Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Varroa_20destructor_20[genbank_20GCA_5F000181155.2_202017-05-09] 20,448 sequences; 331,927,360 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq19295 105 8e-18 seq2549 86.0 7e-12 >seq19295 Length=205138 Score = 105 bits (116), Expect = 8e-18 Identities = 283/425 (67%), Gaps = 12/425 (3%) Strand=Plus/Plus Query 167359 CCCGTACCAATACCTTCAGTACCGTTTACCAAAACCATCGGTAGAGTTGGCATGTAAAAG 167418 ||||| || |||||||||| |||||| || || | ||| || | | | |||| || ||| Sbjct 36567 CCCGTGCCGATACCTTCAGCACCGTTAACTAAGATCATTGGAATAATAGGCAGATAGAAG 36626 Query 167419 TCGGGTTCAATGGAACGACCATCATCATCCAAGTAGTTGAGAATGGCATCATCTTTGGGA 167478 ||||||||||| | ||||||| | |||||||| | || |||||| | | Sbjct 36627 TCGGGTTCAATCTTCTGGTTATCATCAAAGAGATAGTTGAGCACGGGATCATCCGAAGTA 36686 Query 167479 TCGAAGAGCTTTCGAGCCTCCTTGGTAAGCTTCGTAAAGATGTACCTCGTCTGAGACGC- 167537 || || |||| ||| | | || || || || |||||||| | | ||||| Sbjct 36687 GGAAATAGACTTCGTGCCAATGGGCTGAGTTTTGTGAAAATGTACCTGG---GTGACGCA 36743 Query 167538 --ATCCTTGCCACCCATGAGGCGTGTACCAAATTGACCACATGGCTCGAGAAGATTGATG 167595 ||| ||||||||| || || ||||| |||||||| |||| || || |||||| Sbjct 36744 GAATCTTTGCCACCCTGCAGCCGAGTACCGAATTGACCGATGGGCTGCAGTAGGTTGATG 36803 Query 167596 TTATTCGACCCCGTATAATCGTTGGCCAACTTGACGATCGT-TTCAGCGAGGGAAACTTC 167654 ||||| ||| ||| | |||||| |||||||| || ||| || || ||| Sbjct 36804 TTATTACTGCCCACGAAATTTTGGGCCAAGTTGACGATTGTCATCA-TTAGCGACTGTTC 36862 Query 167655 GCCGTGGTGGTAAGCACTCTTTTCAGCCACATATGCTGCCAACTGTGCAACCTT--CATC 167712 |||||||| || || | |||| || || || | || | ||| ||||| || | || Sbjct 36863 ACCGTGGTGATACGCCGACATTTCTGCTACGGATCCAGCAAGCTGGGCAACTTTGACTTC 36922 Query 167713 TCATCTTTGAGATTCTTTTGGAAACATGAATACATAACCTTGCGTTGAGAAGGTTTGAGA 167772 || ||| | ||| | | ||| || | ||| ||||| || || ||||| ||| Sbjct 36923 TC-GCTTATCG-TTCCTCTTGAAGCAGGTGAACAATACCTTACGCTGTCCTGGTTTAAGA 36980 Query 167773 CCATC 167777 ||||| Sbjct 36981 CCATC 36985 >seq2549 Length=104673 Score = 86.0 bits (94), Expect = 7e-12 Identities = 203/304 (67%), Gaps = 2/304 (1%) Strand=Plus/Minus Query 11667 ACGCTTCTTACCGACAGCGTCAATCTCATCGATGAATACGATACACGGTTGGTTGGCACG 11726 |||||| ||| || |||||||| ||||| ||||| | || || || ||| || Sbjct 54885 ACGCTTTCGACCAACGGCGTCAATTTCATCAATGAACAATATGCATGGGGCGTTTTTCCG 54826 Query 11727 TGCCTGTTCGAAAAGTTCACGTACACGCTTCGCTCCAACACCTACGAACATCTCAACGAA 11786 |||| | || | ||||| || || | ||||| || |||||||| |||| || Sbjct 54825 TGCCATGGCAAACATGTCACGAACTCGAGATGGGCCAACGCCGACGAACATTTCAAGAAA 54766 Query 11787 GTTTGCGGCAGAACACTGA-ATGAAGGGAACATTAGACTCACCAGCGATGGCTCGAGCGA 11845 | || | || ||| || | ||| || ||||||| ||||| || |||| || | Sbjct 54765 CTCTGATCCGGA-CACAGACAGGAATGGCACATTAGCTTCACCGGCTGTGGCCTTCGCAA 54707 Query 11846 GGAGAGTCTTACCCGTACCAGGTGCACCAGCGAGAAGGGCGCCACGGGGGATCTTGGCAC 11905 | || || || || || || || | ||| | ||| | ||||| ||||||||||||| Sbjct 54706 GAAGGGTTTTGCCGGTTCCGGGAGGACCGGTGAGCATTGCGCCTTTTGGGATCTTGGCAC 54647 Query 11906 CACTTCCAAAGTAGCGCTCAGGCTTCTTGAGGAAGTCCACAATCTCCTCAAGTTCCTCCT 11965 || ||| ||| ||| ||| ||||| | |||| |||| ||| || |||| || Sbjct 54646 CAAGATCAATGTATTGCTGAGGGTTCTTCAAAAAGTTTACAAATTCCATAATTTCCAGCT 54587 Query 11966 TGGC 11969 |||| Sbjct 54586 TGGC 54583 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588825457734400