Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Varroa_20destructor_20[genbank_20GCA_5F000181155.2_202017-05-09]
20,448 sequences; 331,927,360 total letters
Query= NC_015960.1
Length=175699
Score E
Sequences producing significant alignments: (Bits) Value
seq19563 277 2e-69
>seq19563
Length=274849
Score = 277 bits (306), Expect = 2e-69
Identities = 954/1495 (64%), Gaps = 40/1495 (3%)
Strand=Plus/Plus
Query 46974 TTTTCCACAGTAAACTTAATTGGATTACTCGCTGATTTTGTTCGTAAATAATACATACCA 47033
|| || ||||| |||| ||| | | | || | || || || | || ||||| ||
Sbjct 229895 TTGTCTACAGTGAACTGAATCGCTTGAGCTGCAGGCTTCGTACGCAGGTAGTACATTCCG 229954
Query 47034 GTCTTTAAACCTAAACTCCATCCATAGAAATGCATACTAGTTAATTTAGAATAACTAGGT 47093
||||| | ||| | |||| |||||||| ||||| ||||| || |||| | | |
Sbjct 229955 GTCTTGAGACCAAGTTTCCAGCCATAGAAGTGCATCGAGGTTAACTTGCCATAATTGGTT 230014
Query 47094 TCTGAAATATGAATATTAAGAGATTGACTCTGATCAATAAATGCACCTCTATCAGCTGCC 47153
|| | | ||| | ||| || |||||||||||||| || || || || | |||||| |||
Sbjct 230015 TCAGCTAGATGGACATTTAGTGATTGACTCTGATCGATGAAGGCTCCACGATCAGCAGCC 230074
Query 47154 ATATCTAAAATAACCCTTTGTGGTATCTCCCATACTGTTTTATAAATTTGTTTAATGTCT 47213
|| | | ||| | ||||||||||||||||| || || | |||| || |
Sbjct 230075 ATCTTGATGATATTTTTCTGTGGTATCTCCCATACGGTACGGTAGAGCAACTTAAGGTTT 230134
Query 47214 TCTGGGAGATTAGTATTTTGAATAGATCCTCCgttttctataattttgtttttta---at 47270
| ||| | | | | || | || || | | | | || ||| | |
Sbjct 230135 TTTGGAATGTCAAGCCTCTGGACTGACCCATTATAAGCAACCAATTCGTTGCGCATCGAC 230194
Query 47271 tcatttgaccaaagttttcgttcagttaatgtttttaaAAGATGAGGATTAACAATTTGA 47330
||||| ||||||| | ||| |||| ||| | |||||| |||| || | ||||
Sbjct 230195 TCATT---CCAAAGTCCTAATTCTGTTAGATCTTTAAGTAGATGATGATTGACCACTTGA 230251
Query 47331 AATTCTCCAGATAGTACTCTACGGCTATATATATTACTTGTATATGGTTCTATAGATTCA 47390
|| || || |||| |||| ||| || || || |||||||||||||| ||||||
Sbjct 230252 AACTCACCTGATAACACTCGACGTGAGTACGCGTTGCTCGTATATGGTTCTATGGATTCA 230311
Query 47391 TTATTTCCAAAAATTTGAGCAGTTGATGCTGTAGGCATGGATGCAACTAATAAGCTATTT 47450
|| || |||| ||| || || || ||||| || ||||| | ||| | || | ||||||
Sbjct 230312 TTGTTGCCAAGAATCTGGGCGGTCGATGCAGTGGGCATAGGTGCCAATAGGAGGCTATTG 230371
Query 47451 CTTACTCCATATTTTTGTATCTNNNNNNNNNNNNGTTTCCAATCCCAAAGAT--CTGATG 47508
| || |||||||| |||| ||| ||||||||| ||| |
Sbjct 230372 CGCACACCATATTTAGCAATCTTAGCTTTTAGCGCGGCCCAGTCCCAAAGAGAACTG--G 230429
Query 47509 GAACAACATTCCAAAAATCATATTGAAGAATTCCTTTACTTATCGGAGAACCATTATATG 47568
|| || ||| | ||||||||| | || |||||| || || ||||| | || |
Sbjct 230430 GAGTGACGCCCCACATATCATATTGCAATATACCTTTAGATACAGGCGAACCCTCGTAAG 230489
Query 47569 TTTTATAAGGACCGTATAGTTTAGCGAGTTCACAACTTGCTTCCAATGCACTATAATATA 47628
||| ||| | || | | || || | ||||| ||||||||||| || | || || |
Sbjct 230490 TTTCATACGTGCCTTCCACCTTCGCAATATCACAGCTTGCTTCCAAAGCGCCGTAGTAGA 230549
Query 47629 TTGTTTCAAATATTTTTATGTTTAGATTCCTTGCTTCTGATGATTCAAAAGGATANNNNN 47688
| || ||||| ||| | |||| || | | ||||||| | ||||| || |
