Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Varroa_20destructor_20[genbank_20GCA_5F000181155.2_202017-05-09]
20,448 sequences; 331,927,360 total letters
Query= NC_013953.1
Length=156344
Score E
Sequences producing significant alignments: (Bits) Value
seq19980 140 3e-28
seq19464 132 5e-26
seq7231 131 2e-25
>seq19980
Length=299602
Score = 140 bits (154), Expect = 3e-28
Identities = 161/214 (75%), Gaps = 2/214 (1%)
Strand=Plus/Plus
Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303
||||| || || || |||||||| || || ||||| ||||| | || |||||| | | |
Sbjct 144964 ATGCAGATTTTTGTTAAAACGCTTACCGGAAAAACGATCACTCTTGAAGTCGAGCCAAGC 145023
Query 38304 GACA-GCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362
|| | | || |||| |||||| ||||| | ||||| || ||||||||| |||| ||
Sbjct 145024 GATACGATTGAGAACG-TTAAAGCCAAAATTCAAGACAAGGAAGGAATTCCCCCCGATCA 145082
Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422
||| || | |||| ||| ||||||||||| || || | ||||| ||| |||||||||
Sbjct 145083 ACAAAGGTTGATTTTCGCAGGCAAACAGCTCGAGGATGGTCGCACGCTCTCCGACTACAA 145142
Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTG 38456
||| ||||| || | || || ||| ||||||||
Sbjct 145143 CATTCAAAAAGAGTCTACCCTTCATCTGGTGCTG 145176
Score = 95.1 bits (104), Expect = 1e-14
Identities = 150/215 (70%), Gaps = 0/215 (0%)
Strand=Plus/Plus
Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303
||||| || || ||||| || ||||| || |||||||||||| | || || || | |
Sbjct 144508 ATGCAGATCTTTGTAAAGACTCTCACCGGGAAAACCATCACCCTGGAGGTTGAACCTTCT 144567
Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363
|||| | | | |||| | ||||||| ||||||||||| || ||| | || ||
Sbjct 144568 GACACAATTGAGAATGTTAAGGCGAAAATCCAAGACAAAGAGGGTATCCCCCCTGATCAG 144627
Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423
||| |||| || | || || ||||| || || || | || || || ||||||||
Sbjct 144628 CAGAGGCTAATCTTTGCCGGTAAACAACTAGAAGATGGACGTACTCTTTCAGACTACAAT 144687
Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458
||||||||||| | || || ||| | || || ||
Sbjct 144688 ATCCAAAAGGAGTCCACTCTTCATCTTGTACTTCG 144722
Score = 89.7 bits (98), Expect = 5e-13
Identities = 157/229 (69%), Gaps = 0/229 (0%)
Strand=Plus/Plus
Query 38242 AAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCA 38301
|||||||||| || || ||||| | || || || || |||||| | || || ||| |
Sbjct 144278 AAATGCAAATTTTTGTGAAAACTTTAACCGGAAAGACTATCACCCTTGAGGTGGAGTCTT 144337
Query 38302 CCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACC 38361
| || | | ||| | || | || || | || || ||||| |||||| | ||||
Sbjct 144338 CTGATACAATCGAAAATGTCAAGGCGAAGATTCAAGATAAGGAGGGGATTCCCCCAGACC 144397
Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421
| ||| || | || | || || |||||| |||| |||| || || || || ||||
Sbjct 144398 AGCAGAGGTTAATCTTTGCTGGTAAACAGTTGGAAGACGGACGTACTCTTTCTGATTACA 144457
Query 38422 ACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470
||||||| || ||| |||| || ||| | || ||||| || |||| ||
Sbjct 144458 ACATCCAGAAAGAATCGACCCTTCATCTTGTCTTGCGTCTGCGAGGTGG 144506
>seq19464
Length=44290
Score = 132 bits (146), Expect = 5e-26
Identities = 173/239 (72%), Gaps = 3/239 (1%)
Strand=Plus/Plus
Query 133275 CTCGACCAGATTTTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTT 133334
||| || ||||| ||||| || ||||| || || || ||||| || || | ||| ||
Sbjct 13043 CTCAACAAGATTCTCGTTCACAATGCCATCAGAAGCAGCAAAAAACGCAAGAATGTGTTT 13102
Query 133335 GATGAAATGGCGCTCGTTGTCGTTCAAGCG---CTCCCAGTCGCGCGTGTCCTTGGACAG 133391
|||||| | ||||| | |||| || || |||||| | |||||||| ||
Sbjct 13103 GATGAATTCTCGCTCCTGAGGTTTCATTCGGTTCTTCCAGTCAGACATGTCCTTGCCCAA 13162
Query 133392 GTCCACCTCCTCGACGGTCCAAAACGACGCCTCGGCTTTTTTGTACATACTCCACATGTC 133451
|| |||||||| |||||||||| || |||| || ||||||||||| ||| |||||
Sbjct 13163 ATCGACCTCCTCAGCGGTCCAAAAAGAGGCCTGTGCCTTTTTGTACATTTGCCAAATGTC 13222
Query 133452 CGAATATTGTATGGGAAAAATCACAAACCGGCGGGGGTTTTCGCGCAACAGCGGCTCCG 133510
||||||| |||||||||| |||||| || |||||| || || | || ||| ||||
Sbjct 13223 GGAATATTCAATGGGAAAAAGCACAAAACGATTGGGGTTCTCCCGGAGCAACGGTTCCG 13281
>seq7231
Length=219762
Score = 131 bits (144), Expect = 2e-25
Identities = 160/216 (74%), Gaps = 2/216 (1%)
Strand=Plus/Minus
Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303
||||| || ||||| || || |||||||| || || ||||| | || || || ||| |
Sbjct 93670 ATGCAGATCTTCGTCAAGACCCTCACGGGGAAGACTATCACACTTGAGGTTGAACCCAGC 93611
Query 38304 GACAGCGT-GCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362
|| | | | ||||| | || | ||||||| ||||| ||||| ||||| | |||||
Sbjct 93610 GATACAATTGAAAACG-TGAAGGCCAAAATCCAGGACAAGGAGGGTATTCCTCCTGACCA 93552
Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422
|| || ||||||| ||| || ||||| || || || | ||||| |||| ||||||||
Sbjct 93551 GCAACGTCTCATTTTCGCCGGAAAACAACTCGAGGATGGTCGCACACTCAGTGACTACAA 93492
Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458
||| ||||||||| ||||| || |||||||| ||
Sbjct 93491 CATTCAAAAGGAAAGCACGCTTCACTTGGTGCTTCG 93456
Score = 127 bits (140), Expect = 2e-24
Identities = 167/229 (73%), Gaps = 2/229 (1%)
Strand=Plus/Minus
Query 38243 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCAC 38302
|||||| || || || ||||| || ||||| ||||| || || | || || ||| | |
Sbjct 93027 AATGCAGATTTTTGTGAAAACCCTTACGGGAAAAACAATAACACTTGAAGTTGAGCCAAG 92968
Query 38303 CGACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACC 38361
||||| | | | |||| | |||| ||||| | ||||||||||| ||||| | ||||
Sbjct 92967 CGACACCATTGAGAACG-TAAAAGCGAAAATTCAAGACAAAGAGGGCATTCCGCCTGACC 92909
Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421
||||||| ||||| | || || ||||| || || |||| ||||| || |||||||
Sbjct 92908 AACAGCGTCTCATCTTTGCTGGAAAACAACTCGAGGACGGTCGCACGCTATCGGACTACA 92849
Query 38422 ACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470
||||||| |||||| || ||||| | ||||| ||| | | |||||
Sbjct 92848 ACATCCAGAAGGAAAGCACCTTGCATCTCGTGCTCCGTCTCCGTGGCGG 92800
Score = 122 bits (134), Expect = 9e-23
Identities = 162/225 (72%), Gaps = 0/225 (0%)
Strand=Plus/Minus
Query 38243 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCAC 38302
|||||| || || || || || ||||| ||||| || ||||| | || |||||| | |
Sbjct 93443 AATGCAGATCTTTGTCAAGACTCTCACCGGCAAGACGATCACGCTTGAAGTCGAGCCATC 93384
Query 38303 CGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362
||||| | ||| | |||| ||| |||| ||||||||||| ||||| | |||||
Sbjct 93383 CGACACAATTGAAAATGTCAAAGCAAAGATCCAGGACAAAGAGGGCATTCCTCCTGACCA 93324
Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422
|| || | |||| || || |||||| |||| || | |||||||| ||||| || ||
Sbjct 93323 GCAACGTTTGATTTTTGCTGGAAAACAGTTGGAGGATGGCCGCACCCTTAACGATTATAA 93264
Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGG 38467
||| || |||||| || || ||| | ||||| || || ||||
Sbjct 93263 CATTCAGAAGGAAAGCACTCTCCATCTTGTGCTTCGCCTGCGAGG 93219
Score = 109 bits (120), Expect = 5e-19
Identities = 156/217 (72%), Gaps = 2/217 (1%)
Strand=Plus/Minus
Query 38243 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCAC 38302
||||||||| ||||| || ||| | || || |||||||| ||| | || || ||| || |
Sbjct 92384 AATGCAAATTTTCGTTAAGACGTTGACCGGAAAAACCATAACCCTTGAGGTTGAGCCCTC 92325
Query 38303 CGACAGCGT-GCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACC 38361
|| | | | | ||||| | || | |||||| | || || || || || ||| | || |
Sbjct 92324 GGATACCATCGAAAACG-TAAAGGCAAAAATTCAGGATAAGGAAGGCATCCCCCCTGATC 92266
Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421
| ||||| || || | ||| || ||||| || || || | || ||||| ||| ||||
Sbjct 92265 AGCAGCGTCTTATATTCGCTGGAAAACAACTCGAGGATGGACGTACCCTGTCCGATTACA 92206
Query 38422 ACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458
| || || || ||| | || ||||| |||||||||||
Sbjct 92205 ATATTCAGAAAGAATCAACTCTGCACTTGGTGCTGCG 92169
Score = 104 bits (114), Expect = 2e-17
Identities = 152/215 (71%), Gaps = 0/215 (0%)
Strand=Plus/Minus
Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303
||||| || || || || |||||||| || |||||||||||| | || || || ||| |
Sbjct 93898 ATGCAGATCTTTGTGAAGACGCTCACTGGAAAAACCATCACCCTTGAAGTTGAACCCAGC 93839
Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363
|| | | ||| | || | |||||||| || |||||||| || || | || ||
Sbjct 93838 GATACAATTGAAAATGTGAAGGCAAAAATCCAGGATAAAGAGGGCATCCCTCCGGATCAG 93779
Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423
|| || || || | || ||||| || ||||| |||| || |||||| || || ||
Sbjct 93778 CAACGTCTGATCTTTGCTGGCAAGCAACTGGAAGACGGCCGTACCCTCTCAGATTATAAT 93719
Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458
|| |||||||| |||| |||||| | || ||||
Sbjct 93718 ATTCAAAAGGAGTCGACACTGCATCTCGTCTTGCG 93684
Score = 98.7 bits (108), Expect = 1e-15
Identities = 163/228 (71%), Gaps = 8/228 (4%)
Strand=Plus/Minus
Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303
|||||||| |||||||| || | ||||| || ||||| ||| | || ||||| || |
Sbjct 92798 ATGCAAATCTTCGTAAAGACTTTGACGGGGAAGACCATTACCTTGGAGGTCGAACCCTCA 92739
Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCC-GACC 38361
|| | | | | |||| | || | ||||| | ||||| || || || |||||| ||||
Sbjct 92738 GATACCATCGAGAACG-TGAAGGCGAAAATTCAGGACAAGGAAGGTAT-CCCGCCTGACC 92681
Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACG--AGCGCACCCTCAACGACTA 38419
| ||||| | || | ||||| |||||||| || |||| || ||| ||| |||||
Sbjct 92680 AGCAGCGATTGATCTTTGCGGGTAAACAGCTCGAGGACGGTAGAACACTGTCA--GACTA 92623
Query 38420 CAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGG 38467
||||||||| || ||| | ||||| || | || || ||| | ||||
Sbjct 92622 CAACATCCAGAAAGAATCAACGCTCCACCTCGTTCTTCGTCTCCGAGG 92575
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 500044955832320
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |