Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Varroa_20destructor_20[genbank_20GCA_5F000181155.2_202017-05-09] 20,448 sequences; 331,927,360 total letters Query= NC_016653.1 Length=46586 Score E Sequences producing significant alignments: (Bits) Value seq12266 87.8 5e-13 >seq12266 Length=386 Score = 87.8 bits (96), Expect = 5e-13 Identities = 123/170 (72%), Gaps = 2/170 (1%) Strand=Plus/Minus Query 20025 GGCCACCCGGCCAGCGTCCGAGCTCCCGTAGTTTCCTGTGAGAAGCCAGAGT-CCGTTCT 20083 ||||||| | ||| | || ||||| ||| || ||| | |||| || ||| ||| Sbjct 184 GGCCACCGGTCCACCTGCCTAGCTCTTTTAGCTTTTGGTG-GCTGCCACGGTTCCGCTCT 126 Query 20084 CGGATCGCTTCCAGCTCTCCCTCTGCCACACCCGCGATGACATTGGCGATCAGACGGCCA 20143 |||||||| |||||||| || || || || || |||||||| | || | || || || Sbjct 125 CGGATCGCCTCCAGCTCGCCTTCGGCAACGCCAGCGATGACGCTTGCAACGAGCCGCCCT 66 Query 20144 ACCCAGGTGGAGAGGTCAATGTTGTCCGAGATACAGACGAGAGTCTTGTC 20193 |||||||| || ||||| |||||||| || | || || | |||||||| Sbjct 65 ACCCAGGTTGATAGGTCGATGTTGTCGGACACGCATACCAACGTCTTGTC 16 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 148917431086848