Sbjct 230550 TAGTCTCAAAGATTAGTTTGTTAAGTTCCATTGCTTCGGGACTGTCAAACGGTAAACGCA 230609
Query 47689 NNNNNNNNAATGTATCTGCCAATCCTTGAACACCAATACCAATTGGTCTATGAGTTTTAT 47748
|| || || || | ||||| || ||||| ||||| |||| |||| |||||
Sbjct 230610 ATATGATGAAAGTGTCGGCAAGCCCTTGGACTCCAATTCCAATCGGTCGATGACGTTTAT 230669
Query 47749 TAGAAAACTCAGCTTCTGGTAATGGATATTTGTTTATATCTATAATTTTATTTAGANNNN 47808
| | ||| |||||||| | |||||| | ||| | ||| ||||| || || ||
Sbjct 230670 TGCTATGCTCTGCTTCTGGAACTGGATAGTAGTTAACATCGATAATCTTGTTGAGGTTTC 230729
Query 47809 NNNNNNNNNNNNNNACAATTTCTCTTAATTTATTAAAATCAAACTTGTTATTTATAACAA 47868
|| ||| | | ||| ||| ||||||||| | | ||||
Sbjct 230730 GTGTCACAACTTTAGTAACCTCTTTGAGTTTTCCAAAGTCAAACTTGCCTTCATTGACAA 230789
Query 47869 ACCTATTAAGTGCTATAGATGCTAGATTACATACAGCTACCTCATTTGGATTAGTATATT 47928
| | ||| ||||| | || || || || || || || | |||| ||| | ||| |
Sbjct 230790 AGCGATTGAGTGCGAGTGACGCAAGGTTGCAAACTGCGATTTCATCAGGAGAGGAATACT 230849
Query 47929 GTATTATTTCAGCACATAGATTACCACATTTGATAGTACCCAAATTTTGATGATTATTNN 47988
|||||||| | ||||| |||| || ||||| || || | |||||| ||||| |
Sbjct 230850 CGATTATTTCCGTACATAAATTAGAGCACTTGATTGTTCCAAGATTTTGCTGATTGCTCT 230909
Query 47989 NNTTGTTACATGCGTCCTTGTAAAGCATAAAAGGTGTTCCAGTTTCTATCTGAGATTCAA 48048
| |||||| || || || || | || ||||||| || ||||| || ||| ||| |
Sbjct 230910 TTTGGTTACAAGCATCTTTATATAAGATGTAAGGTGTGCCTGTTTCAATTTGACTTTCGA 230969
Query 48049 TGATAGATTTCCAAACAGTCCTAGCCTTTAT-----------AACAGCTCTAGCTTTATT 48097
|| | | ||||| || || | || | | || || || || |
Sbjct 230970 GAATGGCATACCAAAGTTTCTGGGCTTCTACCTGGCGCATGAAGCGGCCCTCGCGTTCAT 231029
Query 48098 ATCATGTTCGTATTTAGTATAT--AACTTCTCAAATTCATCCCCATACACATTATCTAA- 48154
|| || ||||| ||| | | |||| || |||||| ||| | || |
Sbjct 231030 AT--TGCTCGTAG--AGTTTTTCGAACTCCTT-------TCCCCA---ACAGTCGCTCAG 231075
Query 48155 CCCAGGACATTCATTAGGACACATCAATGACCAATCCTCATCATTTTTTACTCTAGTCAT 48214
||| ||||||| ||| | |||||||| ||||| | ||| | | |||| | |||
Sbjct 231076 CCCCGGACATTGATTGGAGCACATCAAAGACCACTGGCCATTTTCCTCGACTCGACGCAT 231135
Query 48215 AAATATATCTGGTATCCAAAGAGCTATAAATAA-ATCCCTAGTTCTTAGTTCTTCATTGC 48273
||| | || |||| |||||| || ||| | || ||| | || ||| |||||||| | |
Sbjct 231136 AAACAGGTCAGGTACCCAAAG-GCCATAGAAAAGATCACGAGCTCTGTGTTCTTCAATAC 231194
Query 48274 CACTATTCCTTTTAAGTTCAAGAAAGTCCATTATATCAGCATGCCATGGTTCTAAATATA 48333
|| ||||| | | || || || || | ||||| |||||||||||||| ||||| |
Sbjct 231195 CAGTATTCTTGCGCAAATCGAGGAATTCAAAGATATCGGCATGCCATGGTTCCAAATAGA 231254
Query 48334 TTGCCATTACACCTGGTCGTTTATTACCTCCTTGATCTATATATCTGGCAGTATTGTTAT 48393
| || | |||| || | ||||||||||| || || | ||||| || || || || |
Sbjct 231255 TCGCAAAAGCACCCGGCCTCTTATTACCTCCCTGGTCAACATATCGCGCTGTGTTATTGT 231314
Query 48394 AAACTCTTAACATTGGGACAATACCATTTGATATACCATTGGTTCCCGAAATATA 48448
| || | | |||||| ||||| ||||| ||| | || || || || | |||||
Sbjct 231315 ACACACGAAGCATTGGCACAATGCCATTCGATGTTCCGTTAGTGCCTGCTATATA 231369
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 561965124990720
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |