Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Varroa_20destructor_20[genbank_20GCA_5F000181155.2_202017-05-09] 20,448 sequences; 331,927,360 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq19563 277 2e-69 >seq19563 Length=274849 Score = 277 bits (306), Expect = 2e-69 Identities = 954/1495 (64%), Gaps = 40/1495 (3%) Strand=Plus/Plus Query 46974 TTTTCCACAGTAAACTTAATTGGATTACTCGCTGATTTTGTTCGTAAATAATACATACCA 47033 || || ||||| |||| ||| | | | || | || || || | || ||||| || Sbjct 229895 TTGTCTACAGTGAACTGAATCGCTTGAGCTGCAGGCTTCGTACGCAGGTAGTACATTCCG 229954 Query 47034 GTCTTTAAACCTAAACTCCATCCATAGAAATGCATACTAGTTAATTTAGAATAACTAGGT 47093 ||||| | ||| | |||| |||||||| ||||| ||||| || |||| | | | Sbjct 229955 GTCTTGAGACCAAGTTTCCAGCCATAGAAGTGCATCGAGGTTAACTTGCCATAATTGGTT 230014 Query 47094 TCTGAAATATGAATATTAAGAGATTGACTCTGATCAATAAATGCACCTCTATCAGCTGCC 47153 || | | ||| | ||| || |||||||||||||| || || || || | |||||| ||| Sbjct 230015 TCAGCTAGATGGACATTTAGTGATTGACTCTGATCGATGAAGGCTCCACGATCAGCAGCC 230074 Query 47154 ATATCTAAAATAACCCTTTGTGGTATCTCCCATACTGTTTTATAAATTTGTTTAATGTCT 47213 || | | ||| | ||||||||||||||||| || || | |||| || | Sbjct 230075 ATCTTGATGATATTTTTCTGTGGTATCTCCCATACGGTACGGTAGAGCAACTTAAGGTTT 230134 Query 47214 TCTGGGAGATTAGTATTTTGAATAGATCCTCCgttttctataattttgtttttta---at 47270 | ||| | | | | || | || || | | | | || ||| | | Sbjct 230135 TTTGGAATGTCAAGCCTCTGGACTGACCCATTATAAGCAACCAATTCGTTGCGCATCGAC 230194 Query 47271 tcatttgaccaaagttttcgttcagttaatgtttttaaAAGATGAGGATTAACAATTTGA 47330 ||||| ||||||| | ||| |||| ||| | |||||| |||| || | |||| Sbjct 230195 TCATT---CCAAAGTCCTAATTCTGTTAGATCTTTAAGTAGATGATGATTGACCACTTGA 230251 Query 47331 AATTCTCCAGATAGTACTCTACGGCTATATATATTACTTGTATATGGTTCTATAGATTCA 47390 || || || |||| |||| ||| || || || |||||||||||||| |||||| Sbjct 230252 AACTCACCTGATAACACTCGACGTGAGTACGCGTTGCTCGTATATGGTTCTATGGATTCA 230311 Query 47391 TTATTTCCAAAAATTTGAGCAGTTGATGCTGTAGGCATGGATGCAACTAATAAGCTATTT 47450 || || |||| ||| || || || ||||| || ||||| | ||| | || | |||||| Sbjct 230312 TTGTTGCCAAGAATCTGGGCGGTCGATGCAGTGGGCATAGGTGCCAATAGGAGGCTATTG 230371 Query 47451 CTTACTCCATATTTTTGTATCTNNNNNNNNNNNNGTTTCCAATCCCAAAGAT--CTGATG 47508 | || |||||||| |||| ||| ||||||||| ||| | Sbjct 230372 CGCACACCATATTTAGCAATCTTAGCTTTTAGCGCGGCCCAGTCCCAAAGAGAACTG--G 230429 Query 47509 GAACAACATTCCAAAAATCATATTGAAGAATTCCTTTACTTATCGGAGAACCATTATATG 47568 || || ||| | ||||||||| | || |||||| || || ||||| | || | Sbjct 230430 GAGTGACGCCCCACATATCATATTGCAATATACCTTTAGATACAGGCGAACCCTCGTAAG 230489 Query 47569 TTTTATAAGGACCGTATAGTTTAGCGAGTTCACAACTTGCTTCCAATGCACTATAATATA 47628 ||| ||| | || | | || || | ||||| ||||||||||| || | || || | Sbjct 230490 TTTCATACGTGCCTTCCACCTTCGCAATATCACAGCTTGCTTCCAAAGCGCCGTAGTAGA 230549 Query 47629 TTGTTTCAAATATTTTTATGTTTAGATTCCTTGCTTCTGATGATTCAAAAGGATANNNNN 47688 | || ||||| ||| | |||| || | | ||||||| | ||||| || | Sbjct 230550 