Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Varroa_20destructor_20[genbank_20GCA_5F000181155.2_202017-05-09] 20,448 sequences; 331,927,360 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq19464 114 2e-20 seq19563 98.7 2e-15 >seq19464 Length=44290 Score = 114 bits (126), Expect = 2e-20 Identities = 167/236 (71%), Gaps = 0/236 (0%) Strand=Plus/Plus Query 159911 TTAAACAGGAGGCACGCAAAGTCGCAGTGCAGTCCCTCGTCCCGAGAGATGAACTCGTTG 159970 || |||| || || || ||||| ||||| || ||||| || ||||||| ||| ||| Sbjct 12314 TTGAACATCAGACAGGCGAAGTCTGTGTGCATACCTTCGTCACGTGAGATGAGCTCATTG 12373 Query 159971 GACATGATGAGGCCCGGCATGATCCCACGCGGTTTGAGCCAAAAAATGGCCGCAAAAGCA 160030 | | ||||||| |||||||| || ||| ||| ||||| ||||| || ||||| || Sbjct 12374 CTGAAGGTGAGGCCAGGCATGATACCTCGCTTTTTCAGCCAGAAAATAGCGGCAAACGCC 12433 Query 160031 CCGCTAAAAAAGATCCCCTCCACGGCCGCAAACGCCACGAGCCTCTCACCAAAAGAGGCG 160090 ||||| ||||| || || || || || || || ||||| | | |||||| | | || Sbjct 12434 CCGCTGAAAAAAATGCCTTCGACTGCAGCGAATGCCACAACACGCTCACCGTACGCAGCC 12493 Query 160091 TTGGTGTCATGGGTCCACCTTTTGGCCCATTCAGCCTTCTTTGCGATGCACGGCAT 160146 | || | | ||||| | |||||| ||||||||||| ||||| ||||| Sbjct 12494 TCCTCGTTAGCGATCCACTCTAAGGCCCAATCAGCCTTCTTCTTAATGCATGGCAT 12549 >seq19563 Length=274849 Score = 98.7 bits (108), Expect = 2e-15 Identities = 159/226 (70%), Gaps = 2/226 (1%) Strand=Plus/Plus Query 203833 CTTCGTCTTGTCCACCGTGAACTGAATGGCGTTCACGGCAGGCCTGCTTCTCAGATAGTA 203892 |||||||||||| || ||||||||||| || | | |||||| | | | ||| ||||| Sbjct 229888 CTTCGTCTTGTCTACAGTGAACTGAATCGCTTGAGCTGCAGGCTTCGTACGCAGGTAGTA 229947 Query 203893 CATGCCGGTCTTTAGGCCCTTCTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTCAC 203952 ||| |||||||| || || | ||| || || | |||||| || | | |||| Sbjct 229948 CATTCCGGTCTTGAGACCAAGTTTCCAGCCATAGAAGTGCATCGAGGTTAACTTGCCATA 230007 Query 203953 GTTGGGGTCGGCCATGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCC-CGAT 204011 |||| || || | || | || || || || || || |||||| ||||| || |||| Sbjct 230008 ATTGGTTTCAGCTAGATGGACATTTAGTGATTGACTCTGATCGATG-AAGGCTCCACGAT 230066 Query 204012 CTGCGGCCATATTGATAATGGTCTTCTGCGAAATCTCCCACACCGT 204057 | || ||||| ||||| || | ||||| | |||||||| || || Sbjct 230067 CAGCAGCCATCTTGATGATATTTTTCTGTGGTATCTCCCATACGGT 230112 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 794951958330880