Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Varroa_20destructor_20[genbank_20GCA_5F000181155.2_202017-05-09]
20,448 sequences; 331,927,360 total letters
Query= NC_013797.1
Length=108592
Score E
Sequences producing significant alignments: (Bits) Value
seq19980 91.5 1e-13
seq7231 84.2 2e-11
>seq19980
Length=299602
Score = 91.5 bits (100), Expect = 1e-13
Identities = 149/215 (69%), Gaps = 0/215 (0%)
Strand=Plus/Minus
Query 39505 CGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCCAAAACGCGTTCA 39564
|| ||||| | ||| | |||| || ||||| ||||| || || | | | ||| ||
Sbjct 144722 CGAAGTACAAGATGAAGAGTGGACTCCTTTTGGATATTGTAGTCTGAAAGAGTACGTCCA 144663
Query 39565 TCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTG 39624
|| || | |||||| ||| |||| |||| | ||||||||| | ||| | || ||||||
Sbjct 144662 TCTTCTAGTTGTTTACCGGCAAAGATTAGCCTCTGCTGATCAGGGGGGATACCCTCTTTG 144603
Query 39625 TCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATT 39684
|| ||||| |||| || | | |||||| | ||| || |||| || ||
Sbjct 144602 TCTTGGATTTTCGCCTTAACATTCTCAATTGTGTCAGAAGGTTCAACCTCCAGGGTGATG 144543
Query 39685 GTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719
||||| || || | ||| ||||| |||||||||||
Sbjct 144542 GTTTTCCCGGTGAGAGTCTTTACAAAGATCTGCAT 144508
>seq7231
Length=219762
Score = 84.2 bits (92), Expect = 2e-11
Identities = 153/224 (68%), Gaps = 0/224 (0%)
Strand=Plus/Plus
Query 39496 CCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCCAAA 39555
||||||| || || || | ||| | ||||||||| || || || ||||||||| |
Sbjct 93219 CCTCGCAGGCGAAGCACAAGATGGAGAGTGCTTTCCTTCTGAATGTTATAATCGTTAAGG 93278
Query 39556 ACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGTACG 39615
||| |||| ||||| ||||| || ||||||| ||||| ||||| || | || | |
Sbjct 93279 GTGCGGCCATCCTCCAACTGTTTTCCAGCAAAAATCAAACGTTGCTGGTCAGGAGGAATG 93338
Query 39616 CCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACGTCC 39675
|| |||||||| || ||| ||| | | | | |||||| | || || ||
Sbjct 93339 CCCTCTTTGTCCTGGATCTTTGCTTTGACATTTTCAATTGTGTCGGATGGCTCGACTTCA 93398
Query 39676 AAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719
| || || || || || || | ||| || || |||||||||||
Sbjct 93399 AGCGTGATCGTCTTGCCGGTGAGAGTCTTGACAAAGATCTGCAT 93442
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 347283032021984
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |