Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Varroa_20destructor_20[genbank_20GCA_5F000181155.2_202017-05-09] 20,448 sequences; 331,927,360 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq7231 116 2e-21 seq19980 96.9 2e-15 >seq7231 Length=219762 Score = 116 bits (128), Expect = 2e-21 Identities = 144/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 34785 GTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCG 34844 |||||||| ||||| ||||| |||||||| || | || | || || || |||||||| Sbjct 92830 GTGCTTTCCTTCTGGATGTTGTAGTCCGATAGCGTGCGACCGTCCTCGAGTTGTTTTCCA 92889 Query 34845 GCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTG 34904 ||||| || || || || ||||| |||| | ||||| ||||| ||| ||| ||| Sbjct 92890 GCAAAGATGAGACGCTGTTGGTCAGGCGGAATGCCCTCTTTGTCTTGAATTTTCGCTTTT 92949 Query 34905 ACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTC 34964 ||| | || | || | | |||||| || | ||||| ||||||||||| || || Sbjct 92950 ACGTTCTCAATGGTGTCGCTTGGCTCAACTTCAAGTGTTATTGTTTTTCCCGTAAGGGTT 93009 Query 34965 TTCACAAAGATCTGCAT 34981 |||||||| |||||||| Sbjct 93010 TTCACAAAAATCTGCAT 93026 Score = 113 bits (124), Expect = 3e-20 Identities = 143/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 34785 GTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCG 34844 |||||||| |||||||||||||| || |||| | || |||| |||| ||||||||| Sbjct 93246 GTGCTTTCCTTCTGAATGTTATAATCGTTAAGGGTGCGGCCATCCTCCAACTGTTTTCCA 93305 Query 34845 GCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTG 34904 ||||| || | ||||||||||| | || | ||||| ||||| ||||| |||| Sbjct 93306 GCAAAAATCAAACGTTGCTGGTCAGGAGGAATGCCCTCTTTGTCCTGGATCTTTGCTTTG 93365 Query 34905 ACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTC 34964 || | | || | || | ||| || || | || || || || || ||||||||| Sbjct 93366 ACATTTTCAATTGTGTCGGATGGCTCGACTTCAAGCGTGATCGTCTTGCCGGTGAGAGTC 93425 Query 34965 TTCACAAAGATCTGCAT 34981 || |||||||||||||| Sbjct 93426 TTGACAAAGATCTGCAT 93442 Score = 111 bits (122), Expect = 1e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||||||||| |||||||| || |||||||| ||||| || | || |||| || Sbjct 93462 ACCAAGTGAAGCGTGCTTTCCTTTTGAATGTTGTAGTCACTGAGTGTGCGACCATCCTCG 93521 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 || ||||||||||| || || || ||||||||||| | || | ||||||||||| Sbjct 93522 AGTTGTTTTCCGGCGAAAATGAGACGTTGCTGGTCAGGAGGAATACCCTCCTTGTCCTGG 93581 Query 34893 ATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTT 34952 || || || ||| | | || | || | || ||||| || | || || || || Sbjct 93582 ATTTTGGCCTTCACGTTTTCAATTGTATCGCTGGGTTCAACCTCAAGTGTGATAGTCTTC 93641 Query 34953 CCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 |||||||| ||||| || ||||||||||| Sbjct 93642 CCCGTGAGGGTCTTGACGAAGATCTGCAT 93670 Score = 102 bits (112), Expect = 5e-17 Identities = 137/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 |||||||||||||||||||| || || | || |||| || |||||||| || ||||| Sbjct 100016 TCTTTCTGAATGTTATAGTCAGATAGAGTACGACCATCTTCGAGCTGTTTACCAGCAAAA 100075 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 ||||| | || || || | || | || || ||||| ||| || |||||| | Sbjct 100076 ATTAGCCTCTGTTGATCAGGAGGGATTCCTTCTTTGTCCTGAATTTTGGCCTTGACGTTT 100135 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | || | |||| || || || |||| || || ||||| || ||||| |||||||| Sbjct 100136 TCAATGGTATCACTGGATTCTACCTCGAGTGTGATAGTTTTGCCTGTGAGCGTCTTCACG 100195 Query 34971 AAGATCTGCAT 34981 || |||||||| Sbjct 100196 AAAATCTGCAT 100206 Score = 98.7 bits (108), Expect = 6e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||||||| | || |||||||||||| || || || || ||| | ||| |||| || Sbjct 92175 