | |||||| || ||||| |||||||||||||| Sbjct 100513 AAGTTGTTTACCGGCAAAGATCAACCTCTGTTGATCTGGAGGGATACCTTCTTTGTCTTG 100572 Query 138525 GATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTT 138584 |||||| ||| | | || | ||||| | | ||| || || | || | || || Sbjct 100573 GATTTTCGCTTTAACATTCTCAATTGTGTCAGAGGGCTCAACTTCCAGGGTAATAGTCTT 100632 Query 138585 ACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || || || ||||| || || |||||||| Sbjct 100633 TCCGGTAAGGGTTTTCACGAAGATCTGCAT 100662 Score = 87.8 bits (96), Expect = 2e-12 Identities = 139/197 (71%), Gaps = 2/197 (1%) Strand=Plus/Plus Query 138419 TTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGG 138478 |||| || || ||||| ||||| ||| || ||||| |||||||||||||| || | Sbjct 92188 TTGATTCTTTCTGAATATTGTAATCGGACAGGGTACGTCCATCCTCGAGTTGTTTTCCAG 92247 Query 138479 AATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTG-TTTT 138537 | || |||||||| || || || || || ||||| || || ||| |||||| ||| Sbjct 92248 CGAATATAAGACGCTGCTGATCAGGGGGGATGCCTTCCTTATC-CTGAATTTTTGCCTTT 92306 Query 138538 AATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTT 138597 | | ||| | ||| || | | ||| ||||| | || | ||||| || |||| || Sbjct 92307 ACGTTTTCGATGGTATCCGAGGGCTCAACCTCAAGGGTTATGGTTTTTCCGGTCAACGTC 92366 Query 138598 TTTACAAAAATCTGCAT 138614 || || ||||| ||||| Sbjct 92367 TTAACGAAAATTTGCAT 92383 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 ||| || || | ||||| || | ||| | | |||||||||||||| || || || Sbjct 93671 GCCACCGCGAAGCCGCAAGACGAGATGCAGTGTCGACTCCTTTTGAATATTATAATCTGA 93730 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 | ||||| ||| || ||||| || || | | |||| ||||| || || |||||||| Sbjct 93731 GAGGGTACGGCCGTCTTCCAGTTGCTTGCCAGCAAAGATCAGACGTTGCTGATCCGGAGG 93790 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566 || || ||||| || ||||||| || | | ||| | || ||| | | || || Sbjct 93791 GATGCCCTCTTTATCCTGGATTTTTGCCTTCACATTTTCAATTGTATCGCTGGGTTCAAC 93850 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || | || | ||||| ||||| || || || ||||| |||||||| Sbjct 93851 TTCAAGGGTGATGGTTTTTCCAGTGAGCGTCTTCACAAAGATCTGCAT 93898 Score = 87.8 bits (96), Expect = 2e-12 Identities = 138/195 (71%), Gaps = 2/195 (1%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 ||||| ||||| || |||||||| | |||||| ||| || | ||||| || | | Sbjct 100697 GACTCTTTTTGGATATTGTAGTCCGAAAGAGTACGTCCGTCTTCCAACTGTTTTCCAGCA 100756 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||||| | ||||||||| || || ||||| || ||||| ||| | |||| || | Sbjct 100757 AAGATTAATCTCTGTTGGTCTGGGGGAATACCCTCCTTGTCT-TGAATCTTTGCCTTGAC 100815 Query 138541 -TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 138599 | ||| | || || | || |||||||| | || | || ||||| || || ||||| Sbjct 100816 ATTTTCGATTGTATCTGAAGATTCCACCTCAAGGGTGATAGTCTTACCGGTTAGGGTTTT 100875 Query 138600 TACAAAAATCTGCAT 138614 || ||||||||||| Sbjct 100876 CACGAAAATCTGCAT 100890 >seq19980 Length=299602 Score = 102 bits (112), Expect = 8e-17 Identities = 139/194 (72%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 ||||||||||| || |||||||| | |||||| || || ||||||||||||| | Sbjct 144701 GACTCCTTTTGGATATTGTAGTCTGAAAGAGTACGTCCATCTTCTAGTTGTTTACCGGCA 144642 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 ||||||| | ||| || || || || ||||| |||||||| |||||| || | Sbjct 144641 AAGATTAGCCTCTGCTGATCAGGGGGGATACCCTCTTTGTCTTGGATTTTCGCCTTAACA 144582 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | || | ||||| | | || ||||| | || | ||||| || || ||||| ||| Sbjct 144581 TTCTCAATTGTGTCAGAAGGTTCAACCTCCAGGGTGATGGTTTTCCCGGTGAGAGTCTTT 144522 Query 138601 ACAAAAATCTGCAT 138614 ||||| |||||||| Sbjct 144521 ACAAAGATCTGCAT 144508 Score = 89.7 bits (98), Expect = 5e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || ||||| | | || || | ||| | | | ||||| |||||||||||||||||| Sbjct 145190 CCTCCTCGGAGTCTCAGCACCAGATGAAGGGTAGACTCTTTTTGAATGTTGTAGTCGGAG 145131 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || || |||||||| ||||| || | | || | | ||||| || || || Sbjct 145130 AGCGTGCGACCATCCTCGAGCTGTTTGCCTGCGAAAATCAACCTTTGTTGATCGGGGGGA 145071 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGT-TCCACGGTGTCGGTCGACTCCAC 138566 || ||||| ||||| ||| |||| | ||||| | || | || ||| | | ||| || Sbjct 145070 ATTCCTTCCTTGTCT-TGAATTTTGGCTTTAACGTTCTCAATCGTATCGCTTGGCTCGAC 145012 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || | || | |||||| || || || ||||| |||||||||||||| Sbjct 145011 TTCAAGAGTGATCGTTTTTCCGGTAAGCGTTTTAACAAAAATCTGCAT 144964 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || ||||||| |||||| || | ||| | | | || || || || |||||||| || Sbjct 144506 CCACCTCGCAGACGCAAGACAAGATGAAGGGTCGATTCTTTCTGGATGTTGTAATCAGAA 144447 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | |||||| ||| || | |||||||| | | |||||| | ||| ||||| || || Sbjct 144446 AGAGTACGTCCGTCTTCCAACTGTTTACCAGCAAAGATTAACCTCTGCTGGTCTGGGGGA 144387 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT-TGTTCCACGGTGTCGGTCGACTCCAC 138566 || || || || || ||| | || | || | | ||| | || || | |||||||| Sbjct 144386 ATCCCCTCCTTATCT-TGAATCTTCGCCTTGACATTTTCGATTGTATCAGAAGACTCCAC 144328 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 ||| | || | || || || || | |||||| |||||||| ||||| Sbjct 144327 CTCAAGGGTGATAGTCTTTCCGGTTAAAGTTTTCACAAAAATTTGCAT 144280 >seq19563 Length=274849 Score = 87.8 bits (96), Expect = 2e-12 Identities = 408/647 (63%), Gaps = 12/647 (2%) Strand=Plus/Plus Query 153309 TCGCAGCTAGCCTCGAGCGCGCCATAGTATATGGTTTCGGCGATTTGTTTATTGAGAACG 153368 || ||||| || || | ||||| ||||| || || || |||| |||| || || | Sbjct 230519 TCACAGCTTGCTTCCAAAGCGCCGTAGTAGATAGTCTCAAAGATTAGTTTGTTAAGTTCC 230578 Query 153369 GCCGCTTCTTCGCTCTCGTACGGCATGCGCAGCAGCACAAAGGCGTCGGCCAGACCCTGG 153428 ||||| || || |||| | |||| | | || | |||||| || || ||| Sbjct 230579 ATTGCTTCGGGACTGTCAAACGGTAAACGCAATATGATGAAAGTGTCGGCAAGCCCTTGG 230638 Query 153429 ATACCGACGCCGATGGGTCGATGCTTCTCGTTGCTGCGCCTCGCGCTCGCTATGGGATAG 153488 | || | || || |||||||| | ||||| || || | | |||||| Sbjct 230639 ACTCCAATTCCAATCGGTCGATGACGTTTATTGCTATGCTCTGCTTCTGGAACTGGATAG 230698 Query 153489 TGATTGCGATCGATAATTTTGTTGAGGTTGCGCACCACCACTTTAGTTATCGCCTTAAGT 153548 | || ||||||||| ||||||||||| || ||| |||||||| | | | || ||| Sbjct 230699 TAGTTAACATCGATAATCTTGTTGAGGTTTCGTGTCACAACTTTAGTAACCTCTTTGAGT 230758 Query 153549 TTCTCGAAATCATAGGTCATTTCGTCGACGCGTACGCATCGATTCACGGCAATAGACGCC 153608 || | || ||| | | ||| | ||| | ||||| | || | ||||| Sbjct 230759 TTTCCAAAGTCAAACTTGCCTTCATTGACAA------AGCGATTGAGTGCGAGTGACGCA 230812 Query 153609 AGATTACAGACGGCCGTCTCTTCGGCGTCGCTGTACTGCACGATCTCGGCGCAGAGGTTG 153668 || || || || || | || || | | |||| | || || | || | || Sbjct 230813 AGGTTGCAAACTGCGATTTCATCAGGAGAGGAATACTCGATTATTTCCGTACATAAATTA 230872 Query 153669 CTGCATTTTATGACGCCCAAATTTTGCTGATTGCTTTTGCGATTGCACGCGTCTTTGAAG 153728 ||| || || || | ||||||||||||||| || | || || || ||||| | Sbjct 230873 GAGCACTTGATTGTTCCAAGATTTTGCTGATTGCTCTTTTGGTTACAAGCATCTTTATAT 230932 Query 153729 AGCATGTACGGTCCGCCGGTCTCGACTTGCGTTTCGACGAT---AAACCTATGCAGGTCC 153785 | ||||| ||| ||| || || | ||| |||||| || | ||| | || | | Sbjct 230933 AAGATGTAAGGTGTGCCTGTTTCAATTTGACTTTCGAGAATGGCATACCAA---AGTTTC 230989 Query 153786 TGCGCTCGCACCCGCTGCCGATAGCGGCCCTCGCTCTCGTATCGCTCGTACAGTCGCTCA 153845 || ||| ||| | || |||||||||||| || ||| ||||||| ||| || Sbjct 230990 TGGGCTTCTACCTGGCGCATGAAGCGGCCCTCGCGTTCATATTGCTCGTAGAGTTTTTCG 231049 Query 153846 AACTCGTCGCCGTAGCAGTCGGCGAGGCCGGGACACTGATGCGGACACATCAGCGACCAC 153905 ||||| | || | |||||| || || ||||| |||| | ||||||| |||||| Sbjct 231050 AACTCCTTTCCCCAACAGTCGCTCAGCCCCGGACATTGATTGGAGCACATCAAAGACCAC 231109 Query 153906 ATATCGTCGGCGTTGACGCGTCGCATGAACAGATCCGGCACCCAGAG 153952 | | | | ||| || ||||| ||||| || || ||||| || Sbjct 231110 TGGCCATTTTCCTCGACTCGACGCATAAACAGGTCAGGTACCCAAAG 231156 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496135555330560