Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Varroa_20destructor_20[genbank_20GCA_5F000181155.2_202017-05-09]
20,448 sequences; 331,927,360 total letters
Query= NC_013772.1
Length=176677
Score E
Sequences producing significant alignments: (Bits) Value
seq19980 120 3e-22
seq7231 118 1e-21
>seq19980
Length=299602
Score = 120 bits (132), Expect = 3e-22
Identities = 165/228 (72%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426
||||||| | | || ||||||||| | ||| ||| ||||| || |||||||||||
Sbjct 145190 CCTCCTCGGAGTCTCAGCACCAGATGAAGGGTAGACTCTTTTTGAATGTTGTAGTCGGAG 145131
Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486
|| ||||| | || |||||||| ||||| ||||| ||||| | || || |||| ||
Sbjct 145130 AGCGTGCGACCATCCTCGAGCTGTTTGCCTGCGAAAATCAACCTTTGTTGATCGGGGGGA 145071
Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCG-TCGCCACCGTGTCGCTCGATTCCAC 46545
| | ||||||| | ||| || ||| | || || | | ||| ||||| | || ||
Sbjct 145070 ATTCCTTCCTTGT-CTTGAATTTTGGCTTTAACGTTCTCAATCGTATCGCTTGGCTCGAC 145012
Query 46546 ATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593
|| | ||||| ||||| || || |||||||||||||| || |||||
Sbjct 145011 TTCAAGAGTGATCGTTTTTCCGGTAAGCGTTTTAACAAAAATCTGCAT 144964
Score = 95.1 bits (104), Expect = 1e-14
Identities = 136/192 (71%), Gaps = 0/192 (0%)
Strand=Plus/Minus
Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461
||||||||||||||||||||| || ||||| || | || || || || || ||||| ||
Sbjct 144699 CTCCTTTTGGATATTGTAGTCTGAAAGAGTACGTCCATCTTCTAGTTGTTTACCGGCAAA 144640
Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521
|| | | |||||| || | || | | ||| ||||| ||| ||| ||| | |
Sbjct 144639 GATTAGCCTCTGCTGATCAGGGGGGATACCCTCTTTGTCTTGGATTTTCGCCTTAACATT 144580
Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581
| | | ||||| | ||| || |||| ||||||||||| || || || || || ||
Sbjct 144579 CTCAATTGTGTCAGAAGGTTCAACCTCCAGGGTGATGGTTTTCCCGGTGAGAGTCTTTAC 144520
Query 46582 AAAGATTTGCAT 46593
|||||| |||||
Sbjct 144519 AAAGATCTGCAT 144508
Score = 95.1 bits (104), Expect = 1e-14
Identities = 136/192 (71%), Gaps = 0/192 (0%)
Strand=Plus/Minus
Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461
||||||||| ||||||||||| || || ||||| | || || |||||||| ||||| ||
Sbjct 144927 CTCCTTTTGAATATTGTAGTCCGAAAGGGTGCGTCCATCTTCAAGCTGCTTTCCGGCAAA 144868
Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521
||||| | ||| || |||| || | | |||||||| ||||| ||| | |
Sbjct 144867 GATCAATCTCTGTTGATCGGGGGGAATTCCTTCCTTGTCTTGAATCTTGGCCTTTACGTT 144808
Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581
| | | || || | ||||| |||| |||||||| || || || || ||||| ||
Sbjct 144807 CTCAATTGTATCAGAAGGCTCCACTTCCAAGGTGATGGTCTTCCCAGTAAGGGTTTTGAC 144748
Query 46582 AAAGATTTGCAT 46593
|| ||||||||
Sbjct 144747 GAAAATTTGCAT 144736
>seq7231
Length=219762
Score = 118 bits (130), Expect = 1e-21
Identities = 145/197 (74%), Gaps = 6/197 (3%)
Strand=Plus/Plus
Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462
||||| || |||||||| ||||| || ||||| |||| || ||||||||||| |||||
Sbjct 93936 TCCTTCTGTATATTGTAATCGGAGAGTGTGCGACCGTCCTCTAGCTGCTTGCCAGCGAAA 93995
Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTC 46522
|||| |||||||| || | || | | || || ||| |||||| |||||| ||
Sbjct 93996 ATCAGACGCTGCTGATCTGGTGGAATACCTTCTTTATCCTGGATCTTTGTCTTGACGTTC 94055
Query 46523 GCCACCGTGTCGCTCGAT---TCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTA 46579
| | |||||| |||| || || || | ||||| ||||| || || | |||||
Sbjct 94056 TCGATCGTGTC---CGATCCCTCTACGTCTAGAGTGATAGTTTTCCCAGTTAATGTTTTC 94112
Query 46580 ACAAAGATTTGCATTTT 46596
|||||||||||||||||
Sbjct 94113 ACAAAGATTTGCATTTT 94129
Score = 109 bits (120), Expect = 6e-19
Identities = 153/215 (71%), Gaps = 0/215 (0%)
Strand=Plus/Plus
Query 46379 CGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCG 46438
||||| || ||||||| ||| ||||||||| ||||| || || || || || || ||
Sbjct 93684 CGCAAGACGAGATGCAGTGTCGACTCCTTTTGAATATTATAATCTGAGAGGGTACGGCCG 93743
Query 46439 TCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 46498
|| || || |||||||| || || |||| || ||||| || | || | || ||| ||
Sbjct 93744 TCTTCCAGTTGCTTGCCAGCAAAGATCAGACGTTGCTGATCCGGAGGGATGCCCTCTTTA 93803
Query 46499 TCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATG 46558
||| ||| || ||| | | | | || ||||| | ||| || || | ||||||
Sbjct 93804 TCCTGGATTTTTGCCTTCACATTTTCAATTGTATCGCTGGGTTCAACTTCAAGGGTGATG 93863
Query 46559 GTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593
||||| || || ||||| || |||||||| |||||
Sbjct 93864 GTTTTTCCAGTGAGCGTCTTCACAAAGATCTGCAT 93898
Score = 95.1 bits (104), Expect = 1e-14
Identities = 157/227 (69%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426
||||||| | ||| | || || || | ||| ||| || || || || ||||| |||
Sbjct 100208 CCTCCTCGAAGACGTAGTACGAGGTGTAGAGTAGACTCTTTCTGAATGTTATAGTCTGAT 100267
Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486
|| || || |||| || ||||||||||| || || || || | ||||| |||| |||
Sbjct 100268 AGCGTTCGGCCGTCTTCAAGCTGCTTGCCAGCAAAGATTAACCTTTGCTGATCGGGCGGA 100327
Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 46546
| | |||||||| ||||| ||| | | | | || ||||| | ||| ||
Sbjct 100328 ATACCTTCCTTGTCTTGAATCTTTGCCTTAACGTTTTCGATTGTATCGCTAGGTTCAACC 100387
Query 46547 TCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593
|| | ||||| || || || ||||||||||| || ||||| |||||
Sbjct 100388 TCTAGAGTGATCGTCTTTCCGGTCAGCGTTTTTACGAAGATCTGCAT 100434
Score = 93.3 bits (102), Expect = 5e-14
Identities = 135/191 (71%), Gaps = 0/191 (0%)
Strand=Plus/Plus
Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462
|| || ||||| |||||||| || || || | |||| |||||||| || || || ||
Sbjct 92608 TCTTTCTGGATGTTGTAGTCTGACAGTGTTCTACCGTCCTCGAGCTGTTTACCCGCAAAG 92667
Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTC 46522
||||| ||||||||||| | ||| | | ||||||||| || ||| ||| | ||
Sbjct 92668 ATCAATCGCTGCTGGTCAGGCGGGATACCTTCCTTGTCCTGAATTTTCGCCTTCACGTTC 92727
Query 46523 GCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACA 46582
| | || || | ||| || |||| || ||||| || ||||||| || || ||
Sbjct 92728 TCGATGGTATCTGAGGGTTCGACCTCCAAGGTAATGGTCTTCCCCGTCAAAGTCTTTACG 92787
Query 46583 AAGATTTGCAT 46593
|||||||||||
Sbjct 92788 AAGATTTGCAT 92798
Score = 82.4 bits (90), Expect = 9e-11
Identities = 134/193 (69%), Gaps = 0/193 (0%)
Strand=Plus/Plus
Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461
||| ||||||||||||||||| || ||||| || |||| || | ||| || || || ||
Sbjct 100699 CTCTTTTTGGATATTGTAGTCCGAAAGAGTACGTCCGTCTTCCAACTGTTTTCCAGCAAA 100758
Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521
|| || | ||| ||||| | || | | ||||||||| ||||| ||||| |
Sbjct 100759 GATTAATCTCTGTTGGTCTGGGGGAATACCCTCCTTGTCTTGAATCTTTGCCTTGACATT 100818
Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581
| | || || |||||||| || | ||||| || || || || || ||||| ||
Sbjct 100819 TTCGATTGTATCTGAAGATTCCACCTCAAGGGTGATAGTCTTACCGGTTAGGGTTTTCAC 100878
Query 46582 AAAGATTTGCATT 46594
|| || ||||||
Sbjct 100879 GAAAATCTGCATT 100891
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 565093925064960
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |