Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Varroa_20destructor_20[genbank_20GCA_5F000181155.2_202017-05-09]
20,448 sequences; 331,927,360 total letters
Query= NC_015326.1
Length=346754
Score E
Sequences producing significant alignments: (Bits) Value
seq19980 165 2e-35
seq7231 161 2e-34
>seq19980
Length=299602
Score = 165 bits (182), Expect = 2e-35
Identities = 162/209 (78%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991
|||||||| || |||||||| |||||||||||||| || | ||| || | ||||||||
Sbjct 144944 ACAAGGTGGAGGGTGGACTCCTTTTGAATATTGTAGTCCGAAAGGGTGCGTCCATCTTCA 144885
Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051
|||||||| || || ||||| | || ||||| || || ||||| ||||| |||||||||
Sbjct 144884 AGCTGCTTTCCGGCAAAGATCAATCTCTGTTGATCGGGGGGAATTCCTTCCTTGTCTTGA 144825
Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111
|| || ||| ||||||||||| || || ||| |||||||| | ||| | |||||
Sbjct 144824 ATCTTGGCCTTTACGTTCTCAATTGTATCAGAAGGCTCCACTTCCAAGGTGATGGTCTTC 144765
Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140
|| || | ||||| ||||| | ||||||
Sbjct 144764 CCAGTAAGGGTTTTGACGAAAATTTGCAT 144736
Score = 150 bits (166), Expect = 4e-31
Identities = 169/225 (75%), Gaps = 6/225 (3%)
Strand=Plus/Minus
Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978
|| |||||||| || || ||||| || |||||||||||||| ||||| |||| || ||
Sbjct 145185 TCGGAGTCTCAGCACCAGATGAAGGGTAGACTCTTTTTGAATGTTGTAGTCGGAGAGCGT 145126
Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038
| ||||| |||||||| || |||||||| || | | |||||| || || ||||| ||
Sbjct 145125 GCGACCATCCTCGAGCTGTTTGCCTGCGAAAATCAACCTTTGTTGATCGGGGGGAATTCC 145066
Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTT---TCCACTTC 195095
||| |||||||||||||| || ||||||||||| || || ||| || |||||
Sbjct 145065 TTCCTTGTCTTGAATTTTGGCTTTAACGTTCTCAATCGTATC---GCTTGGCTCGACTTC 145009
Query 195096 AAGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140
||| || | ||| ||||| || | ||||| || || | |||||
Sbjct 145008 AAGAGTGATCGTTTTTCCGGTAAGCGTTTTAACAAAAATCTGCAT 144964
Score = 147 bits (162), Expect = 5e-30
Identities = 158/209 (76%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991
||||| |||||||||||||| ||||| |||||||| || | |||||| | ||||||||
Sbjct 144716 ACAAGATGAAGAGTGGACTCCTTTTGGATATTGTAGTCTGAAAGAGTACGTCCATCTTCT 144657
Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051
|| || ||||| || ||||| || | || || || || || || || |||||||||||
Sbjct 144656 AGTTGTTTACCGGCAAAGATTAGCCTCTGCTGATCAGGGGGGATACCCTCTTTGTCTTGG 144597
Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111
||||| ||| || |||||||| ||||| ||| ||| || || ||||| | || ||
Sbjct 144596 ATTTTCGCCTTAACATTCTCAATTGTGTCAGAAGGTTCAACCTCCAGGGTGATGGTTTTC 144537
Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140
|| || | ||| ||||| || | |||||
Sbjct 144536 CCGGTGAGAGTCTTTACAAAGATCTGCAT 144508
>seq7231
Length=219762
Score = 161 bits (178), Expect = 2e-34
Identities = 167/219 (76%), Gaps = 0/219 (0%)
Strand=Plus/Plus
Query 194923 AGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTC 194982
||||| | ||||| || || |||||||||||||| |||||||| || | |||||| |
Sbjct 100673 AGTCTAAGTACAAGATGGAGCGTGGACTCTTTTTGGATATTGTAGTCCGAAAGAGTACGT 100732
Query 194983 CCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCT 195042
|| ||||| | ||| || || || ||||| | || ||||||||||| ||||| || ||
Sbjct 100733 CCGTCTTCCAACTGTTTTCCAGCAAAGATTAATCTCTGTTGGTCTGGGGGAATACCCTCC 100792
Query 195043 TTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTA 195102
||||||||||| ||| |||||| || || || || || ||| |||||| ||||||||
Sbjct 100793 TTGTCTTGAATCTTTGCCTTGACATTTTCGATTGTATCTGAAGATTCCACCTCAAGGGTG 100852
Query 195103 ACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCATT 195141
| ||||| || || | ||||| ||||| | ||||||
Sbjct 100853 ATAGTCTTACCGGTTAGGGTTTTCACGAAAATCTGCATT 100891
Score = 154 bits (170), Expect = 3e-32
Identities = 157/205 (77%), Gaps = 0/205 (0%)
Strand=Plus/Plus
Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996
||| ||||| || ||||| |||||||||||||||| || || | ||||| ||||| ||
Sbjct 92180 GTGCAGAGTTGATTCTTTCTGAATATTGTAATCGGACAGGGTACGTCCATCCTCGAGTTG 92239
Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056
|| || ||||| ||||| || || || || || || |||||||| || || ||||||||
Sbjct 92240 TTTTCCAGCGAATATAAGACGCTGCTGATCAGGGGGGATGCCTTCCTTATCCTGAATTTT 92299
Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116
| ||| ||||| || ||||| ||||| || || |||||||| | || ||||| ||
Sbjct 92300 TGCCTTTACGTTTTCGATGGTATCCGAGGGCTCAACCTCAAGGGTTATGGTTTTTCCGGT 92359
Query 195117 CAAAGTTTTTACGAACACTTGCATT 195141
||| || || ||||| | |||||||
Sbjct 92360 CAACGTCTTAACGAAAATTTGCATT 92384
Score = 154 bits (170), Expect = 3e-32
Identities = 165/218 (76%), Gaps = 0/218 (0%)
Strand=Plus/Plus
Query 194923 AGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTC 194982
|||| | |||||| || || |||||||||||||| |||||||| || | ||| || |
Sbjct 100445 AGTCGAAGAACAAGATGGAGGGTGGACTCTTTTTGGATATTGTAGTCTGAAAGGGTACGA 100504
Query 194983 CCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCT 195042
|| ||||| || || ||||| || ||||| | | ||||| |||||||| || ||||||
Sbjct 100505 CCGTCTTCAAGTTGTTTACCGGCAAAGATCAACCTCTGTTGATCTGGAGGGATACCTTCT 100564
Query 195043 TTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTA 195102
|||||||| ||||| || || |||||||| ||||| || || ||||| ||||||
Sbjct 100565 TTGTCTTGGATTTTCGCTTTAACATTCTCAATTGTGTCAGAGGGCTCAACTTCCAGGGTA 100624
Query 195103 ACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140
| |||||||| || | ||||| ||||| | |||||
Sbjct 100625 ATAGTCTTTCCGGTAAGGGTTTTCACGAAGATCTGCAT 100662
Score = 147 bits (162), Expect = 5e-30
Identities = 159/211 (75%), Gaps = 0/211 (0%)
Strand=Plus/Plus
Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991
|| ||||||||||| || || || || ||||||||||||| || || | || || ||
Sbjct 93918 ACGAGGTGAAGAGTCGATTCCTTCTGTATATTGTAATCGGAGAGTGTGCGACCGTCCTCT 93977
Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051
|||||||| || ||||| || || || || || ||||| ||||| |||||||| || ||
Sbjct 93978 AGCTGCTTGCCAGCGAAAATCAGACGCTGCTGATCTGGTGGAATACCTTCTTTATCCTGG 94037
Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111
|| ||| |||||||||||| || |||||||| | || || || || || | || ||
Sbjct 94038 ATCTTTGTCTTGACGTTCTCGATCGTGTCCGATCCCTCTACGTCTAGAGTGATAGTTTTC 94097
Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCATTT 195142
|| || || ||||| || || | ||||||||
Sbjct 94098 CCAGTTAATGTTTTCACAAAGATTTGCATTT 94128
Score = 141 bits (156), Expect = 2e-28
Identities = 166/223 (74%), Gaps = 6/223 (3%)
Strand=Plus/Plus
Query 194922 GAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCT 194981
|||||| | || || |||||||| |||||||| ||||| || || || | ||||| |
Sbjct 99988 GAGTCTGAGCACCAGATGAAGAGTAGACTCTTTCTGAATGTTATAGTCAGATAGAGTACG 100047
Query 194982 CCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTC 195041
|||||||||||||| ||||| || || || || | ||||| || ||||| || |||||
Sbjct 100048 ACCATCTTCGAGCTGTTTACCAGCAAAAATTAGCCTCTGTTGATCAGGAGGGATTCCTTC 100107
Query 195042 TTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAG 195098
|||||| |||||||| ||||||||| |||||||| || ||| ||| || || ||
Sbjct 100108 TTTGTCCTGAATTTTGGCCTTGACGTTTTCAATGGTATC---ACTGGATTCTACCTCGAG 100164
Query 195099 GGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCATT 195141
|| | || || ||||| | || || ||||| | ||||||
Sbjct 100165 TGTGATAGTTTTGCCTGTGAGCGTCTTCACGAAAATCTGCATT 100207
Score = 138 bits (152), Expect = 3e-27
Identities = 156/209 (75%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991
|| ||||| ||||| |||||||| ||||| || || || | || |||| || |||||
Sbjct 100226 ACGAGGTGTAGAGTAGACTCTTTCTGAATGTTATAGTCTGATAGCGTTCGGCCGTCTTCA 100285
Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051
|||||||| || || ||||| | | ||| || || || ||||| ||||| |||||||||
Sbjct 100286 AGCTGCTTGCCAGCAAAGATTAACCTTTGCTGATCGGGCGGAATACCTTCCTTGTCTTGA 100345
Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111
|| ||| ||| ||||| || || || || | ||| || || || || | |||||||
Sbjct 100346 ATCTTTGCCTTAACGTTTTCGATTGTATCGCTAGGTTCAACCTCTAGAGTGATCGTCTTT 100405
Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140
|| |||| ||||||||||| | |||||
Sbjct 100406 CCGGTCAGCGTTTTTACGAAGATCTGCAT 100434
Score = 122 bits (134), Expect = 2e-22
Identities = 153/210 (73%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991
||||| || |||||| || || ||||| || |||||| ||| || | ||||| ||
Sbjct 93234 ACAAGATGGAGAGTGCTTTCCTTCTGAATGTTATAATCGTTAAGGGTGCGGCCATCCTCC 93293
Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051
| ||| || || || || || | ||||| ||||| ||||||||||| |||||||| ||
Sbjct 93294 AACTGTTTTCCAGCAAAAATCAAACGTTGCTGGTCAGGAGGAATGCCCTCTTTGTCCTGG 93353
Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111
|| ||| ||||| || ||||| ||||| || || |||||||| || | ||||||
Sbjct 93354 ATCTTTGCTTTGACATTTTCAATTGTGTCGGATGGCTCGACTTCAAGCGTGATCGTCTTG 93413
Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCATT 195141
|| || | ||| || || || | ||||||
Sbjct 93414 CCGGTGAGAGTCTTGACAAAGATCTGCATT 93443
Score = 118 bits (130), Expect = 2e-21
Identities = 154/213 (72%), Gaps = 0/213 (0%)
Strand=Plus/Plus
Query 194928 CAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATC 194987
||| || || || || || ||||| ||||||||||| ||||| | || || | || ||
Sbjct 93686 CAAGACGAGATGCAGTGTCGACTCCTTTTGAATATTATAATCTGAGAGGGTACGGCCGTC 93745
Query 194988 TTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTC 195047
||| || ||||| || || ||||| || ||||| || || ||||| ||||| ||||| ||
Sbjct 93746 TTCCAGTTGCTTGCCAGCAAAGATCAGACGTTGCTGATCCGGAGGGATGCCCTCTTTATC 93805
Query 195048 TTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGT 195107
|| |||||| ||| || || ||||| || || ||| ||||||||||| | ||
Sbjct 93806 CTGGATTTTTGCCTTCACATTTTCAATTGTATCGCTGGGTTCAACTTCAAGGGTGATGGT 93865
Query 195108 CTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140
||||| || | || || || || | |||||
Sbjct 93866 TTTTCCAGTGAGCGTCTTCACAAAGATCTGCAT 93898
Score = 114 bits (126), Expect = 3e-20
Identities = 143/195 (73%), Gaps = 6/195 (3%)
Strand=Plus/Plus
Query 194950 TCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCTGCGAAG 195009
|| || || || ||||| || | || || | || || ||||| || || || || |||
Sbjct 92836 TCCTTCTGGATGTTGTAGTCCGATAGCGTGCGACCGTCCTCGAGTTGTTTTCCAGCAAAG 92895
Query 195010 ATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTGACGTTC 195069
|| || || |||||||| || |||||||| ||||||||||||||||| || ||||||
Sbjct 92896 ATGAGACGCTGTTGGTCAGGCGGAATGCCCTCTTTGTCTTGAATTTTCGCTTTTACGTTC 92955
Query 195070 TCAATGGTGTCCGAACTT---TCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGTTTTT 195126
||||||||||| ||| || |||||||| || | || ||||| || | |||||
Sbjct 92956 TCAATGGTGTC---GCTTGGCTCAACTTCAAGTGTTATTGTTTTTCCCGTAAGGGTTTTC 93012
Query 195127 ACGAACACTTGCATT 195141
|| || | ||||||
Sbjct 93013 ACAAAAATCTGCATT 93027
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1109190926915616
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