Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Varroa_20destructor_20[genbank_20GCA_5F000181155.2_202017-05-09]
20,448 sequences; 331,927,360 total letters
Query= NC_017940.1
Length=127732
Score E
Sequences producing significant alignments: (Bits) Value
seq17800 134 1e-26
>seq17800
Length=133550
Score = 134 bits (148), Expect = 1e-26
Identities = 297/443 (67%), Gaps = 8/443 (2%)
Strand=Plus/Plus
Query 29882 GAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCA 29941
|||| || |||| ||| || |||| ||| ||| || || || || || ||||| ||||
Sbjct 12213 GAGCGATGATGTGCGTAAGCAGAGCGTAAGAGGCAATATTGAACGGAACACCGAGGCCCA 12272
Query 29942 TGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTCACGTAAAACTGAC 30001
|||| | | |||||| || ||||| |||| || || | | |||||||| |||
Sbjct 12273 TGTCGGCGCTGCGCTGGTACAGTTGACATGAGACTTCACCTTTGGCGACGTAAAATTGAG 12332
Query 30002 ACATGGTGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTTGGGGTTCCAGGCGCACA 30061
|| ||| || || ||||| ||||| ||| || | ||||| || | |
Sbjct 12333 CCAGACAGTGACAGGGCGGAAGCGCCATCTTTGGCAAATCCGAGACATTCCATGCCGATA 12392
Query 30062 CGATGATGCGCCTGTCTTCTGGGTTGTTCCTGA-TGAGGTCCACGGCGTTTTGC---AGC 30117
|| || || | ||| | ||| ||| || | | || | | | | | || | |
Sbjct 12393 GAATAATACGTCGGTCGTTTGGATTGCTCTTTAGTGTGCT----GATGATCTGAGCAATC 12448
Query 30118 TGATCCACCCCCATCCCCGAGTAGTCTGCCCTCATGTCCGTGTACTCTGCTCCGAAATGC 30177
||||| || ||| || ||| || || ||| | |||||||| || ||||||||
Sbjct 12449 TGATCAACTCCCTGGTTCGTGTAATCGGCATGCATATTTGTGTACTCAGCACCGAAATGG 12508
Query 30178 CTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAGCCCCTC 30237
| ||||||||| |||||||| || || | || || ||||||||| || ||
Sbjct 12509 CGCCACTGGAAGCCGTACACGGGGCCTAAATCGCCTTCTTCCCTGGCGGTAAAACCAAGG 12568
Query 30238 TTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCGGAGAGC 30297
|||||||||| || | ||||||||||| ||||| || ||||| || ||||| || |||
Sbjct 12569 CTGTCCAAAAATTCACGAGAACCGTTGGCATCCCAAATTTTTACTCCTTTCTCCGACAGC 12628
Query 30298 TCTTTGGAGTTTGTGGACCCTCT 30320
|| |||| ||| || || |||||
Sbjct 12629 TCCTTGGCGTTGGTAGAGCCTCT 12651
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 408515768407904
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |