Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Varroa_20destructor_20[genbank_20GCA_5F000181155.2_202017-05-09] 20,448 sequences; 331,927,360 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq19980 120 3e-22 seq7231 118 1e-21 >seq19980 Length=299602 Score = 120 bits (132), Expect = 3e-22 Identities = 165/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 ||||||| | | || ||||||||| | ||| ||| ||||| || ||||||||||| Sbjct 145190 CCTCCTCGGAGTCTCAGCACCAGATGAAGGGTAGACTCTTTTTGAATGTTGTAGTCGGAG 145131 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 || ||||| | || |||||||| ||||| ||||| ||||| | || || |||| || Sbjct 145130 AGCGTGCGACCATCCTCGAGCTGTTTGCCTGCGAAAATCAACCTTTGTTGATCGGGGGGA 145071 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCG-TCGCCACCGTGTCGCTCGATTCCAC 46545 | | ||||||| | ||| || ||| | || || | | ||| ||||| | || || Sbjct 145070 ATTCCTTCCTTGT-CTTGAATTTTGGCTTTAACGTTCTCAATCGTATCGCTTGGCTCGAC 145012 Query 46546 ATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || | ||||| ||||| || || |||||||||||||| || ||||| Sbjct 145011 TTCAAGAGTGATCGTTTTTCCGGTAAGCGTTTTAACAAAAATCTGCAT 144964 Score = 95.1 bits (104), Expect = 1e-14 Identities = 136/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 ||||||||||||||||||||| || ||||| || | || || || || || ||||| || Sbjct 144699 CTCCTTTTGGATATTGTAGTCTGAAAGAGTACGTCCATCTTCTAGTTGTTTACCGGCAAA 144640 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 || | | |||||| || | || | | ||| ||||| ||| ||| ||| | | Sbjct 144639 GATTAGCCTCTGCTGATCAGGGGGGATACCCTCTTTGTCTTGGATTTTCGCCTTAACATT 144580 Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581 | | | ||||| | ||| || |||| ||||||||||| || || || || || || Sbjct 144579 CTCAATTGTGTCAGAAGGTTCAACCTCCAGGGTGATGGTTTTCCCGGTGAGAGTCTTTAC 144520 Query 46582 AAAGATTTGCAT 46593 |||||| ||||| Sbjct 144519 AAAGATCTGCAT 144508 Score = 95.1 bits (104), Expect = 1e-14 Identities = 136/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 ||||||||| ||||||||||| || || ||||| | || || |||||||| ||||| || Sbjct 144927 CTCCTTTTGAATATTGTAGTCCGAAAGGGTGCGTCCATCTTCAAGCTGCTTTCCGGCAAA 144868 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 ||||| | ||| || |||| || | | |||||||| ||||| ||| | | Sbjct 144867 GATCAATCTCTGTTGATCGGGGGGAATTCCTTCCTTGTCTTGAATCTTGGCCTTTACGTT 144808 Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581 | | | || || | ||||| |||| |||||||| || || || || ||||| || Sbjct 144807 CTCAATTGTATCAGAAGGCTCCACTTCCAAGGTGATGGTCTTCCCAGTAAGGGTTTTGAC 144748 Query 46582 AAAGATTTGCAT 46593 || |||||||| Sbjct 144747 GAAAATTTGCAT 144736 >seq7231 Length=219762 Score = 118 bits (130), Expect = 1e-21 Identities = 145/197 (74%), Gaps = 6/197 (3%) Strand=Plus/Plus Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462 ||||| || |||||||| ||||| || ||||| |||| || ||||||||||| ||||| Sbjct 93936 TCCTTCTGTATATTGTAATCGGAGAGTGTGCGACCGTCCTCTAGCTGCTTGCCAGCGAAA 93995 Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTC 46522 |||| |||||||| || | || | | || || ||| |||||| |||||| || Sbjct 93996 ATCAGACGCTGCTGATCTGGTGGAATACCTTCTTTATCCTGGATCTTTGTCTTGACGTTC 94055 Query 46523 GCCACCGTGTCGCTCGAT---TCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTA 46579 | | |||||| |||| || || || | ||||| ||||| || || | ||||| Sbjct 94056 TCGATCGTGTC---CGATCCCTCTACGTCTAGAGTGATAGTTTTCCCAGTTAATGTTTTC 94112 Query 46580 ACAAAGATTTGCATTTT 46596 ||||||||||||||||| Sbjct 94113 ACAAAGATTTGCATTTT 94129 Score = 109 bits (120), Expect = 6e-19 Identities = 153/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 46379 CGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCG 46438 ||||| || ||||||| ||| ||||||||| ||||| || || || || || || || Sbjct 93684 CGCAAGACGAGATGCAGTGTCGACTCCTTTTGAATATTATAATCTGAGAGGGTACGGCCG 93743 Query 46439 TCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 46498 || || || |||||||| || || |||| || ||||| || | || | || ||| || Sbjct 93744 TCTTCCAGTTGCTTGCCAGCAAAGATCAGACGTTGCTGATCCGGAGGGATGCCCTCTTTA 93803 Query 46499 TCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATG 46558 ||| ||| || ||| | | | | || ||||| | ||| || || | |||||| Sbjct 93804 TCCTGGATTTTTGCCTTCACATTTTCAATTGTATCGCTGGGTTCAACTTCAAGGGTGATG 93863 Query 46559 GTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 ||||| || || ||||| || |||||||| ||||| Sbjct 93864 GTTTTTCCAGTGAGCGTCTTCACAAAGATCTGCAT 93898 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 ||||||| | ||| | || || || | ||| ||| || || || || ||||| ||| Sbjct 100208 CCTCCTCGAAGACGTAGTACGAGGTGTAGAGTAGACTCTTTCTGAATGTTATAGTCTGAT 100267 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 || || || |||| || ||||||||||| || || || || | ||||| |||| ||| Sbjct 100268 AGCGTTCGGCCGTCTTCAAGCTGCTTGCCAGCAAAGATTAACCTTTGCTGATCGGGCGGA 100327 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 46546 | | |||||||| ||||| ||| | | | | || ||||| | ||| || Sbjct 100328 ATACCTTCCTTGTCTTGAATCTTTGCCTTAACGTTTTCGATTGTATCGCTAGGTTCAACC 100387 Query 46547 TCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || | ||||| || || || ||||||||||| || ||||| ||||| Sbjct 100388 TCTAGAGTGATCGTCTTTCCGGTCAGCGTTTTTACGAAGATCTGCAT 100434 Score = 93.3 bits (102), Expect = 5e-14 Identities = 135/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462 || || ||||| |||||||| || || || | |||| |||||||| || || || || Sbjct 92608 TCTTTCTGGATGTTGTAGTCTGACAGTGTTCTACCGTCCTCGAGCTGTTTACCCGCAAAG 92667 Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTC 46522 ||||| ||||||||||| | ||| | | ||||||||| || ||| ||| | || Sbjct 92668 ATCAATCGCTGCTGGTCAGGCGGGATACCTTCCTTGTCCTGAATTTTCGCCTTCACGTTC 92727 Query 46523 GCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACA 46582 | | || || | ||| || |||| || ||||| || ||||||| || || || Sbjct 92728 TCGATGGTATCTGAGGGTTCGACCTCCAAGGTAATGGTCTTCCCCGTCAAAGTCTTTACG 92787 Query 46583 AAGATTTGCAT 46593 ||||||||||| Sbjct 92788 AAGATTTGCAT 92798 Score = 82.4 bits (90), Expect = 9e-11 Identities = 134/193 (69%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 ||| ||||||||||||||||| || ||||| || |||| || | ||| || || || || Sbjct 100699 CTCTTTTTGGATATTGTAGTCCGAAAGAGTACGTCCGTCTTCCAACTGTTTTCCAGCAAA 100758 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 || || | ||| ||||| | || | | ||||||||| ||||| ||||| | Sbjct 100759 GATTAATCTCTGTTGGTCTGGGGGAATACCCTCCTTGTCTTGAATCTTTGCCTTGACATT 100818 Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581 | | || || |||||||| || | ||||| || || || || || ||||| || Sbjct 100819 TTCGATTGTATCTGAAGATTCCACCTCAAGGGTGATAGTCTTACCGGTTAGGGTTTTCAC 100878 Query 46582 AAAGATTTGCATT 46594 || || |||||| Sbjct 100879 GAAAATCTGCATT 100891 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565093925064960