Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Varroa_20destructor_20[genbank_20GCA_5F000181155.2_202017-05-09] 20,448 sequences; 331,927,360 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq19980 165 2e-35 seq7231 161 2e-34 >seq19980 Length=299602 Score = 165 bits (182), Expect = 2e-35 Identities = 162/209 (78%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 |||||||| || |||||||| |||||||||||||| || | ||| || | |||||||| Sbjct 144944 ACAAGGTGGAGGGTGGACTCCTTTTGAATATTGTAGTCCGAAAGGGTGCGTCCATCTTCA 144885 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || || ||||| | || ||||| || || ||||| ||||| ||||||||| Sbjct 144884 AGCTGCTTTCCGGCAAAGATCAATCTCTGTTGATCGGGGGGAATTCCTTCCTTGTCTTGA 144825 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || || ||| ||||||||||| || || ||| |||||||| | ||| | ||||| Sbjct 144824 ATCTTGGCCTTTACGTTCTCAATTGTATCAGAAGGCTCCACTTCCAAGGTGATGGTCTTC 144765 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || | ||||| ||||| | |||||| Sbjct 144764 CCAGTAAGGGTTTTGACGAAAATTTGCAT 144736 Score = 150 bits (166), Expect = 4e-31 Identities = 169/225 (75%), Gaps = 6/225 (3%) Strand=Plus/Minus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 || |||||||| || || ||||| || |||||||||||||| ||||| |||| || || Sbjct 145185 TCGGAGTCTCAGCACCAGATGAAGGGTAGACTCTTTTTGAATGTTGTAGTCGGAGAGCGT 145126 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 | ||||| |||||||| || |||||||| || | | |||||| || || ||||| || Sbjct 145125 GCGACCATCCTCGAGCTGTTTGCCTGCGAAAATCAACCTTTGTTGATCGGGGGGAATTCC 145066 Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTT---TCCACTTC 195095 ||| |||||||||||||| || ||||||||||| || || ||| || ||||| Sbjct 145065 TTCCTTGTCTTGAATTTTGGCTTTAACGTTCTCAATCGTATC---GCTTGGCTCGACTTC 145009 Query 195096 AAGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 ||| || | ||| ||||| || | ||||| || || | ||||| Sbjct 145008 AAGAGTGATCGTTTTTCCGGTAAGCGTTTTAACAAAAATCTGCAT 144964 Score = 147 bits (162), Expect = 5e-30 Identities = 158/209 (76%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 ||||| |||||||||||||| ||||| |||||||| || | |||||| | |||||||| Sbjct 144716 ACAAGATGAAGAGTGGACTCCTTTTGGATATTGTAGTCTGAAAGAGTACGTCCATCTTCT 144657 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 || || ||||| || ||||| || | || || || || || || || ||||||||||| Sbjct 144656 AGTTGTTTACCGGCAAAGATTAGCCTCTGCTGATCAGGGGGGATACCCTCTTTGTCTTGG 144597 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 ||||| ||| || |||||||| ||||| ||| ||| || || ||||| | || || Sbjct 144596 ATTTTCGCCTTAACATTCTCAATTGTGTCAGAAGGTTCAACCTCCAGGGTGATGGTTTTC 144537 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || | ||| ||||| || | ||||| Sbjct 144536 CCGGTGAGAGTCTTTACAAAGATCTGCAT 144508 >seq7231 Length=219762 Score = 161 bits (178), Expect = 2e-34 Identities = 167/219 (76%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 194923 AGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTC 194982 ||||| | ||||| || || |||||||||||||| |||||||| || | |||||| | Sbjct 100673 AGTCTAAGTACAAGATGGAGCGTGGACTCTTTTTGGATATTGTAGTCCGAAAGAGTACGT 100732 Query 194983 CCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCT 195042 || ||||| | ||| || || || ||||| | || ||||||||||| ||||| || || Sbjct 100733 CCGTCTTCCAACTGTTTTCCAGCAAAGATTAATCTCTGTTGGTCTGGGGGAATACCCTCC 100792 Query 195043 TTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTA 195102 ||||||||||| ||| |||||| || || || || || ||| |||||| |||||||| Sbjct 100793 TTGTCTTGAATCTTTGCCTTGACATTTTCGATTGTATCTGAAGATTCCACCTCAAGGGTG 100852 Query 195103 ACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCATT 195141 | ||||| || || | ||||| ||||| | |||||| Sbjct 100853 ATAGTCTTACCGGTTAGGGTTTTCACGAAAATCTGCATT 100891 Score = 154 bits (170), Expect = 3e-32 Identities = 157/205 (77%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996 ||| ||||| || ||||| |||||||||||||||| || || | ||||| ||||| || Sbjct 92180 GTGCAGAGTTGATTCTTTCTGAATATTGTAATCGGACAGGGTACGTCCATCCTCGAGTTG 92239 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 || || ||||| ||||| || || || || || || |||||||| || || |||||||| Sbjct 92240 TTTTCCAGCGAATATAAGACGCTGCTGATCAGGGGGGATGCCTTCCTTATCCTGAATTTT 92299 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 | ||| ||||| || ||||| ||||| || || |||||||| | || ||||| || Sbjct 92300 TGCCTTTACGTTTTCGATGGTATCCGAGGGCTCAACCTCAAGGGTTATGGTTTTTCCGGT 92359 Query 195117 CAAAGTTTTTACGAACACTTGCATT 195141 ||| || || ||||| | ||||||| Sbjct 92360 CAACGTCTTAACGAAAATTTGCATT 92384 Score = 154 bits (170), Expect = 3e-32 Identities = 165/218 (76%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 194923 AGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTC 194982 |||| | |||||| || || |||||||||||||| |||||||| || | ||| || | Sbjct 100445 AGTCGAAGAACAAGATGGAGGGTGGACTCTTTTTGGATATTGTAGTCTGAAAGGGTACGA 100504 Query 194983 CCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCT 195042 || ||||| || || ||||| || ||||| | | ||||| |||||||| || |||||| Sbjct 100505 CCGTCTTCAAGTTGTTTACCGGCAAAGATCAACCTCTGTTGATCTGGAGGGATACCTTCT 100564 Query 195043 TTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTA 195102 |||||||| ||||| || || |||||||| ||||| || || ||||| |||||| Sbjct 100565 TTGTCTTGGATTTTCGCTTTAACATTCTCAATTGTGTCAGAGGGCTCAACTTCCAGGGTA 100624 Query 195103 ACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 | |||||||| || | ||||| ||||| | ||||| Sbjct 100625 ATAGTCTTTCCGGTAAGGGTTTTCACGAAGATCTGCAT 100662 Score = 147 bits (162), Expect = 5e-30 Identities = 159/211 (75%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || ||||||||||| || || || || ||||||||||||| || || | || || || Sbjct 93918 ACGAGGTGAAGAGTCGATTCCTTCTGTATATTGTAATCGGAGAGTGTGCGACCGTCCTCT 93977 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || ||||| || || || || || ||||| ||||| |||||||| || || Sbjct 93978 AGCTGCTTGCCAGCGAAAATCAGACGCTGCTGATCTGGTGGAATACCTTCTTTATCCTGG 94037 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || ||| |||||||||||| || |||||||| | || || || || || | || || Sbjct 94038 ATCTTTGTCTTGACGTTCTCGATCGTGTCCGATCCCTCTACGTCTAGAGTGATAGTTTTC 94097 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCATTT 195142 || || || ||||| || || | |||||||| Sbjct 94098 CCAGTTAATGTTTTCACAAAGATTTGCATTT 94128 Score = 141 bits (156), Expect = 2e-28 Identities = 166/223 (74%), Gaps = 6/223 (3%) Strand=Plus/Plus Query 194922 GAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCT 194981 |||||| | || || |||||||| |||||||| ||||| || || || | ||||| | Sbjct 99988 GAGTCTGAGCACCAGATGAAGAGTAGACTCTTTCTGAATGTTATAGTCAGATAGAGTACG 100047 Query 194982 CCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTC 195041 |||||||||||||| ||||| || || || || | ||||| || ||||| || ||||| Sbjct 100048 ACCATCTTCGAGCTGTTTACCAGCAAAAATTAGCCTCTGTTGATCAGGAGGGATTCCTTC 100107 Query 195042 TTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAG 195098 |||||| |||||||| ||||||||| |||||||| || ||| ||| || || || Sbjct 100108 TTTGTCCTGAATTTTGGCCTTGACGTTTTCAATGGTATC---ACTGGATTCTACCTCGAG 100164 Query 195099 GGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCATT 195141 || | || || ||||| | || || ||||| | |||||| Sbjct 100165 TGTGATAGTTTTGCCTGTGAGCGTCTTCACGAAAATCTGCATT 100207 Score = 138 bits (152), Expect = 3e-27 Identities = 156/209 (75%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || ||||| ||||| |||||||| ||||| || || || | || |||| || ||||| Sbjct 100226 ACGAGGTGTAGAGTAGACTCTTTCTGAATGTTATAGTCTGATAGCGTTCGGCCGTCTTCA 100285 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || || ||||| | | ||| || || || ||||| ||||| ||||||||| Sbjct 100286 AGCTGCTTGCCAGCAAAGATTAACCTTTGCTGATCGGGCGGAATACCTTCCTTGTCTTGA 100345 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || ||| ||| ||||| || || || || | ||| || || || || | ||||||| Sbjct 100346 ATCTTTGCCTTAACGTTTTCGATTGTATCGCTAGGTTCAACCTCTAGAGTGATCGTCTTT 100405 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || |||| ||||||||||| | ||||| Sbjct 100406 CCGGTCAGCGTTTTTACGAAGATCTGCAT 100434 Score = 122 bits (134), Expect = 2e-22 Identities = 153/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 ||||| || |||||| || || ||||| || |||||| ||| || | ||||| || Sbjct 93234 ACAAGATGGAGAGTGCTTTCCTTCTGAATGTTATAATCGTTAAGGGTGCGGCCATCCTCC 93293 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 | ||| || || || || || | ||||| ||||| ||||||||||| |||||||| || Sbjct 93294 AACTGTTTTCCAGCAAAAATCAAACGTTGCTGGTCAGGAGGAATGCCCTCTTTGTCCTGG 93353 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || ||| ||||| || ||||| ||||| || || |||||||| || | |||||| Sbjct 93354 ATCTTTGCTTTGACATTTTCAATTGTGTCGGATGGCTCGACTTCAAGCGTGATCGTCTTG 93413 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCATT 195141 || || | ||| || || || | |||||| Sbjct 93414 CCGGTGAGAGTCTTGACAAAGATCTGCATT 93443 Score = 118 bits (130), Expect = 2e-21 Identities = 154/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 194928 CAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATC 194987 ||| || || || || || ||||| ||||||||||| ||||| | || || | || || Sbjct 93686 CAAGACGAGATGCAGTGTCGACTCCTTTTGAATATTATAATCTGAGAGGGTACGGCCGTC 93745 Query 194988 TTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTC 195047 ||| || ||||| || || ||||| || ||||| || || ||||| ||||| ||||| || Sbjct 93746 TTCCAGTTGCTTGCCAGCAAAGATCAGACGTTGCTGATCCGGAGGGATGCCCTCTTTATC 93805 Query 195048 TTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGT 195107 || |||||| ||| || || ||||| || || ||| ||||||||||| | || Sbjct 93806 CTGGATTTTTGCCTTCACATTTTCAATTGTATCGCTGGGTTCAACTTCAAGGGTGATGGT 93865 Query 195108 CTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 ||||| || | || || || || | ||||| Sbjct 93866 TTTTCCAGTGAGCGTCTTCACAAAGATCTGCAT 93898 Score = 114 bits (126), Expect = 3e-20 Identities = 143/195 (73%), Gaps = 6/195 (3%) Strand=Plus/Plus Query 194950 TCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCTGCGAAG 195009 || || || || ||||| || | || || | || || ||||| || || || || ||| Sbjct 92836 TCCTTCTGGATGTTGTAGTCCGATAGCGTGCGACCGTCCTCGAGTTGTTTTCCAGCAAAG 92895 Query 195010 ATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTGACGTTC 195069 || || || |||||||| || |||||||| ||||||||||||||||| || |||||| Sbjct 92896 ATGAGACGCTGTTGGTCAGGCGGAATGCCCTCTTTGTCTTGAATTTTCGCTTTTACGTTC 92955 Query 195070 TCAATGGTGTCCGAACTT---TCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGTTTTT 195126 ||||||||||| ||| || |||||||| || | || ||||| || | ||||| Sbjct 92956 TCAATGGTGTC---GCTTGGCTCAACTTCAAGTGTTATTGTTTTTCCCGTAAGGGTTTTC 93012 Query 195127 ACGAACACTTGCATT 195141 || || | |||||| Sbjct 93013 ACAAAAATCTGCATT 93027 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109190926915616