Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Varroa_20destructor_20[genbank_20GCA_5F000181155.2_202017-05-09]
20,448 sequences; 331,927,360 total letters
Query= NC_011423.1
Length=111724
Score E
Sequences producing significant alignments: (Bits) Value
seq19980 132 3e-26
seq7231 96.9 2e-15
>seq19980
Length=299602
Score = 132 bits (146), Expect = 3e-26
Identities = 166/228 (73%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009
|| ||||| | ||| | || | |||||||||||| |||||||| |||||||| ||| |
Sbjct 145190 CCTCCTCGGAGTCTCAGCACCAGATGAAGGGTAGACTCTTTTTGAATGTTGTAGTCGGAG 145131
Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069
|| | | | || || | |||||||| ||| | ||||| | ||||| ||| |||
Sbjct 145130 AGCGTGCGACCATCCTCGAGCTGTTTGCCTGCGAAAATCAACCTTTGTTGATCGGGGGGA 145071
Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129
|||||||||||||| ||||||| ||| || | || || |||||||| || ||
Sbjct 145070 ATTCCTTCCTTGTCTTGAATTTTGGCTTTAACGTTCTCAATCGTATCGCTTGGCTCGACT 145011
Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177
|| | || || ||||| || || || ||||| |||||||| ||||||
Sbjct 145010 TCAAGAGTGATCGTTTTTCCGGTAAGCGTTTTAACAAAAATCTGCATA 144963
Score = 107 bits (118), Expect = 1e-18
Identities = 160/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009
|||||||||| | || || | ||||||||| || ||||| || |||||||||||
Sbjct 144506 CCACCTCGCAGACGCAAGACAAGATGAAGGGTCGATTCTTTCTGGATGTTGTAATCAGAA 144447
Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069
||| | | ||||||| || ||||| ||||| | || || | ||| ||||| |||
Sbjct 144446 AGAGTACGTCCGTCTTCCAACTGTTTACCAGCAAAGATTAACCTCTGCTGGTCTGGGGGA 144387
Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129
|| || ||||| || ||| || || ||| |||| || ||||| | || ||
Sbjct 144386 ATCCCCTCCTTATCTTGAATCTTCGCCTTGACATTTTCGATTGTATCAGAAGACTCCACC 144327
Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176
|| | ||| || || || || || | |||||| ||||||||||||||
Sbjct 144326 TCAAGGGTGATAGTCTTTCCGGTTAAAGTTTTCACAAAAATTTGCAT 144280
Score = 89.7 bits (98), Expect = 4e-13
Identities = 142/204 (70%), Gaps = 0/204 (0%)
Strand=Plus/Minus
Query 14974 TGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTGT 15033
|| ||||| || || ||||| || ||||| || || | | | ||||| | ||
Sbjct 144938 TGGAGGGTGGACTCCTTTTGAATATTGTAGTCCGAAAGGGTGCGTCCATCTTCAAGCTGC 144879
Query 15034 TTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTG 15093
|| || || | ||||| | |||||| ||| ||||||||||||||||| ||| |||
Sbjct 144878 TTTCCGGCAAAGATCAATCTCTGTTGATCGGGGGGAATTCCTTCCTTGTCTTGAATCTTG 144819
Query 15094 CTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTC 15153
||||| | || || ||||| | || || || ||||| ||||| || || ||
Sbjct 144818 GCCTTTACGTTCTCAATTGTATCAGAAGGCTCCACTTCCAAGGTGATGGTCTTCCCAGTA 144759
Query 15154 AGAGTTTTTACAAAAATTTGCATA 15177
|| ||||| || ||||||||||||
Sbjct 144758 AGGGTTTTGACGAAAATTTGCATA 144735
>seq7231
Length=219762
Score = 96.9 bits (106), Expect = 2e-15
Identities = 146/205 (71%), Gaps = 2/205 (1%)
Strand=Plus/Plus
Query 14974 TGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTGT 15033
|| || ||||| ||||| || ||||| || || || ||| ||||||| | ||
Sbjct 100232 TGTAGAGTAGACTCTTTCTGAATGTTATAGTCTGATAGCGTTCGGCCGTCTTCAAGCTGC 100291
Query 15034 TTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAAT-TTT 15092
|||||||| | || || | || || ||| ||||| ||||||||||| ||| |||
Sbjct 100292 TTGCCAGCAAAGATTAACCTTTGCTGATCGGGCGGAATACCTTCCTTGTCTTGAATCTTT 100351
Query 15093 GCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGT 15152
|| || || |||| || ||||||||| ||| || |||| || || || || || ||
Sbjct 100352 GC-CTTAACGTTTTCGATTGTATCGCTAGGTTCAACCTCTAGAGTGATCGTCTTTCCGGT 100410
Query 15153 CAGAGTTTTTACAAAAATTTGCATA 15177
||| |||||||| || || ||||||
Sbjct 100411 CAGCGTTTTTACGAAGATCTGCATA 100435
Score = 93.3 bits (102), Expect = 3e-14
Identities = 143/204 (70%), Gaps = 0/204 (0%)
Strand=Plus/Plus
Query 14974 TGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTGT 15033
|| || || || ||||| || |||||||| || || |||| |||| || | |||
Sbjct 92596 TGGAGCGTTGATTCTTTCTGGATGTTGTAGTCTGACAGTGTTCTACCGTCCTCGAGCTGT 92655
Query 15034 TTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTG 15093
|| || || | ||||| ||||| ||||| || || ||||||||||| ||||||
Sbjct 92656 TTACCCGCAAAGATCAATCGCTGCTGGTCAGGCGGGATACCTTCCTTGTCCTGAATTTTC 92715
Query 15094 CTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTC 15153
|| || | || || ||||| ||| || || ||||||||||| || || |||
Sbjct 92716 GCCTTCACGTTCTCGATGGTATCTGAGGGTTCGACCTCCAAGGTAATGGTCTTCCCCGTC 92775
Query 15154 AGAGTTTTTACAAAAATTTGCATA 15177
| ||| ||||| || |||||||||
Sbjct 92776 AAAGTCTTTACGAAGATTTGCATA 92799
Score = 84.2 bits (92), Expect = 2e-11
Identities = 144/209 (69%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 14968 ACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCT 15027
|| || || || || || ||||| || || ||||||||| || | | | || ||
Sbjct 92175 ACCAAGTGCAGAGTTGATTCTTTCTGAATATTGTAATCGGACAGGGTACGTCCATCCTCG 92234
Query 15028 AATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAA 15087
| |||||| |||||| |||| | |||||| || || || || |||||||| || |
Sbjct 92235 AGTTGTTTTCCAGCGAATATAAGACGCTGCTGATCAGGGGGGATGCCTTCCTTATCCTGA 92294
Query 15088 ATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTA 15147
||||| ||||| |||| || ||||| || || || | ||| ||||||||
Sbjct 92295 ATTTTTGCCTTTACGTTTTCGATGGTATCCGAGGGCTCAACCTCAAGGGTTATGGTTTTT 92354
Query 15148 CCTGTCAGAGTTTTTACAAAAATTTGCAT 15176
|| |||| || || || |||||||||||
Sbjct 92355 CCGGTCAACGTCTTAACGAAAATTTGCAT 92383
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 357302934339680
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |