Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Varroa_20destructor_20[genbank_20GCA_5F000181155.2_202017-05-09] 20,448 sequences; 331,927,360 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq19980 140 3e-28 seq19464 132 5e-26 seq7231 131 2e-25 >seq19980 Length=299602 Score = 140 bits (154), Expect = 3e-28 Identities = 161/214 (75%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || |||||||| || || ||||| ||||| | || |||||| | | | Sbjct 144964 ATGCAGATTTTTGTTAAAACGCTTACCGGAAAAACGATCACTCTTGAAGTCGAGCCAAGC 145023 Query 38304 GACA-GCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 || | | || |||| |||||| ||||| | ||||| || ||||||||| |||| || Sbjct 145024 GATACGATTGAGAACG-TTAAAGCCAAAATTCAAGACAAGGAAGGAATTCCCCCCGATCA 145082 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| || | |||| ||| ||||||||||| || || | ||||| ||| ||||||||| Sbjct 145083 ACAAAGGTTGATTTTCGCAGGCAAACAGCTCGAGGATGGTCGCACGCTCTCCGACTACAA 145142 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTG 38456 ||| ||||| || | || || ||| |||||||| Sbjct 145143 CATTCAAAAAGAGTCTACCCTTCATCTGGTGCTG 145176 Score = 95.1 bits (104), Expect = 1e-14 Identities = 150/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || ||||| || ||||| || |||||||||||| | || || || | | Sbjct 144508 ATGCAGATCTTTGTAAAGACTCTCACCGGGAAAACCATCACCCTGGAGGTTGAACCTTCT 144567 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | |||| | ||||||| ||||||||||| || ||| | || || Sbjct 144568 GACACAATTGAGAATGTTAAGGCGAAAATCCAAGACAAAGAGGGTATCCCCCCTGATCAG 144627 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||| |||| || | || || ||||| || || || | || || || |||||||| Sbjct 144628 CAGAGGCTAATCTTTGCCGGTAAACAACTAGAAGATGGACGTACTCTTTCAGACTACAAT 144687 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 ||||||||||| | || || ||| | || || || Sbjct 144688 ATCCAAAAGGAGTCCACTCTTCATCTTGTACTTCG 144722 Score = 89.7 bits (98), Expect = 5e-13 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 38242 AAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCA 38301 |||||||||| || || ||||| | || || || || |||||| | || || ||| | Sbjct 144278 AAATGCAAATTTTTGTGAAAACTTTAACCGGAAAGACTATCACCCTTGAGGTGGAGTCTT 144337 Query 38302 CCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACC 38361 | || | | ||| | || | || || | || || ||||| |||||| | |||| Sbjct 144338 CTGATACAATCGAAAATGTCAAGGCGAAGATTCAAGATAAGGAGGGGATTCCCCCAGACC 144397 Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421 | ||| || | || | || || |||||| |||| |||| || || || || |||| Sbjct 144398 AGCAGAGGTTAATCTTTGCTGGTAAACAGTTGGAAGACGGACGTACTCTTTCTGATTACA 144457 Query 38422 ACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||||||| || ||| |||| || ||| | || ||||| || |||| || Sbjct 144458 ACATCCAGAAAGAATCGACCCTTCATCTTGTCTTGCGTCTGCGAGGTGG 144506 >seq19464 Length=44290 Score = 132 bits (146), Expect = 5e-26 Identities = 173/239 (72%), Gaps = 3/239 (1%) Strand=Plus/Plus Query 133275 CTCGACCAGATTTTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTT 133334 ||| || ||||| ||||| || ||||| || || || ||||| || || | ||| || Sbjct 13043 CTCAACAAGATTCTCGTTCACAATGCCATCAGAAGCAGCAAAAAACGCAAGAATGTGTTT 13102 Query 133335 GATGAAATGGCGCTCGTTGTCGTTCAAGCG---CTCCCAGTCGCGCGTGTCCTTGGACAG 133391 |||||| | ||||| | |||| || || |||||| | |||||||| || Sbjct 13103 GATGAATTCTCGCTCCTGAGGTTTCATTCGGTTCTTCCAGTCAGACATGTCCTTGCCCAA 13162 Query 133392 GTCCACCTCCTCGACGGTCCAAAACGACGCCTCGGCTTTTTTGTACATACTCCACATGTC 133451 || |||||||| |||||||||| || |||| || ||||||||||| ||| ||||| Sbjct 13163 ATCGACCTCCTCAGCGGTCCAAAAAGAGGCCTGTGCCTTTTTGTACATTTGCCAAATGTC 13222 Query 133452 CGAATATTGTATGGGAAAAATCACAAACCGGCGGGGGTTTTCGCGCAACAGCGGCTCCG 133510 ||||||| |||||||||| |||||| || |||||| || || | || ||| |||| Sbjct 13223 GGAATATTCAATGGGAAAAAGCACAAAACGATTGGGGTTCTCCCGGAGCAACGGTTCCG 13281 >seq7231 Length=219762 Score = 131 bits (144), Expect = 2e-25 Identities = 160/216 (74%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || |||||||| || || ||||| | || || || ||| | Sbjct 93670 ATGCAGATCTTCGTCAAGACCCTCACGGGGAAGACTATCACACTTGAGGTTGAACCCAGC 93611 Query 38304 GACAGCGT-GCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 || | | | ||||| | || | ||||||| ||||| ||||| ||||| | ||||| Sbjct 93610 GATACAATTGAAAACG-TGAAGGCCAAAATCCAGGACAAGGAGGGTATTCCTCCTGACCA 93552 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 || || ||||||| ||| || ||||| || || || | ||||| |||| |||||||| Sbjct 93551 GCAACGTCTCATTTTCGCCGGAAAACAACTCGAGGATGGTCGCACACTCAGTGACTACAA 93492 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 ||| ||||||||| ||||| || |||||||| || Sbjct 