Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Varroa_20destructor_20[genbank_20GCA_5F000181155.2_202017-05-09] 20,448 sequences; 331,927,360 total letters Query= NC_014461.1 Length=73453 Score E Sequences producing significant alignments: (Bits) Value seq19061 95.1 6e-15 >seq19061 Length=15585 Score = 95.1 bits (104), Expect = 6e-15 Identities = 194/286 (68%), Gaps = 8/286 (3%) Strand=Plus/Minus Query 52785 GGTTGGCAATCTCACCGCCGATCCGGAACTGAGGTTCCTGCCTTCTGGTGTTGCCGTTGC 52844 ||| ||||| | || |||||||| || ||| ||||| || | || | ||||| || Sbjct 14189 GGTCGGCAACTTGACGGCCGATCCCGAGCTGCGGTTCACACCGACCGGCGCGGCCGTCGC 14130 Query 52845 CCAGTTCTCCGTGGCTTCTACGCCGCG--CGTTAAGA-----AGGGCGACGAGTGGGTCG 52897 | ||| |||| || || ||||| || | || || || | |||||||| | Sbjct 14129 GAACTTCACCGTCGCGTCGACGCCTCGGACCTTC-GACCGTCAGACCAACGAGTGGAAGG 14071 Query 52898 ATGGGGAGACGGTGTTTCTCCGTTGCACCGTGTGGCGTGAGCTGGCTGAGGGTGCCGCAG 52957 | || || || |||| | || |||| | | ||||| ||| || ||| | || | Sbjct 14070 ACGGCGAAGCGCTGTTCTTGCGCTGCAACATCTGGCGCGAGGCCGCGGAGAACGTGGCCG 14011 Query 52958 AGACCCTGCGGAAGGGCGATCAGGTCGTTGTGCTCGGCAAGCTGAAGCAGCGTTCGTTCG 53017 || | ||| | ||||| | ||| | ||| ||||| ||| |||||||| |||| || Sbjct 14010 AGTCGCTGACCAGGGGCGCGCGCGTCATCGTGACCGGCAGGCTCAAGCAGCGCTCGTACG 13951 Query 53018 AGACCAAAGAGGGCGAGAAGCGGACGGTGTTCGAGGTCGACGGCGA 53063 ||||| ||||||||||||||||| || ||||| |||| | ||| Sbjct 13950 AGACCCGCGAGGGCGAGAAGCGGACCGTCGTCGAGCTCGAAGTCGA 13905 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 234866254390592