TAGTCTCAAAGATTAGTTTGTTAAGTTCCATTGCTTCGGGACTGTCAAACGGTAAACGCA 230609 Query 47689 NNNNNNNNAATGTATCTGCCAATCCTTGAACACCAATACCAATTGGTCTATGAGTTTTAT 47748 || || || || | ||||| || ||||| ||||| |||| |||| ||||| Sbjct 230610 ATATGATGAAAGTGTCGGCAAGCCCTTGGACTCCAATTCCAATCGGTCGATGACGTTTAT 230669 Query 47749 TAGAAAACTCAGCTTCTGGTAATGGATATTTGTTTATATCTATAATTTTATTTAGANNNN 47808 | | ||| |||||||| | |||||| | ||| | ||| ||||| || || || Sbjct 230670 TGCTATGCTCTGCTTCTGGAACTGGATAGTAGTTAACATCGATAATCTTGTTGAGGTTTC 230729 Query 47809 NNNNNNNNNNNNNNACAATTTCTCTTAATTTATTAAAATCAAACTTGTTATTTATAACAA 47868 || ||| | | ||| ||| ||||||||| | | |||| Sbjct 230730 GTGTCACAACTTTAGTAACCTCTTTGAGTTTTCCAAAGTCAAACTTGCCTTCATTGACAA 230789 Query 47869 ACCTATTAAGTGCTATAGATGCTAGATTACATACAGCTACCTCATTTGGATTAGTATATT 47928 | | ||| ||||| | || || || || || || || | |||| ||| | ||| | Sbjct 230790 AGCGATTGAGTGCGAGTGACGCAAGGTTGCAAACTGCGATTTCATCAGGAGAGGAATACT 230849 Query 47929 GTATTATTTCAGCACATAGATTACCACATTTGATAGTACCCAAATTTTGATGATTATTNN 47988 |||||||| | ||||| |||| || ||||| || || | |||||| ||||| | Sbjct 230850 CGATTATTTCCGTACATAAATTAGAGCACTTGATTGTTCCAAGATTTTGCTGATTGCTCT 230909 Query 47989 NNTTGTTACATGCGTCCTTGTAAAGCATAAAAGGTGTTCCAGTTTCTATCTGAGATTCAA 48048 | |||||| || || || || | || ||||||| || ||||| || ||| ||| | Sbjct 230910 TTTGGTTACAAGCATCTTTATATAAGATGTAAGGTGTGCCTGTTTCAATTTGACTTTCGA 230969 Query 48049 TGATAGATTTCCAAACAGTCCTAGCCTTTAT-----------AACAGCTCTAGCTTTATT 48097 || | | ||||| || || | || | | || || || || | Sbjct 230970 GAATGGCATACCAAAGTTTCTGGGCTTCTACCTGGCGCATGAAGCGGCCCTCGCGTTCAT 231029 Query 48098 ATCATGTTCGTATTTAGTATAT--AACTTCTCAAATTCATCCCCATACACATTATCTAA- 48154 || || ||||| ||| | | |||| || |||||| ||| | || | Sbjct 231030 AT--TGCTCGTAG--AGTTTTTCGAACTCCTT-------TCCCCA---ACAGTCGCTCAG 231075 Query 48155 CCCAGGACATTCATTAGGACACATCAATGACCAATCCTCATCATTTTTTACTCTAGTCAT 48214 ||| ||||||| ||| | |||||||| ||||| | ||| | | |||| | ||| Sbjct 231076 CCCCGGACATTGATTGGAGCACATCAAAGACCACTGGCCATTTTCCTCGACTCGACGCAT 231135 Query 48215 AAATATATCTGGTATCCAAAGAGCTATAAATAA-ATCCCTAGTTCTTAGTTCTTCATTGC 48273 ||| | || |||| |||||| || ||| | || ||| | || ||| |||||||| | | Sbjct 231136 AAACAGGTCAGGTACCCAAAG-GCCATAGAAAAGATCACGAGCTCTGTGTTCTTCAATAC 231194 Query 48274 CACTATTCCTTTTAAGTTCAAGAAAGTCCATTATATCAGCATGCCATGGTTCTAAATATA 48333 || ||||| | | || || || || | ||||| |||||||||||||| ||||| | Sbjct 231195 CAGTATTCTTGCGCAAATCGAGGAATTCAAAGATATCGGCATGCCATGGTTCCAAATAGA 231254 Query 48334 TTGCCATTACACCTGGTCGTTTATTACCTCCTTGATCTATATATCTGGCAGTATTGTTAT 48393 | || | |||| || | ||||||||||| || || | ||||| || || || || | Sbjct 231255 TCGCAAAAGCACCCGGCCTCTTATTACCTCCCTGGTCAACATATCGCGCTGTGTTATTGT 231314 Query 48394 AAACTCTTAACATTGGGACAATACCATTTGATATACCATTGGTTCCCGAAATATA 48448 | || | | |||||| ||||| ||||| ||| | || || || || | ||||| Sbjct 231315 ACACACGAAGCATTGGCACAATGCCATTCGATGTTCCGTTAGTGCCTGCTATATA 231369 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 561965124990720