Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Varroa_20destructor_20[genbank_20GCA_5F000181155.2_202017-05-09] 20,448 sequences; 331,927,360 total letters Query= NC_016765.1 Length=54024 Score E Sequences producing significant alignments: (Bits) Value seq19061 86.0 2e-12 seq17892 82.4 3e-11 >seq19061 Length=15585 Score = 86.0 bits (94), Expect = 2e-12 Identities = 89/117 (76%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 45539 CTCTGCCAGCTCAACCGAGGTTGCGAGTCTCGCCCCGACAAGCGTCCGGTCCTCAGCGAC 45598 ||| |||||||||||||||| |||| ||| |||||||||||||| || ||| Sbjct 10620 CTCAGCCAGCTCAACCGAGGGCCCGAGCAGCGCACCGACAAGCGTCCGCAGGTCTCGGAC 10561 Query 45599 CTGCGCGAGTCCGGCGCCATTGAGCAAGACGCCGACATCGTCATGTTCGTGTACCGC 45655 ||||||||||| || | | ||||| ||||||||||| || || | ||| ||||| Sbjct 10560 CTGCGCGAGTCTGGATCGTTGGAGCAGGACGCCGACATGGTTATCCTGGTGCACCGC 10504 >seq17892 Length=510 Score = 82.4 bits (90), Expect = 3e-11 Identities = 66/80 (83%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 38379 TCGCTGATGTCCTGCAGGCGCTCGACGCGAACAGCGGTGATCTCCAGCAGGATGCGGGAG 38438 ||||||||||| ||||| ||||||| ||| || |||| | || ||| ||||||||| Sbjct 427 TCGCTGATGTCGTGCAGCCGCTCGATGCGGACCTCGGTCACTTCGAGCGTGATGCGGGAC 486 Query 38439 GCCCAGCGGGGCATGTGGAT 38458 ||||| |||||||||||||| Sbjct 487 GCCCATCGGGGCATGTGGAT 506 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 172713251582336