Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Varroa_20destructor_20[genbank_20GCA_5F000181155.2_202017-05-09] 20,448 sequences; 331,927,360 total letters Query= NC_011423.1 Length=111724 Score E Sequences producing significant alignments: (Bits) Value seq19980 132 3e-26 seq7231 96.9 2e-15 >seq19980 Length=299602 Score = 132 bits (146), Expect = 3e-26 Identities = 166/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 || ||||| | ||| | || | |||||||||||| |||||||| |||||||| ||| | Sbjct 145190 CCTCCTCGGAGTCTCAGCACCAGATGAAGGGTAGACTCTTTTTGAATGTTGTAGTCGGAG 145131 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 || | | | || || | |||||||| ||| | ||||| | ||||| ||| ||| Sbjct 145130 AGCGTGCGACCATCCTCGAGCTGTTTGCCTGCGAAAATCAACCTTTGTTGATCGGGGGGA 145071 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 |||||||||||||| ||||||| ||| || | || || |||||||| || || Sbjct 145070 ATTCCTTCCTTGTCTTGAATTTTGGCTTTAACGTTCTCAATCGTATCGCTTGGCTCGACT 145011 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 || | || || ||||| || || || ||||| |||||||| |||||| Sbjct 145010 TCAAGAGTGATCGTTTTTCCGGTAAGCGTTTTAACAAAAATCTGCATA 144963 Score = 107 bits (118), Expect = 1e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 |||||||||| | || || | ||||||||| || ||||| || ||||||||||| Sbjct 144506 CCACCTCGCAGACGCAAGACAAGATGAAGGGTCGATTCTTTCTGGATGTTGTAATCAGAA 144447 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 ||| | | ||||||| || ||||| ||||| | || || | ||| ||||| ||| Sbjct 144446 AGAGTACGTCCGTCTTCCAACTGTTTACCAGCAAAGATTAACCTCTGCTGGTCTGGGGGA 144387 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 || || ||||| || ||| || || ||| |||| || ||||| | || || Sbjct 144386 ATCCCCTCCTTATCTTGAATCTTCGCCTTGACATTTTCGATTGTATCAGAAGACTCCACC 144327 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || | ||| || || || || || | |||||| |||||||||||||| Sbjct 144326 TCAAGGGTGATAGTCTTTCCGGTTAAAGTTTTCACAAAAATTTGCAT 144280 Score = 89.7 bits (98), Expect = 4e-13 Identities = 142/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 14974 TGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTGT 15033 || ||||| || || ||||| || ||||| || || | | | ||||| | || Sbjct 144938 TGGAGGGTGGACTCCTTTTGAATATTGTAGTCCGAAAGGGTGCGTCCATCTTCAAGCTGC 144879 Query 15034 TTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTG 15093 || || || | ||||| | |||||| ||| ||||||||||||||||| ||| ||| Sbjct 144878 TTTCCGGCAAAGATCAATCTCTGTTGATCGGGGGGAATTCCTTCCTTGTCTTGAATCTTG 144819 Query 15094 CTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTC 15153 ||||| | || || ||||| | || || || ||||| ||||| || || || Sbjct 144818 GCCTTTACGTTCTCAATTGTATCAGAAGGCTCCACTTCCAAGGTGATGGTCTTCCCAGTA 144759 Query 15154 AGAGTTTTTACAAAAATTTGCATA 15177 || ||||| || |||||||||||| Sbjct 144758 AGGGTTTTGACGAAAATTTGCATA 144735 >seq7231 Length=219762 Score = 96.9 bits (106), Expect = 2e-15 Identities = 146/205 (71%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 14974 TGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTGT 15033 || || ||||| ||||| || ||||| || || || ||| ||||||| | || Sbjct 100232 TGTAGAGTAGACTCTTTCTGAATGTTATAGTCTGATAGCGTTCGGCCGTCTTCAAGCTGC 100291 Query 15034 TTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAAT-TTT 15092 |||||||| | || || | || || ||| ||||| ||||||||||| ||| ||| Sbjct 100292 TTGCCAGCAAAGATTAACCTTTGCTGATCGGGCGGAATACCTTCCTTGTCTTGAATCTTT 100351 Query 15093 GCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGT 15152 || || || |||| || ||||||||| ||| || |||| || || || || || || Sbjct 100352 GC-CTTAACGTTTTCGATTGTATCGCTAGGTTCAACCTCTAGAGTGATCGTCTTTCCGGT 100410 Query 15153 CAGAGTTTTTACAAAAATTTGCATA 15177 ||| |||||||| || || |||||| Sbjct 100411 CAGCGTTTTTACGAAGATCTGCATA 100435 Score = 93.3 bits (102), Expect = 3e-14 Identities = 143/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 14974 TGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTGT 15033 || || || || ||||| || |||||||| || || |||| |||| || | ||| Sbjct 92596 TGGAGCGTTGATTCTTTCTGGATGTTGTAGTCTGACAGTGTTCTACCGTCCTCGAGCTGT 92655 Query 15034 TTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTG 15093 || || || | ||||| ||||| ||||| || || ||||||||||| |||||| Sbjct 92656 TTACCCGCAAAGATCAATCGCTGCTGGTCAGGCGGGATACCTTCCTTGTCCTGAATTTTC 92715 Query 15094 CTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTC 15153 || || | || || ||||| ||| || || ||||||||||| || || ||| Sbjct 92716 GCCTTCACGTTCTCGATGGTATCTGAGGGTTCGACCTCCAAGGTAATGGTCTTCCCCGTC 92775 Query 15154 AGAGTTTTTACAAAAATTTGCATA 15177 | ||| ||||| || ||||||||| Sbjct 92776 AAAGTCTTTACGAAGATTTGCATA 92799 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 14968 ACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCT 15027 || || || || || || ||||| || || ||||||||| || | | | || || Sbjct 92175 ACCAAGTGCAGAGTTGATTCTTTCTGAATATTGTAATCGGACAGGGTACGTCCATCCTCG 92234 Query 15028 AATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAA 15087 | |||||| |||||| |||| | |||||| || || || || |||||||| || | Sbjct 92235 AGTTGTTTTCCAGCGAATATAAGACGCTGCTGATCAGGGGGGATGCCTTCCTTATCCTGA 92294 Query 15088 ATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTA 15147 ||||| ||||| |||| || ||||| || || || | ||| |||||||| Sbjct 92295 ATTTTTGCCTTTACGTTTTCGATGGTATCCGAGGGCTCAACCTCAAGGGTTATGGTTTTT 92354 Query 15148 CCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || |||| || || || ||||||||||| Sbjct 92355 CCGGTCAACGTCTTAACGAAAATTTGCAT 92383 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 357302934339680