Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Varroa_20destructor_20[genbank_20GCA_5F000181155.2_202017-05-09]
20,448 sequences; 331,927,360 total letters
Query= NC_012639.1
Length=141291
Score E
Sequences producing significant alignments: (Bits) Value
seq7231 141 8e-29
seq19980 131 2e-25
>seq7231
Length=219762
Score = 141 bits (156), Expect = 8e-29
Identities = 162/218 (74%), Gaps = 0/218 (0%)
Strand=Plus/Plus
Query 45131 CACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTC 45190
||| ||||| || || |||||| || || ||||||||| | | ||| ||| ||
Sbjct 93233 CACAAGATGGAGAGTGCTTTCCTTCTGAATGTTATAATCGTTAAGGGTGCGGCCATCCTC 93292
Query 45191 CAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTG 45250
||| |||||||| || | ||||| ||||||||||| || |||||||| ||||| || ||
Sbjct 93293 CAACTGTTTTCCAGCAAAAATCAAACGTTGCTGGTCAGGAGGAATGCCCTCTTTGTCCTG 93352
Query 45251 AATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTT 45310
|| ||| ||||| ||| | |||||||| | ||||||||| || || | ||| ||
Sbjct 93353 GATCTTTGCTTTGACATTTTCAATTGTGTCGGATGGCTCGACTTCAAGCGTGATCGTCTT 93412
Query 45311 GCCGGTTAGAGTTTTTACAAAAATTTGCATCGCGCGAC 45348
|||||| ||||| || ||||| || ||||| ||| ||
Sbjct 93413 GCCGGTGAGAGTCTTGACAAAGATCTGCATTCCGCCAC 93450
Score = 114 bits (126), Expect = 1e-20
Identities = 162/228 (71%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 45113 TCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCT 45172
|||||| || || | || ||| | ||||| |||||||| || || ||||| ||||||
Sbjct 92156 TCCTCCACGAAGGCGCAGCACCAAGTGCAGAGTTGATTCTTTCTGAATATTGTAATCGGA 92215
Query 45173 GACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGG 45232
| ||| ||| || | ||||||||| ||| |||| | || ||||| || || ||
Sbjct 92216 CAGGGTACGTCCATCCTCGAGTTGTTTTCCAGCGAATATAAGACGCTGCTGATCAGGGGG 92275
Query 45233 AATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGAC 45292
|||||||| ||||| ||||||||| || | ||| | ||| || || | ||| ||
Sbjct 92276 GATGCCTTCCTTATCCTGAATTTTTGCCTTTACGTTTTCGATGGTATCCGAGGGCTCAAC 92335
Query 45293 TTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340
|| || || | ||||| ||||| | || || || |||||||||||
Sbjct 92336 CTCAAGGGTTATGGTTTTTCCGGTCAACGTCTTAACGAAAATTTGCAT 92383
Score = 111 bits (122), Expect = 1e-19
Identities = 163/231 (71%), Gaps = 0/231 (0%)
Strand=Plus/Plus
Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170
|| || ||||| |||| ||| || |||||||| || || |||||||| |||||||||||
Sbjct 93669 ATGCCACCGCGAAGCCGCAAGACGAGATGCAGTGTCGACTCCTTTTGAATATTATAATCT 93728
Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230
|| ||| || |||| ||| || || || | |||| |||||||| |||||
Sbjct 93729 GAGAGGGTACGGCCGTCTTCCAGTTGCTTGCCAGCAAAGATCAGACGTTGCTGATCCGGA 93788
Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290
|| ||||| |||||||| || |||||| || | ||| | || ||| | ||
Sbjct 93789 GGGATGCCCTCTTTATCCTGGATTTTTGCCTTCACATTTTCAATTGTATCGCTGGGTTCA 93848
Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341
||||| || || | ||||| || || || || || ||||| || ||||||
Sbjct 93849 ACTTCAAGGGTGATGGTTTTTCCAGTGAGCGTCTTCACAAAGATCTGCATC 93899
Score = 104 bits (114), Expect = 2e-17
Identities = 161/230 (70%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170
|| |||||||| || || | || ||||| ||||| || || ||||||||||| || ||
Sbjct 100661 ATACCTCCGCGAAGTCTAAGTACAAGATGGAGCGTGGACTCTTTTTGGATATTGTAGTCC 100720
Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230
| || || ||||| |||||||| || | || |||| || ||||| ||
Sbjct 100721 GAAAGAGTACGTCCGTCTTCCAACTGTTTTCCAGCAAAGATTAATCTCTGTTGGTCTGGG 100780
Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290
||||| || || || |||||||| ||| |||| ||| | || || ||||| ||
Sbjct 100781 GGAATACCCTCCTTGTCTTGAATCTTTGCCTTGACATTTTCGATTGTATCTGAAGATTCC 100840
Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340
|| || || || | || || |||||||| ||||| || ||||| |||||
Sbjct 100841 ACCTCAAGGGTGATAGTCTTACCGGTTAGGGTTTTCACGAAAATCTGCAT 100890
Score = 98.7 bits (108), Expect = 9e-16
Identities = 162/231 (70%), Gaps = 2/231 (1%)
Strand=Plus/Plus
Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170
|| || || ||||| | | ||| ||||||| || |||||| ||||| || || ||
Sbjct 92797 ATACCGCCACGGAGACGGAGCACGAGATGCAAGGTGCTTTCCTTCTGGATGTTGTAGTCC 92856
Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230
| || | || || | ||||||||| || | || | || || ||||| |||
Sbjct 92857 GATAGCGTGCGACCGTCCTCGAGTTGTTTTCCAGCAAAGATGAGACGCTGTTGGTCAGGC 92916
Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289
|||||||| ||||| ||||||||||| ||| | || | || | ||||||| | |||
Sbjct 92917 GGAATGCCCTCTTTGTCTTGAATTTTCGCTTTTA-CGTTCTCAATGGTGTCGCTTGGCTC 92975
Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340
||||| || || | ||||| || || || ||||| |||||||| |||||
Sbjct 92976 AACTTCAAGTGTTATTGTTTTTCCCGTAAGGGTTTTCACAAAAATCTGCAT 93026
Score = 95.1 bits (104), Expect = 1e-14
Identities = 161/231 (70%), Gaps = 2/231 (1%)
Strand=Plus/Plus
Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170
|| |||||||| | | | || || || || || |||||||| || ||||| ||||||
Sbjct 93897 ATCCCTCCGCGCAAACGGAGGACGAGGTGAAGAGTCGATTCCTTCTGTATATTGTAATCG 93956
Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230
|| || | || || | || || || ||| | |||| || ||||| || ||
Sbjct 93957 GAGAGTGTGCGACCGTCCTCTAGCTGCTTGCCAGCGAAAATCAGACGCTGCTGATCTGGT 94016
Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289
||||| ||||||||||| || || ||| |||| || | || | ||||| || |||
Sbjct 94017 GGAATACCTTCTTTATCCTGGATCTTTGTCTTGA-CGTTCTCGATCGTGTCCGATCCCTC 94075
Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340
|| || ||||| | ||||| || |||| ||||| ||||| ||||||||
Sbjct 94076 TACGTCTAGAGTGATAGTTTTCCCAGTTAATGTTTTCACAAAGATTTGCAT 94126
Score = 91.5 bits (100), Expect = 1e-13
Identities = 155/220 (70%), Gaps = 6/220 (3%)
Strand=Plus/Plus
Query 45132 ACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGAC--GGTTTTAGAATCGT 45189
|| || || ||||||||||| || ||||| || || | ||||| ||| || || |
Sbjct 92590 ACGAGGTGGAGCGTTGATTCTTTCTGGATGTTGTAGT--CTGACAGTGTTCTACCGTCCT 92647
Query 45190 CCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTT 45249
| | ||||| || || | |||||||| |||||||| ||||| || ||||| || || |
Sbjct 92648 CGAGCTGTTTACCCGCAAAGATCAATCGCTGCTGGTCAGGCGGGATACCTTCCTTGTCCT 92707
Query 45250 GAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTT 45308
