Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Varroa_20destructor_20[genbank_20GCA_5F000181155.2_202017-05-09] 20,448 sequences; 331,927,360 total letters Query= NC_017940.1 Length=127732 Score E Sequences producing significant alignments: (Bits) Value seq17800 134 1e-26 >seq17800 Length=133550 Score = 134 bits (148), Expect = 1e-26 Identities = 297/443 (67%), Gaps = 8/443 (2%) Strand=Plus/Plus Query 29882 GAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCA 29941 |||| || |||| ||| || |||| ||| ||| || || || || || ||||| |||| Sbjct 12213 GAGCGATGATGTGCGTAAGCAGAGCGTAAGAGGCAATATTGAACGGAACACCGAGGCCCA 12272 Query 29942 TGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTCACGTAAAACTGAC 30001 |||| | | |||||| || ||||| |||| || || | | |||||||| ||| Sbjct 12273 TGTCGGCGCTGCGCTGGTACAGTTGACATGAGACTTCACCTTTGGCGACGTAAAATTGAG 12332 Query 30002 ACATGGTGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTTGGGGTTCCAGGCGCACA 30061 || ||| || || ||||| ||||| ||| || | ||||| || | | Sbjct 12333 CCAGACAGTGACAGGGCGGAAGCGCCATCTTTGGCAAATCCGAGACATTCCATGCCGATA 12392 Query 30062 CGATGATGCGCCTGTCTTCTGGGTTGTTCCTGA-TGAGGTCCACGGCGTTTTGC---AGC 30117 || || || | ||| | ||| ||| || | | || | | | | | || | | Sbjct 12393 GAATAATACGTCGGTCGTTTGGATTGCTCTTTAGTGTGCT----GATGATCTGAGCAATC 12448 Query 30118 TGATCCACCCCCATCCCCGAGTAGTCTGCCCTCATGTCCGTGTACTCTGCTCCGAAATGC 30177 ||||| || ||| || ||| || || ||| | |||||||| || |||||||| Sbjct 12449 TGATCAACTCCCTGGTTCGTGTAATCGGCATGCATATTTGTGTACTCAGCACCGAAATGG 12508 Query 30178 CTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAGCCCCTC 30237 | ||||||||| |||||||| || || | || || ||||||||| || || Sbjct 12509 CGCCACTGGAAGCCGTACACGGGGCCTAAATCGCCTTCTTCCCTGGCGGTAAAACCAAGG 12568 Query 30238 TTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCGGAGAGC 30297 |||||||||| || | ||||||||||| ||||| || ||||| || ||||| || ||| Sbjct 12569 CTGTCCAAAAATTCACGAGAACCGTTGGCATCCCAAATTTTTACTCCTTTCTCCGACAGC 12628 Query 30298 TCTTTGGAGTTTGTGGACCCTCT 30320 || |||| ||| || || ||||| Sbjct 12629 TCCTTGGCGTTGGTAGAGCCTCT 12651 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 408515768407904