93491 CATTCAAAAGGAAAGCACGCTTCACTTGGTGCTTCG 93456 Score = 127 bits (140), Expect = 2e-24 Identities = 167/229 (73%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 38243 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCAC 38302 |||||| || || || ||||| || ||||| ||||| || || | || || ||| | | Sbjct 93027 AATGCAGATTTTTGTGAAAACCCTTACGGGAAAAACAATAACACTTGAAGTTGAGCCAAG 92968 Query 38303 CGACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACC 38361 ||||| | | | |||| | |||| ||||| | ||||||||||| ||||| | |||| Sbjct 92967 CGACACCATTGAGAACG-TAAAAGCGAAAATTCAAGACAAAGAGGGCATTCCGCCTGACC 92909 Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421 ||||||| ||||| | || || ||||| || || |||| ||||| || ||||||| Sbjct 92908 AACAGCGTCTCATCTTTGCTGGAAAACAACTCGAGGACGGTCGCACGCTATCGGACTACA 92849 Query 38422 ACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||||||| |||||| || ||||| | ||||| ||| | | ||||| Sbjct 92848 ACATCCAGAAGGAAAGCACCTTGCATCTCGTGCTCCGTCTCCGTGGCGG 92800 Score = 122 bits (134), Expect = 9e-23 Identities = 162/225 (72%), Gaps = 0/225 (0%) Strand=Plus/Minus Query 38243 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCAC 38302 |||||| || || || || || ||||| ||||| || ||||| | || |||||| | | Sbjct 93443 AATGCAGATCTTTGTCAAGACTCTCACCGGCAAGACGATCACGCTTGAAGTCGAGCCATC 93384 Query 38303 CGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 ||||| | ||| | |||| ||| |||| ||||||||||| ||||| | ||||| Sbjct 93383 CGACACAATTGAAAATGTCAAAGCAAAGATCCAGGACAAAGAGGGCATTCCTCCTGACCA 93324 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 || || | |||| || || |||||| |||| || | |||||||| ||||| || || Sbjct 93323 GCAACGTTTGATTTTTGCTGGAAAACAGTTGGAGGATGGCCGCACCCTTAACGATTATAA 93264 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGG 38467 ||| || |||||| || || ||| | ||||| || || |||| Sbjct 93263 CATTCAGAAGGAAAGCACTCTCCATCTTGTGCTTCGCCTGCGAGG 93219 Score = 109 bits (120), Expect = 5e-19 Identities = 156/217 (72%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 38243 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCAC 38302 ||||||||| ||||| || ||| | || || |||||||| ||| | || || ||| || | Sbjct 92384 AATGCAAATTTTCGTTAAGACGTTGACCGGAAAAACCATAACCCTTGAGGTTGAGCCCTC 92325 Query 38303 CGACAGCGT-GCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACC 38361 || | | | | ||||| | || | |||||| | || || || || || ||| | || | Sbjct 92324 GGATACCATCGAAAACG-TAAAGGCAAAAATTCAGGATAAGGAAGGCATCCCCCCTGATC 92266 Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421 | ||||| || || | ||| || ||||| || || || | || ||||| ||| |||| Sbjct 92265 AGCAGCGTCTTATATTCGCTGGAAAACAACTCGAGGATGGACGTACCCTGTCCGATTACA 92206 Query 38422 ACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 | || || || ||| | || ||||| ||||||||||| Sbjct 92205 ATATTCAGAAAGAATCAACTCTGCACTTGGTGCTGCG 92169 Score = 104 bits (114), Expect = 2e-17 Identities = 152/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || |||||||| || |||||||||||| | || || || ||| | Sbjct 93898 ATGCAGATCTTTGTGAAGACGCTCACTGGAAAAACCATCACCCTTGAAGTTGAACCCAGC 93839 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 || | | ||| | || | |||||||| || |||||||| || || | || || Sbjct 93838 GATACAATTGAAAATGTGAAGGCAAAAATCCAGGATAAAGAGGGCATCCCTCCGGATCAG 93779 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 || || || || | || ||||| || ||||| |||| || |||||| || || || Sbjct 93778 CAACGTCTGATCTTTGCTGGCAAGCAACTGGAAGACGGCCGTACCCTCTCAGATTATAAT 93719 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 || |||||||| |||| |||||| | || |||| Sbjct 93718 ATTCAAAAGGAGTCGACACTGCATCTCGTCTTGCG 93684 Score = 98.7 bits (108), Expect = 1e-15 Identities = 163/228 (71%), Gaps = 8/228 (4%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| |||||||| || | ||||| || ||||| ||| | || ||||| || | Sbjct 92798 ATGCAAATCTTCGTAAAGACTTTGACGGGGAAGACCATTACCTTGGAGGTCGAACCCTCA 92739 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCC-GACC 38361 || | | | | |||| | || | ||||| | ||||| || || || |||||| |||| Sbjct 92738 GATACCATCGAGAACG-TGAAGGCGAAAATTCAGGACAAGGAAGGTAT-CCCGCCTGACC 92681 Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACG--AGCGCACCCTCAACGACTA 38419 | ||||| | || | ||||| |||||||| || |||| || ||| ||| ||||| Sbjct 92680 AGCAGCGATTGATCTTTGCGGGTAAACAGCTCGAGGACGGTAGAACACTGTCA--GACTA 92623 Query 38420 CAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGG 38467 ||||||||| || ||| | ||||| || | || || ||| | |||| Sbjct 92622 CAACATCCAGAAAGAATCAACGCTCCACCTCGTTCTTCGTCTCCGAGG 92575 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500044955832320