||||||| || | || | || | ||| || || | ||||| || | |||| ||
Sbjct 92708 GAATTTTCGCCTTCA-CGTTCTCGATGGTATCTGAGGGTTCGACCTCCAAGGTAATGGTC 92766
Query 45309 TTGCCGGTTAGAGTTTTTACAAAAATTTGCATCGCGCGAC 45348
|| || || | ||| ||||| || |||||||| ||| ||
Sbjct 92767 TTCCCCGTCAAAGTCTTTACGAAGATTTGCATACCGCCAC 92806
Score = 82.4 bits (90), Expect = 7e-11
Identities = 156/230 (68%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170
|| ||||| || || | | || ||||| || || || || ||||||||||| || ||
Sbjct 100433 ATACCTCCACGAAGTCGAAGAACAAGATGGAGGGTGGACTCTTTTTGGATATTGTAGTCT 100492
Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230
| ||| | || || | |||||| || || | ||||| | || || || ||
Sbjct 100493 GAAAGGGTACGACCGTCTTCAAGTTGTTTACCGGCAAAGATCAACCTCTGTTGATCTGGA 100552
Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290
|| || |||||||| ||||| ||||| ||| | || | ||||| || | |||
Sbjct 100553 GGGATACCTTCTTTGTCTTGGATTTTCGCTTTAACATTCTCAATTGTGTCAGAGGGCTCA 100612
Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340
||||| || |||| || || ||||| || ||||| || || || |||||
Sbjct 100613 ACTTCCAGGGTAATAGTCTTTCCGGTAAGGGTTTTCACGAAGATCTGCAT 100662
>seq19980
Length=299602
Score = 131 bits (144), Expect = 2e-25
Identities = 174/239 (73%), Gaps = 2/239 (1%)
Strand=Plus/Minus
Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173
||||| ||||| |||| ||| ||||| || || || || ||||| || || || ||| |
Sbjct 145190 CCTCCTCGGAGTCTCAGCACCAGATGAAGGGTAGACTCTTTTTGAATGTTGTAGTCGGAG 145131
Query 45174 ACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGA 45233
| || | ||| || | ||||| |||||| | ||||| | ||| || || || |||
Sbjct 145130 AGCGTGCGACCATCCTCGAGCTGTTTGCCTGCGAAAATCAACCTTTGTTGATCGGGGGGA 145071
Query 45234 ATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGAC 45292
|| ||||| || ||||||| |||| | || | || | || | || ||| | ||||||
Sbjct 145070 ATTCCTTCCTTGTCTTGAA-TTTTGGCTTTAACGTTCTCAATCGTATCGCTTGGCTCGAC 145012
Query 45293 TTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATCGCGCGACCAA 45351
||| ||||| | |||||| ||||| || ||||| |||||||| ||||| ||| || ||
Sbjct 145011 TTCAAGAGTGATCGTTTTTCCGGTAAGCGTTTTAACAAAAATCTGCATACCGCCACGAA 144953
Score = 104 bits (114), Expect = 2e-17
Identities = 161/230 (70%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170
|| || || || || | ||| || ||||| || || ||||| || ||||| || |||||
Sbjct 144509 ATACCACCTCGCAGACGCAAGACAAGATGAAGGGTCGATTCTTTCTGGATGTTGTAATCA 144450
Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230
| || || ||||| ||||| || || | || || | |||||||| ||
Sbjct 144449 GAAAGAGTACGTCCGTCTTCCAACTGTTTACCAGCAAAGATTAACCTCTGCTGGTCTGGG 144390
Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290
||||| || || ||||||||||| || |||| ||| | || || ||||||||
Sbjct 144389 GGAATCCCCTCCTTATCTTGAATCTTCGCCTTGACATTTTCGATTGTATCAGAAGACTCC 144330
Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340
|| || || || | || || ||||||| |||||| ||||||||||||||
Sbjct 144329 ACCTCAAGGGTGATAGTCTTTCCGGTTAAAGTTTTCACAAAAATTTGCAT 144280
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 451887667982080
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