Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Varroa_20destructor_20[genbank_20GCA_5F000181155.2_202017-05-09] 20,448 sequences; 331,927,360 total letters Query= NC_016762.1 Length=49135 Score E Sequences producing significant alignments: (Bits) Value seq4405 109 2e-19 seq19061 100 9e-17 >seq4405 Length=914 Score = 109 bits (120), Expect = 2e-19 Identities = 183/261 (70%), Gaps = 8/261 (3%) Strand=Plus/Plus Query 21258 AGGACGTCAGCGACATGTCCCGCCAGTGCAAGCTGCTGGCGATGGAGCTTGGTATCCCCG 21317 |||| ||| |||| | |||||| | |||||| ||||| | ||| || | | |||| Sbjct 13 AGGAGGTCTCCGACTTCTCCCGCAATCTCAAGCTCCTGGCCAAGGAACTCGAGGTTCCCG 72 Query 21318 TGATCGTGCTGTCGCAGCTCAACCGCTCCCTGGAGCAGCGGCCGAACAAGCGACCGATGA 21377 || ||| | | ||||| |||||| || ||||||||| | ||||||| ||| | Sbjct 73 TGGTCGCGATCAGCCAGCTGAACCGCGGCCCGGAGCAGCGCACCGACAAGCGTCCGCAGG 132 Query 21378 TGTCGGACCTGCGCGAGTCCGGGGCGATCGAGCAGGACGCCGATGTGATCATGTTCGTGT 21437 | ||||||||||||||||| || || | |||||||||||||| || | || | ||| Sbjct 133 TCTCGGACCTGCGCGAGTCTGGATCGTTGGAGCAGGACGCCGACATGGTTATCCTGGTGC 192 Query 21438 ACCGC---GACGAGGTCTACCACCCGGA-TACCCAGTACCGCGGCGTGGCTGAGTTGATC 21493 ||||| |||| | | | | ||||| |||| | |||| | ||| || | ||| Sbjct 193 ACCGCCCGGACGCGAT---CGAGCCGGACGACCCCCGA-GGCGGGGAGGCCGACCTCATC 248 Query 21494 ATCGCGAAGCACCGCAACGGC 21514 ||| |||||||| |||||| Sbjct 249 CTCGGCAAGCACCGTAACGGC 269 >seq19061 Length=15585 Score = 100 bits (110), Expect = 9e-17 Identities = 234/347 (67%), Gaps = 17/347 (5%) Strand=Plus/Minus Query 21178 CAAGCAGCGCCATGGGTTGAGCCTGCTGGTGGTGGACTACCTGCAGCTGCTGGAGAGCTC 21237 |||||||||||| | | | || | | ||||||||||| ||||| || | ||| Sbjct 10771 CAAGCAGCGCCACGCCCTCAAACTCGTCATCGTGGACTACCTCCAGCTCATG---ACCTC 10715 Query 21238 CGGCAA----GTCCACTCGCACCG--AGGACGTCAGCGACATGTCCCGCCAGTGCAAGCT 21291 |||||| ||| | || | || | || ||| || | ||||| ||| |||||| Sbjct 10714 CGGCAAAAAAGTCGAGTCCCGCCAGCAAGAGGTCTCGGAGTTCTCCCGGCAGCTCAAGCT 10655 Query 21292 GCTGGCGATGGAGCTTGGTATCCCCGTGATCGTGCTGTCGCAGCTCAACCGCTCCCTGGA 21351 || || | ||||| | | ||||| ||| ||| ||||||||||| | || Sbjct 10654 CCTCGCCAAAGAGCTCGAAGTGCCCGTCGTCGCGCTCAGCCAGCTCAACCGAGGGCCCGA 10595 Query 21352 GCAGCGGCCGAACAAGCGACCGATGATGTCGGACCTGCGCGAGTCCGGGGCGATCGAGCA 21411 |||||| | ||||||| ||| | | ||||||||||||||||| || || | ||||| Sbjct 10594 GCAGCGCACCGACAAGCGTCCGCAGGTCTCGGACCTGCGCGAGTCTGGATCGTTGGAGCA 10535 Query 21412 GGACGCCGATGTGATCATGTTCGTGTACCGC---GACGAGGTCTACCACCCGGA-TACCC 21467 ||||||||| || | || | ||| ||||| |||| | | | | ||||| |||| Sbjct 10534 GGACGCCGACATGGTTATCCTGGTGCACCGCCCGGACGCGAT---CGAGCCGGACGACCC 10478 Query 21468 AGTACCGCGGCGTGGCTGAGTTGATCATCGCGAAGCACCGCAACGGC 21514 | |||| | ||| || | ||| ||| |||||||| |||||| Sbjct 10477 CCGA-GGCGGGGAGGCCGACCTCATCCTCGGCAAGCACCGTAACGGC 10432 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 157072250452672