Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Varroa_20destructor_20[genbank_20GCA_5F000181155.2_202017-05-09] 20,448 sequences; 331,927,360 total letters Query= NC_013797.1 Length=108592 Score E Sequences producing significant alignments: (Bits) Value seq19980 91.5 1e-13 seq7231 84.2 2e-11 >seq19980 Length=299602 Score = 91.5 bits (100), Expect = 1e-13 Identities = 149/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 39505 CGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCCAAAACGCGTTCA 39564 || ||||| | ||| | |||| || ||||| ||||| || || | | | ||| || Sbjct 144722 CGAAGTACAAGATGAAGAGTGGACTCCTTTTGGATATTGTAGTCTGAAAGAGTACGTCCA 144663 Query 39565 TCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTG 39624 || || | |||||| ||| |||| |||| | ||||||||| | ||| | || |||||| Sbjct 144662 TCTTCTAGTTGTTTACCGGCAAAGATTAGCCTCTGCTGATCAGGGGGGATACCCTCTTTG 144603 Query 39625 TCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATT 39684 || ||||| |||| || | | |||||| | ||| || |||| || || Sbjct 144602 TCTTGGATTTTCGCCTTAACATTCTCAATTGTGTCAGAAGGTTCAACCTCCAGGGTGATG 144543 Query 39685 GTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 ||||| || || | ||| ||||| ||||||||||| Sbjct 144542 GTTTTCCCGGTGAGAGTCTTTACAAAGATCTGCAT 144508 >seq7231 Length=219762 Score = 84.2 bits (92), Expect = 2e-11 Identities = 153/224 (68%), Gaps = 0/224 (0%) Strand=Plus/Plus Query 39496 CCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCCAAA 39555 ||||||| || || || | ||| | ||||||||| || || || ||||||||| | Sbjct 93219 CCTCGCAGGCGAAGCACAAGATGGAGAGTGCTTTCCTTCTGAATGTTATAATCGTTAAGG 93278 Query 39556 ACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGTACG 39615 ||| |||| ||||| ||||| || ||||||| ||||| ||||| || | || | | Sbjct 93279 GTGCGGCCATCCTCCAACTGTTTTCCAGCAAAAATCAAACGTTGCTGGTCAGGAGGAATG 93338 Query 39616 CCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACGTCC 39675 || |||||||| || ||| ||| | | | | |||||| | || || || Sbjct 93339 CCCTCTTTGTCCTGGATCTTTGCTTTGACATTTTCAATTGTGTCGGATGGCTCGACTTCA 93398 Query 39676 AAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 | || || || || || || | ||| || || ||||||||||| Sbjct 93399 AGCGTGATCGTCTTGCCGGTGAGAGTCTTGACAAAGATCTGCAT 93442 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 347283032021984