Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Varroa_20destructor_20[genbank_20GCA_5F000181155.2_202017-05-09]
20,448 sequences; 331,927,360 total letters
Query= NC_015398.1
Length=101487
Score E
Sequences producing significant alignments: (Bits) Value
seq7231 116 2e-21
seq19980 96.9 2e-15
>seq7231
Length=219762
Score = 116 bits (128), Expect = 2e-21
Identities = 144/197 (73%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 34785 GTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCG 34844
|||||||| ||||| ||||| |||||||| || | || | || || || ||||||||
Sbjct 92830 GTGCTTTCCTTCTGGATGTTGTAGTCCGATAGCGTGCGACCGTCCTCGAGTTGTTTTCCA 92889
Query 34845 GCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTG 34904
||||| || || || || ||||| |||| | ||||| ||||| ||| ||| |||
Sbjct 92890 GCAAAGATGAGACGCTGTTGGTCAGGCGGAATGCCCTCTTTGTCTTGAATTTTCGCTTTT 92949
Query 34905 ACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTC 34964
||| | || | || | | |||||| || | ||||| ||||||||||| || ||
Sbjct 92950 ACGTTCTCAATGGTGTCGCTTGGCTCAACTTCAAGTGTTATTGTTTTTCCCGTAAGGGTT 93009
Query 34965 TTCACAAAGATCTGCAT 34981
|||||||| ||||||||
Sbjct 93010 TTCACAAAAATCTGCAT 93026
Score = 113 bits (124), Expect = 3e-20
Identities = 143/197 (73%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 34785 GTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCG 34844
|||||||| |||||||||||||| || |||| | || |||| |||| |||||||||
Sbjct 93246 GTGCTTTCCTTCTGAATGTTATAATCGTTAAGGGTGCGGCCATCCTCCAACTGTTTTCCA 93305
Query 34845 GCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTG 34904
||||| || | ||||||||||| | || | ||||| ||||| ||||| ||||
Sbjct 93306 GCAAAAATCAAACGTTGCTGGTCAGGAGGAATGCCCTCTTTGTCCTGGATCTTTGCTTTG 93365
Query 34905 ACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTC 34964
|| | | || | || | ||| || || | || || || || || |||||||||
Sbjct 93366 ACATTTTCAATTGTGTCGGATGGCTCGACTTCAAGCGTGATCGTCTTGCCGGTGAGAGTC 93425
Query 34965 TTCACAAAGATCTGCAT 34981
|| ||||||||||||||
Sbjct 93426 TTGACAAAGATCTGCAT 93442
Score = 111 bits (122), Expect = 1e-19
Identities = 150/209 (72%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832
|||||||||| |||||||| || |||||||| ||||| || | || |||| ||
Sbjct 93462 ACCAAGTGAAGCGTGCTTTCCTTTTGAATGTTGTAGTCACTGAGTGTGCGACCATCCTCG 93521
Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892
|| ||||||||||| || || || ||||||||||| | || | |||||||||||
Sbjct 93522 AGTTGTTTTCCGGCGAAAATGAGACGTTGCTGGTCAGGAGGAATACCCTCCTTGTCCTGG 93581
Query 34893 ATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTT 34952
|| || || ||| | | || | || | || ||||| || | || || || ||
Sbjct 93582 ATTTTGGCCTTCACGTTTTCAATTGTATCGCTGGGTTCAACCTCAAGTGTGATAGTCTTC 93641
Query 34953 CCCGTGAGAGTCTTCACAAAGATCTGCAT 34981
|||||||| ||||| || |||||||||||
Sbjct 93642 CCCGTGAGGGTCTTGACGAAGATCTGCAT 93670
Score = 102 bits (112), Expect = 5e-17
Identities = 137/191 (72%), Gaps = 0/191 (0%)
Strand=Plus/Plus
Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850
|||||||||||||||||||| || || | || |||| || |||||||| || |||||
Sbjct 100016 TCTTTCTGAATGTTATAGTCAGATAGAGTACGACCATCTTCGAGCTGTTTACCAGCAAAA 100075
Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910
||||| | || || || | || | || || ||||| ||| || |||||| |
Sbjct 100076 ATTAGCCTCTGTTGATCAGGAGGGATTCCTTCTTTGTCCTGAATTTTGGCCTTGACGTTT 100135
Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970
| || | |||| || || || |||| || || ||||| || ||||| ||||||||
Sbjct 100136 TCAATGGTATCACTGGATTCTACCTCGAGTGTGATAGTTTTGCCTGTGAGCGTCTTCACG 100195
Query 34971 AAGATCTGCAT 34981
|| ||||||||
Sbjct 100196 AAAATCTGCAT 100206
Score = 98.7 bits (108), Expect = 6e-16
Identities = 147/209 (70%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832
|||||||| | || |||||||||||| || || || || ||| | ||| |||| ||
Sbjct 92175 ACCAAGTGCAGAGTTGATTCTTTCTGAATATTGTAATCGGACAGGGTACGTCCATCCTCG 92234
Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892
|| |||||||| || ||||| || || ||||| || | || | || ||||| || |
Sbjct 92235 AGTTGTTTTCCAGCGAATATAAGACGCTGCTGATCAGGGGGGATGCCTTCCTTATCCTGA 92294
Query 34893 ATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTT 34952
|| || || ||| | | || | || || |||||| || | |||||||||||||
Sbjct 92295 ATTTTTGCCTTTACGTTTTCGATGGTATCCGAGGGCTCAACCTCAAGGGTTATGGTTTTT 92354
Query 34953 CCCGTGAGAGTCTTCACAAAGATCTGCAT 34981
|| || | ||||| || || || |||||
Sbjct 92355 CCGGTCAACGTCTTAACGAAAATTTGCAT 92383
Score = 95.1 bits (104), Expect = 8e-15
Identities = 136/192 (71%), Gaps = 0/192 (0%)
Strand=Plus/Plus
Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850
|||||||||||||||||||| || || |||| | || || ||||| || || |||||
Sbjct 100244 TCTTTCTGAATGTTATAGTCTGATAGCGTTCGGCCGTCTTCAAGCTGCTTGCCAGCAAAG 100303
Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910
|||| | |||||| || |||| | || |||||||| |||||| || ||| |
Sbjct 100304 ATTAACCTTTGCTGATCGGGCGGAATACCTTCCTTGTCTTGAATCTTTGCCTTAACGTTT 100363
Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970
| || | || | | ||||| || | || || || ||||| || || || || ||
Sbjct 100364 TCGATTGTATCGCTAGGTTCAACCTCTAGAGTGATCGTCTTTCCGGTCAGCGTTTTTACG 100423
Query 34971 AAGATCTGCATA 34982
||||||||||||
Sbjct 100424 AAGATCTGCATA 100435
Score = 93.3 bits (102), Expect = 3e-14
Identities = 135/191 (71%), Gaps = 0/191 (0%)
Strand=Plus/Plus
Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850
|| || ||||| ||||| || || ||| | || | || ||||| || || || |||||
Sbjct 93708 TCCTTTTGAATATTATAATCTGAGAGGGTACGGCCGTCTTCCAGTTGCTTGCCAGCAAAG 93767
Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910
|| || |||||||| || | || | ||||| || || || || || || |
Sbjct 93768 ATCAGACGTTGCTGATCCGGAGGGATGCCCTCTTTATCCTGGATTTTTGCCTTCACATTT 93827
Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970
| || | || | || ||||| || | ||| ||||||||||| ||||| |||||||||
Sbjct 93828 TCAATTGTATCGCTGGGTTCAACTTCAAGGGTGATGGTTTTTCCAGTGAGCGTCTTCACA 93887
Query 34971 AAGATCTGCAT 34981
|||||||||||
Sbjct 93888 AAGATCTGCAT 93898
Score = 87.8 bits (96), Expect = 1e-12
Identities = 134/191 (70%), Gaps = 0/191 (0%)
Strand=Plus/Plus
Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850
||||| || || || ||||||||||| | ||| | || |||| ||||||||| |||||
Sbjct 100700 TCTTTTTGGATATTGTAGTCCGAAAGAGTACGTCCGTCTTCCAACTGTTTTCCAGCAAAG 100759
Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910
|||| || || |||||| | || | ||||||||||| |||||| ||||| |
Sbjct 100760 ATTAATCTCTGTTGGTCTGGGGGAATACCCTCCTTGTCTTGAATCTTTGCCTTGACATTT 100819
Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970
| || | || | || || || | ||| || || || || || || || |||||
Sbjct 100820 TCGATTGTATCTGAAGATTCCACCTCAAGGGTGATAGTCTTACCGGTTAGGGTTTTCACG 100879
Query 34971 AAGATCTGCAT 34981
|| ||||||||
Sbjct 100880 AAAATCTGCAT 100890
>seq19980
Length=299602
Score = 96.9 bits (106), Expect = 2e-15
Identities = 139/194 (72%), Gaps = 4/194 (2%)
Strand=Plus/Minus
Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850
|| || || || || ||||| ||||| | ||| |||| || || ||||| ||||||||
Sbjct 144698 TCCTTTTGGATATTGTAGTCTGAAAGAGTACGTCCATCTTCTAGTTGTTTACCGGCAAAG 144639
Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910
||||| | ||||| || | || | ||||| ||||| || ||| || || ||
Sbjct 144638 ATTAGCCTCTGCTGATCAGGGGGGATACCCTCTTTGTCTTGGATTTTCGCCTTAAC--AT 144581
Query 34911 GCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCA 34968
|| || | ||| | ||||| || | ||| |||||||| || ||||||||||| |
Sbjct 144580 TCTCAATTGTGTCAGAAGGTTCAACCTCCAGGGTGATGGTTTTCCCGGTGAGAGTCTTTA 144521
Query 34969 CAAAGATCTGCATA 34982
||||||||||||||
Sbjct 144520 CAAAGATCTGCATA 144507
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 324552698060544
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |