Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Varroa_20destructor_20[genbank_20GCA_5F000181155.2_202017-05-09] 20,448 sequences; 331,927,360 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq19980 132 5e-26 seq7231 127 2e-24 >seq19980 Length=299602 Score = 132 bits (146), Expect = 5e-26 Identities = 169/229 (74%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 || || || | || || ||||| ||| | ||||||||||||||||| ||||| ||| Sbjct 145190 CCTCCTCGGAGTCTCAGCACCAGATGAAGGGTAGACTCTTTTTGAATGTTGTAGTCGGAG 145131 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | ||||||| ||| || |||||||| || ||| | ||||| | || |||||||| || Sbjct 145130 AGCGTGCGACCATCCTCGAGCTGTTTGCCTGCGAAAATCAACCTTTGTTGATCGGGGGGA 145071 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGA--GTTGTTCGACGGTGTCCGTACTCTCGA 127064 || || ||||||| | ||| ||| |||| | ||| || | || || | ||||| Sbjct 145070 ATTCCTTCCTTGT-CTTGAATTTTGGCTTTAACGTT-CTCAATCGTATCGCTTGGCTCGA 145013 Query 127065 CTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 |||| | || | |||||| ||||| || ||||| |||||||||||||| Sbjct 145012 CTTCAAGAGTGATCGTTTTTCCGGTAAGCGTTTTAACAAAAATCTGCAT 144964 Score = 89.7 bits (98), Expect = 5e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || ||||| |||||||||||||| || | ||||| ||| || ||||| ||||| Sbjct 144932 GTGGACTCCTTTTGAATATTGTAGTCCGAAAGGGTGCGTCCATCTTCAAGCTGCTTTCCG 144873 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 || ||||||||| ||| |||||||| || || || |||||||| || || ||| Sbjct 144872 GCAAAGATCAATCTCTGTTGATCGGGGGGAATTCCTTCCTTGTCTTGAATCTTGGCCTTT 144813 Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096 | | || | || || | | ||| ||||| | ||| | || || || || || ||| Sbjct 144812 ACGTTCTCAATTGTATCAGAAGGCTCCACTTCCAAGGTGATGGTCTTCCCAGTAAGGGTT 144753 Query 127097 TTTACAAAAATCTGCAT 127113 || || ||||| ||||| Sbjct 144752 TTGACGAAAATTTGCAT 144736 >seq7231 Length=219762 Score = 127 bits (140), Expect = 2e-24 Identities = 167/229 (73%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 126886 TCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCC 126945 ||| || || | |||| |||||| || | || || ||||| ||||||||||||||| Sbjct 92156 TCCTCCACGAAGGCGCAGCACCAAGTGCAGAGTTGATTCTTTCTGAATATTGTAATCGGA 92215 Query 126946 CATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGG 127005 || || || ||| || || |||||||||||| | || | ||||||||||| || || Sbjct 92216 CAGGGTACGTCCATCCTCGAGTTGTTTTCCAGCGAATATAAGACGCTGCTGATCAGGGGG 92275 Query 127006 TATGCCCTCCTTGTCCGTGATTTTCTG-CTTGAGTTGTTCGACGGTGTCCGTACTCTCGA 127064 ||||| ||||| ||| ||| ||| || ||| | | ||||| ||| |||| ||| | Sbjct 92276 GATGCCTTCCTTATCC-TGAATTTTTGCCTTTACGTTTTCGATGGTATCCGAGGGCTCAA 92334 Query 127065 CTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 | || | ||| | ||||| ||||||| || || || ||||| ||||| Sbjct 92335 CCTCAAGGGTTATGGTTTTTCCGGTCAACGTCTTAACGAAAATTTGCAT 92383 Score = 114 bits (126), Expect = 1e-20 Identities = 142/192 (74%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 126923 TCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAG 126982 || || ||||| || |||||| | ||||| ||| || | |||||||||||| | Sbjct 93252 TCCTTCTGAATGTTATAATCGTTAAGGGTGCGGCCATCCTCCAACTGTTTTCCAGCAAAA 93311 Query 126983 ATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGC-TTGAGTTG 127041 ||||| || ||||| || ||||| |||||||| |||||| ||| || ||| |||| | Sbjct 93312 ATCAAACGTTGCTGGTCAGGAGGAATGCCCTCTTTGTCCTGGATCTT-TGCTTTGACATT 93370 Query 