Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Varroa_20destructor_20[genbank_20GCA_5F000181155.2_202017-05-09] 20,448 sequences; 331,927,360 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq19295 102 1e-16 >seq19295 Length=205138 Score = 102 bits (112), Expect = 1e-16 Identities = 276/420 (66%), Gaps = 2/420 (0%) Strand=Plus/Plus Query 168291 CCCGTACCGATACCTTCGGTTCCATTCACGAGAACCATTGGTATGGTTGGCATGTAAAAG 168350 ||||| ||||||||||| | || || || | | |||||| || | |||| || ||| Sbjct 36567 CCCGTGCCGATACCTTCAGCACCGTTAACTAAGATCATTGGAATAATAGGCAGATAGAAG 36626 Query 168351 TCTGGTTCAATTGAGCGCCCATCATCATCCAAGTAGTTGAGGATCGGGTCATCCCGAGGA 168410 || |||||||| | ||||||| | |||||||| | || |||||| || | Sbjct 36627 TCGGGTTCAATCTTCTGGTTATCATCAAAGAGATAGTTGAGCACGGGATCATCCGAAGTA 36686 Query 168411 TCAAAGATCTTGCGAGCCTCTTTGGTAAGTTTTGTGAAAATGTACCTCGTCTGA-GAAGC 168469 ||| | | || ||| | | | |||||||||||||||||||| | ||| | || Sbjct 36687 GGAAATAGACTTCGTGCCAATGGGCTGAGTTTTGTGAAAATGTACCT-GGGTGACGCAGA 36745 Query 168470 ATCCTTACCACCCATGAGACGCGTACCAAATTGACCACACGGTTCAAGAAGGTTAATGTT 168529 ||| || |||||| || || ||||| |||||||| || | || ||||| ||||| Sbjct 36746 ATCTTTGCCACCCTGCAGCCGAGTACCGAATTGACCGATGGGCTGCAGTAGGTTGATGTT 36805 Query 168530 GTTTGAACCCGTGTAGTCGTTTGCCAACTTAACAATCGTGTCCGCTAAGGATACTTCACC 168589 || ||| | | | | ||||| || || || || | || || |||||| Sbjct 36806 ATTACTGCCCACGAAATTTTGGGCCAAGTTGACGATTGTCATCATTAGCGACTGTTCACC 36865 Query 168590 ATGGTGGTACGCAGACTTGTCCGCGACATATGCCGCCAGTTGTGCCACCTTCATTTCATC 168649 ||||| ||||| ||| | || || || || | || || || || || || | ||| Sbjct 36866 GTGGTGATACGCCGACATTTCTGCTACGGATCCAGCAAGCTGGGCAACTTTGACTTCTCG 36925 Query 168650 CTTGAGATTCTTATGGAAGCAAGCATACATCACTTTCCTCTGTGAAGGCTTGAGACCATC 168709 ||| ||| | | |||||| | ||| || || | |||| || || |||||||| Sbjct 36926 CTTATCGTTCCTCTTGAAGCAGGTGAACAATACCTTACGCTGTCCTGGTTTAAGACCATC 36985 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589830000907520