ACCAAGTGCAGAGTTGATTCTTTCTGAATATTGTAATCGGACAGGGTACGTCCATCCTCG 92234 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 || |||||||| || ||||| || || ||||| || | || | || ||||| || | Sbjct 92235 AGTTGTTTTCCAGCGAATATAAGACGCTGCTGATCAGGGGGGATGCCTTCCTTATCCTGA 92294 Query 34893 ATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTT 34952 || || || ||| | | || | || || |||||| || | ||||||||||||| Sbjct 92295 ATTTTTGCCTTTACGTTTTCGATGGTATCCGAGGGCTCAACCTCAAGGGTTATGGTTTTT 92354 Query 34953 CCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 || || | ||||| || || || ||||| Sbjct 92355 CCGGTCAACGTCTTAACGAAAATTTGCAT 92383 Score = 95.1 bits (104), Expect = 8e-15 Identities = 136/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 |||||||||||||||||||| || || |||| | || || ||||| || || ||||| Sbjct 100244 TCTTTCTGAATGTTATAGTCTGATAGCGTTCGGCCGTCTTCAAGCTGCTTGCCAGCAAAG 100303 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 |||| | |||||| || |||| | || |||||||| |||||| || ||| | Sbjct 100304 ATTAACCTTTGCTGATCGGGCGGAATACCTTCCTTGTCTTGAATCTTTGCCTTAACGTTT 100363 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | || | || | | ||||| || | || || || ||||| || || || || || Sbjct 100364 TCGATTGTATCGCTAGGTTCAACCTCTAGAGTGATCGTCTTTCCGGTCAGCGTTTTTACG 100423 Query 34971 AAGATCTGCATA 34982 |||||||||||| Sbjct 100424 AAGATCTGCATA 100435 Score = 93.3 bits (102), Expect = 3e-14 Identities = 135/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || || ||||| ||||| || || ||| | || | || ||||| || || || ||||| Sbjct 93708 TCCTTTTGAATATTATAATCTGAGAGGGTACGGCCGTCTTCCAGTTGCTTGCCAGCAAAG 93767 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || |||||||| || | || | ||||| || || || || || || | Sbjct 93768 ATCAGACGTTGCTGATCCGGAGGGATGCCCTCTTTATCCTGGATTTTTGCCTTCACATTT 93827 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | || | || | || ||||| || | ||| ||||||||||| ||||| ||||||||| Sbjct 93828 TCAATTGTATCGCTGGGTTCAACTTCAAGGGTGATGGTTTTTCCAGTGAGCGTCTTCACA 93887 Query 34971 AAGATCTGCAT 34981 ||||||||||| Sbjct 93888 AAGATCTGCAT 93898 Score = 87.8 bits (96), Expect = 1e-12 Identities = 134/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 ||||| || || || ||||||||||| | ||| | || |||| ||||||||| ||||| Sbjct 100700 TCTTTTTGGATATTGTAGTCCGAAAGAGTACGTCCGTCTTCCAACTGTTTTCCAGCAAAG 100759 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 |||| || || |||||| | || | ||||||||||| |||||| ||||| | Sbjct 100760 ATTAATCTCTGTTGGTCTGGGGGAATACCCTCCTTGTCTTGAATCTTTGCCTTGACATTT 100819 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | || | || | || || || | ||| || || || || || || || ||||| Sbjct 100820 TCGATTGTATCTGAAGATTCCACCTCAAGGGTGATAGTCTTACCGGTTAGGGTTTTCACG 100879 Query 34971 AAGATCTGCAT 34981 || |||||||| Sbjct 100880 AAAATCTGCAT 100890 >seq19980 Length=299602 Score = 96.9 bits (106), Expect = 2e-15 Identities = 139/194 (72%), Gaps = 4/194 (2%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || || || || || ||||| ||||| | ||| |||| || || ||||| |||||||| Sbjct 144698 TCCTTTTGGATATTGTAGTCTGAAAGAGTACGTCCATCTTCTAGTTGTTTACCGGCAAAG 144639 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 ||||| | ||||| || | || | ||||| ||||| || ||| || || || Sbjct 144638 ATTAGCCTCTGCTGATCAGGGGGGATACCCTCTTTGTCTTGGATTTTCGCCTTAAC--AT 144581 Query 34911 GCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCA 34968 || || | ||| | ||||| || | ||| |||||||| || ||||||||||| | Sbjct 144580 TCTCAATTGTGTCAGAAGGTTCAACCTCCAGGGTGATGGTTTTCCCGGTGAGAGTCTTTA 144521 Query 34969 CAAAGATCTGCATA 34982 |||||||||||||| Sbjct 144520 CAAAGATCTGCATA 144507 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324552698060544