127042 TTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTAC 127101 ||| | ||||| | ||||||||| | || | ||| |||||||| ||||| || || Sbjct 93371 TTCAATTGTGTCGGATGGCTCGACTTCAAGCGTGATCGTCTTGCCGGTGAGAGTCTTGAC 93430 Query 127102 AAAAATCTGCAT 127113 ||| |||||||| Sbjct 93431 AAAGATCTGCAT 93442 Score = 98.7 bits (108), Expect = 9e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 |||||||| | ||||| || | ||| | || ||||| ||||||||||| ||||| Sbjct 93672 CCACCGCGAAGCCGCAAGACGAGATGCAGTGTCGACTCCTTTTGAATATTATAATCTGAG 93731 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | || || || || || || || ||||| |||||| || |||||||| ||||| Sbjct 93732 AGGGTACGGCCGTCTTCCAGTTGCTTGCCAGCAAAGATCAGACGTTGCTGATCCGGAGGG 93791 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 |||||||| || ||| |||||| ||| | | ||| | || || | || ||| Sbjct 93792 ATGCCCTCTTTATCCTGGATTTTTGCCTTCACATTTTCAATTGTATCGCTGGGTTCAACT 93851 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || | ||| | ||||| || || || || || ||||| |||||||| Sbjct 93852 TCAAGGGTGATGGTTTTTCCAGTGAGCGTCTTCACAAAGATCTGCAT 93898 Score = 98.7 bits (108), Expect = 9e-16 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 || ||||| | || | || | ||| | ||| ||||||||||| |||||||| || Sbjct 100664 CCTCCGCGAAGTCTAAGTACAAGATGGAGCGTGGACTCTTTTTGGATATTGTAGTCCGAA 100723 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | || || || || | |||||||||||| |||| |||| ||| || || || || Sbjct 100724 AGAGTACGTCCGTCTTCCAACTGTTTTCCAGCAAAGATTAATCTCTGTTGGTCTGGGGGA 100783 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTG-CTTGAGTTGTTCGACGGTGTCCGTACTCTCGAC 127065 || |||||||||| | ||| | | || ||||| | ||||| || || | | || || Sbjct 100784 ATACCCTCCTTGT-CTTGAATCTTTGCCTTGACATTTTCGATTGTATCTGAAGATTCCAC 100842 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || | ||| | || || ||||| || ||||| || ||||||||||| Sbjct 100843 CTCAAGGGTGATAGTCTTACCGGTTAGGGTTTTCACGAAAATCTGCAT 100890 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 126886 TCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCC 126945 ||| ||||| | || | ||||| ||| | ||||||||||| ||||| || || || Sbjct 99979 TCCTCCGCGGAGTCTGAGCACCAGATGAAGAGTAGACTCTTTCTGAATGTTATAGTCAGA 100038 Query 126946 CATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGG 127005 | || ||| ||| || |||||||| ||||| | || | | ||| ||||| ||||| Sbjct 100039 TAGAGTACGACCATCTTCGAGCTGTTTACCAGCAAAAATTAGCCTCTGTTGATCAGGAGG 100098 Query 127006 TATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGAC 127065 || || || |||||| ||||| ||||| | ||| | ||| || | || || Sbjct 100099 GATTCCTTCTTTGTCCTGAATTTTGGCCTTGACGTTTTCAATGGTATCACTGGATTCTAC 100158 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 |||| || | |||||||| || || || || || ||||||||||| Sbjct 100159 CTCGAGTGTGATAGTTTTGCCTGTGAGCGTCTTCACGAAAATCTGCAT 100206 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || || || || || |||||||||||| | |||||| || |||||||| || ||| Sbjct 93930 GTCGATTCCTTCTGTATATTGTAATCGGAGAGTGTGCGACCGTCCTCTAGCTGCTTGCCA 93989 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 ||| | |||| ||||||||||| || || || || || || ||| ||| || |||| Sbjct 93990 GCGAAAATCAGACGCTGCTGATCTGGTGGAATACCTTCTTTATCCTGGATCTTTGTCTTG 94049 Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096 | | |||| ||||||| | ||| || || | || | ||||| || || | ||| Sbjct 94050 ACGTTCTCGATCGTGTCCGATCCCTCTACGTCTAGAGTGATAGTTTTCCCAGTTAATGTT 94109 Query 127097 TTTACAAAAATCTGCAT 127113 || ||||| || ||||| Sbjct 94110 TTCACAAAGATTTGCAT 94126 Score = 91.5 bits (100), Expect = 1e-13 Identities = 144/204 (71%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 126911 TGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGT 126970 |||| ||||||||||| ||||| || || || | ||| || || || ||||| Sbjct 100232 TGTAGAGTAGACTCTTTCTGAATGTTATAGTCTGATAGCGTTCGGCCGTCTTCAAGCTGC 100291 Query 126971 TTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTC 127030 || ||||| |||| || | ||||||||||| || || || ||||||| | ||| | | Sbjct 100292 TTGCCAGCAAAGATTAACCTTTGCTGATCGGGCGGAATACCTTCCTTGT-CTTGAATCTT 100350 Query 127031 TG-CTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGT 127089 || ||| | | ||||| || || || || || || | || | ||| || ||||| Sbjct 100351 TGCCTTAACGTTTTCGATTGTATCGCTAGGTTCAACCTCTAGAGTGATCGTCTTTCCGGT 100410 Query 127090 CAGAGTTTTTACAAAAATCTGCAT 127113 ||| |||||||| || |||||||| Sbjct 100411 CAGCGTTTTTACGAAGATCTGCAT 100434 Score = 87.8 bits (96), Expect = 2e-12 Identities = 138/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 126916 CGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCC 126975 ||| || ||||| || || ||||| || || || | | || || |||||||| || Sbjct 92601 CGTTGATTCTTTCTGGATGTTGTAGTCTGACAGTGTTCTACCGTCCTCGAGCTGTTTACC 92660 Query 126976 AGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTT 127035 || |||||||||||||||| || || || || || ||||||||| |||||| ||| Sbjct 92661 CGCAAAGATCAATCGCTGCTGGTCAGGCGGGATACCTTCCTTGTCCTGAATTTTCGCCTT 92720 Query 127036 GAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGT 127095 | | |||| ||| || | ||||| || | ||| | || || || |||| ||| Sbjct 92721 CACGTTCTCGATGGTATCTGAGGGTTCGACCTCCAAGGTAATGGTCTTCCCCGTCAAAGT 92780 Query 127096 TTTTACAAAAATCTGCAT 127113 ||||| || || ||||| Sbjct 92781 CTTTACGAAGATTTGCAT 92798 Score = 86.0 bits (94), Expect = 6e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || ||||||||||| |||||||| || | || ||| || || || ||||| || Sbjct 100466 GTGGACTCTTTTTGGATATTGTAGTCTGAAAGGGTACGACCGTCTTCAAGTTGTTTACCG 100525 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 || ||||||| | ||| ||||| ||||| || || || ||||| ||||||| || Sbjct 100526 GCAAAGATCAACCTCTGTTGATCTGGAGGGATACCTTCTTTGTCTTGGATTTTCGCTTTA 100585 Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096 | | || | ||||| | ||| ||||| | ||| | || || ||||| || ||| Sbjct 100586 ACATTCTCAATTGTGTCAGAGGGCTCAACTTCCAGGGTAATAGTCTTTCCGGTAAGGGTT 100645 Query 127097 TTTACAAAAATCTGCAT 127113 || || || |||||||| Sbjct 100646 TTCACGAAGATCTGCAT 100662 Score = 84.2 bits (92), Expect = 2e-11 Identities = 133/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 126923 TCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAG 126982 || || || || ||||| || | ||||||| || || || ||||||||||| || Sbjct 92836 TCCTTCTGGATGTTGTAGTCCGATAGCGTGCGACCGTCCTCGAGTTGTTTTCCAGCAAAG 92895 Query 126983 ATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGT 127042 || | ||||| || || || || |||||||| ||||| |||||| || | | Sbjct 92896 ATGAGACGCTGTTGGTCAGGCGGAATGCCCTCTTTGTCTTGAATTTTCGCTTTTACGTTC 92955 Query 127043 TCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACA 127102 || | |||||| | ||| ||||| | || | ||||| || || || ||||| ||| Sbjct 92956 TCAATGGTGTCGCTTGGCTCAACTTCAAGTGTTATTGTTTTTCCCGTAAGGGTTTTCACA 93015 Query 127103 AAAATCTGCAT 127113 ||||||||||| Sbjct 93016 AAAATCTGCAT 93026 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475379261995520