Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Varroa_20destructor_20[genbank_20GCA_5F000181155.2_202017-05-09]
20,448 sequences; 331,927,360 total letters
Query= NC_016762.1
Length=49135
Score E
Sequences producing significant alignments: (Bits) Value
seq4405 109 2e-19
seq19061 100 9e-17
>seq4405
Length=914
Score = 109 bits (120), Expect = 2e-19
Identities = 183/261 (70%), Gaps = 8/261 (3%)
Strand=Plus/Plus
Query 21258 AGGACGTCAGCGACATGTCCCGCCAGTGCAAGCTGCTGGCGATGGAGCTTGGTATCCCCG 21317
|||| ||| |||| | |||||| | |||||| ||||| | ||| || | | ||||
Sbjct 13 AGGAGGTCTCCGACTTCTCCCGCAATCTCAAGCTCCTGGCCAAGGAACTCGAGGTTCCCG 72
Query 21318 TGATCGTGCTGTCGCAGCTCAACCGCTCCCTGGAGCAGCGGCCGAACAAGCGACCGATGA 21377
|| ||| | | ||||| |||||| || ||||||||| | ||||||| ||| |
Sbjct 73 TGGTCGCGATCAGCCAGCTGAACCGCGGCCCGGAGCAGCGCACCGACAAGCGTCCGCAGG 132
Query 21378 TGTCGGACCTGCGCGAGTCCGGGGCGATCGAGCAGGACGCCGATGTGATCATGTTCGTGT 21437
| ||||||||||||||||| || || | |||||||||||||| || | || | |||
Sbjct 133 TCTCGGACCTGCGCGAGTCTGGATCGTTGGAGCAGGACGCCGACATGGTTATCCTGGTGC 192
Query 21438 ACCGC---GACGAGGTCTACCACCCGGA-TACCCAGTACCGCGGCGTGGCTGAGTTGATC 21493
||||| |||| | | | | ||||| |||| | |||| | ||| || | |||
Sbjct 193 ACCGCCCGGACGCGAT---CGAGCCGGACGACCCCCGA-GGCGGGGAGGCCGACCTCATC 248
Query 21494 ATCGCGAAGCACCGCAACGGC 21514
||| |||||||| ||||||
Sbjct 249 CTCGGCAAGCACCGTAACGGC 269
>seq19061
Length=15585
Score = 100 bits (110), Expect = 9e-17
Identities = 234/347 (67%), Gaps = 17/347 (5%)
Strand=Plus/Minus
Query 21178 CAAGCAGCGCCATGGGTTGAGCCTGCTGGTGGTGGACTACCTGCAGCTGCTGGAGAGCTC 21237
|||||||||||| | | | || | | ||||||||||| ||||| || | |||
Sbjct 10771 CAAGCAGCGCCACGCCCTCAAACTCGTCATCGTGGACTACCTCCAGCTCATG---ACCTC 10715
Query 21238 CGGCAA----GTCCACTCGCACCG--AGGACGTCAGCGACATGTCCCGCCAGTGCAAGCT 21291
|||||| ||| | || | || | || ||| || | ||||| ||| ||||||
Sbjct 10714 CGGCAAAAAAGTCGAGTCCCGCCAGCAAGAGGTCTCGGAGTTCTCCCGGCAGCTCAAGCT 10655
Query 21292 GCTGGCGATGGAGCTTGGTATCCCCGTGATCGTGCTGTCGCAGCTCAACCGCTCCCTGGA 21351
|| || | ||||| | | ||||| ||| ||| ||||||||||| | ||
Sbjct 10654 CCTCGCCAAAGAGCTCGAAGTGCCCGTCGTCGCGCTCAGCCAGCTCAACCGAGGGCCCGA 10595
Query 21352 GCAGCGGCCGAACAAGCGACCGATGATGTCGGACCTGCGCGAGTCCGGGGCGATCGAGCA 21411
|||||| | ||||||| ||| | | ||||||||||||||||| || || | |||||
Sbjct 10594 GCAGCGCACCGACAAGCGTCCGCAGGTCTCGGACCTGCGCGAGTCTGGATCGTTGGAGCA 10535
Query 21412 GGACGCCGATGTGATCATGTTCGTGTACCGC---GACGAGGTCTACCACCCGGA-TACCC 21467
||||||||| || | || | ||| ||||| |||| | | | | ||||| ||||
Sbjct 10534 GGACGCCGACATGGTTATCCTGGTGCACCGCCCGGACGCGAT---CGAGCCGGACGACCC 10478
Query 21468 AGTACCGCGGCGTGGCTGAGTTGATCATCGCGAAGCACCGCAACGGC 21514
| |||| | ||| || | ||| ||| |||||||| ||||||
Sbjct 10477 CCGA-GGCGGGGAGGCCGACCTCATCCTCGGCAAGCACCGTAACGGC 10432
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 157072250452672
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |