Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Varroa_20destructor_20[genbank_20GCA_5F000181155.2_202017-05-09]
20,448 sequences; 331,927,360 total letters
Query= NC_014767.1
Length=184095
Score E
Sequences producing significant alignments: (Bits) Value
seq19295 105 8e-18
seq2549 86.0 7e-12
>seq19295
Length=205138
Score = 105 bits (116), Expect = 8e-18
Identities = 283/425 (67%), Gaps = 12/425 (3%)
Strand=Plus/Plus
Query 167359 CCCGTACCAATACCTTCAGTACCGTTTACCAAAACCATCGGTAGAGTTGGCATGTAAAAG 167418
||||| || |||||||||| |||||| || || | ||| || | | | |||| || |||
Sbjct 36567 CCCGTGCCGATACCTTCAGCACCGTTAACTAAGATCATTGGAATAATAGGCAGATAGAAG 36626
Query 167419 TCGGGTTCAATGGAACGACCATCATCATCCAAGTAGTTGAGAATGGCATCATCTTTGGGA 167478
||||||||||| | ||||||| | |||||||| | || |||||| | |
Sbjct 36627 TCGGGTTCAATCTTCTGGTTATCATCAAAGAGATAGTTGAGCACGGGATCATCCGAAGTA 36686
Query 167479 TCGAAGAGCTTTCGAGCCTCCTTGGTAAGCTTCGTAAAGATGTACCTCGTCTGAGACGC- 167537
|| || |||| ||| | | || || || || |||||||| | | |||||
Sbjct 36687 GGAAATAGACTTCGTGCCAATGGGCTGAGTTTTGTGAAAATGTACCTGG---GTGACGCA 36743
Query 167538 --ATCCTTGCCACCCATGAGGCGTGTACCAAATTGACCACATGGCTCGAGAAGATTGATG 167595
||| ||||||||| || || ||||| |||||||| |||| || || ||||||
Sbjct 36744 GAATCTTTGCCACCCTGCAGCCGAGTACCGAATTGACCGATGGGCTGCAGTAGGTTGATG 36803
Query 167596 TTATTCGACCCCGTATAATCGTTGGCCAACTTGACGATCGT-TTCAGCGAGGGAAACTTC 167654
||||| ||| ||| | |||||| |||||||| || ||| || || |||
Sbjct 36804 TTATTACTGCCCACGAAATTTTGGGCCAAGTTGACGATTGTCATCA-TTAGCGACTGTTC 36862
Query 167655 GCCGTGGTGGTAAGCACTCTTTTCAGCCACATATGCTGCCAACTGTGCAACCTT--CATC 167712
|||||||| || || | |||| || || || | || | ||| ||||| || | ||
Sbjct 36863 ACCGTGGTGATACGCCGACATTTCTGCTACGGATCCAGCAAGCTGGGCAACTTTGACTTC 36922
Query 167713 TCATCTTTGAGATTCTTTTGGAAACATGAATACATAACCTTGCGTTGAGAAGGTTTGAGA 167772
|| ||| | ||| | | ||| || | ||| ||||| || || ||||| |||
Sbjct 36923 TC-GCTTATCG-TTCCTCTTGAAGCAGGTGAACAATACCTTACGCTGTCCTGGTTTAAGA 36980
Query 167773 CCATC 167777
|||||
Sbjct 36981 CCATC 36985
>seq2549
Length=104673
Score = 86.0 bits (94), Expect = 7e-12
Identities = 203/304 (67%), Gaps = 2/304 (1%)
Strand=Plus/Minus
Query 11667 ACGCTTCTTACCGACAGCGTCAATCTCATCGATGAATACGATACACGGTTGGTTGGCACG 11726
|||||| ||| || |||||||| ||||| ||||| | || || || ||| ||
Sbjct 54885 ACGCTTTCGACCAACGGCGTCAATTTCATCAATGAACAATATGCATGGGGCGTTTTTCCG 54826
Query 11727 TGCCTGTTCGAAAAGTTCACGTACACGCTTCGCTCCAACACCTACGAACATCTCAACGAA 11786
|||| | || | ||||| || || | ||||| || |||||||| |||| ||
Sbjct 54825 TGCCATGGCAAACATGTCACGAACTCGAGATGGGCCAACGCCGACGAACATTTCAAGAAA 54766
Query 11787 GTTTGCGGCAGAACACTGA-ATGAAGGGAACATTAGACTCACCAGCGATGGCTCGAGCGA 11845
| || | || ||| || | ||| || ||||||| ||||| || |||| || |
Sbjct 54765 CTCTGATCCGGA-CACAGACAGGAATGGCACATTAGCTTCACCGGCTGTGGCCTTCGCAA 54707
Query 11846 GGAGAGTCTTACCCGTACCAGGTGCACCAGCGAGAAGGGCGCCACGGGGGATCTTGGCAC 11905
| || || || || || || || | ||| | ||| | ||||| |||||||||||||
Sbjct 54706 GAAGGGTTTTGCCGGTTCCGGGAGGACCGGTGAGCATTGCGCCTTTTGGGATCTTGGCAC 54647
Query 11906 CACTTCCAAAGTAGCGCTCAGGCTTCTTGAGGAAGTCCACAATCTCCTCAAGTTCCTCCT 11965
|| ||| ||| ||| ||| ||||| | |||| |||| ||| || |||| ||
Sbjct 54646 CAAGATCAATGTATTGCTGAGGGTTCTTCAAAAAGTTTACAAATTCCATAATTTCCAGCT 54587
Query 11966 TGGC 11969
||||
Sbjct 54586 TGGC 54583
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 588825457734400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |