Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Varroa_20destructor_20[genbank_20GCA_5F000181155.2_202017-05-09] 20,448 sequences; 331,927,360 total letters Query= NC_018874.1 Length=211518 Score E Sequences producing significant alignments: (Bits) Value seq19977 113 6e-20 >seq19977 Length=241269 Score = 113 bits (124), Expect = 6e-20 Identities = 463/719 (64%), Gaps = 12/719 (2%) Strand=Plus/Minus Query 197023 AGATCCTCGTCGCTAAAGCCCGTACCGATCTTACAAATGGATTCGTACATCTGGTTGTCG 197082 || ||||| || | ||||| ||||||||||| || | |||| | || || | | || Sbjct 186923 AGCTCCTCCTCTTTGAAGCCTGTACCGATCTTGCATAGCGATTGGAACTCCTCGCTCTCT 186864 Query 197083 GGATTGTAACAGGCGAGTAAGAAAGCGCCGTAGGTTCCCGTTCTCTTTCCCACCCCGTTG 197142 |||| ||||| || || | ||| | || || ||||| |||| ||| || || || Sbjct 186863 GGATCATAACATGCCAGCAGGAATCCCCCATACGTTCCTGTTCGCTTGCCTTTTCCCTTC 186804 Query 197143 AAGCCTCCGATAACCACCAGATCCAGAGTGTCGCACACCCCTTCCATGTAATCTTTCTTC 197202 | || |||||||| || | || | || || | || ||||| | |||||| ||||| Sbjct 186803 CAACCCCCGATAACAACGACGTCGATCGTATCTCCTACACCTTCTAGGTAATCCTTCTTT 186744 Query 197203 AGTTTGAGCCAGCTTCTAGATCTCTTGGCAATCTCGTAGGTTGCGT--TTACGTCCAGGG 197260 || || |||||| | || | || || |||||||| || || | ||| || || | Sbjct 186743 AGCTTAAGCCAGTTGTGGGAACGTTTTGCTATCTCGTAAGTCGCTTCCTTA--TCAAGTG 186686 Query 197261 TCTTGATCATCAATCCCTCGCAATCTTCCTTCACGGCCTTGTTCATGAAAGT-TTGAATG 197319 | || | |||||| |||||||| | |||| || || || ||| || | | |||||| Sbjct 186685 TTTTTACCATCAAACCCTCGCAGTTGCCCTTAAC-GCTTTCTTCTAGATATTCTTGAATA 186627 Query 197320 TCTTCCGGTTTGTTAGACATCATATCTCGC-GCGAAGATAAATTGTCCCTCCACCTCCGT 197378 || || || || | |||| | || || || ||| | || || | || ||| Sbjct 186626 TCATCAACGTT-TTCAAGATCAGCGTTGGCTGCAAACCCAAACTCGCCTTCGA-CTTCGT 186569 Query 197379 AAAACAACTCCTCATAAGTTCC--CTCCTCTCTCTGAAGCTCTTGTTGACCTGAGACACT 197436 || || ||| ||| | |||||||| | ||| | || || | || Sbjct 186568 GGAAATGCT-CTCTTAACAAACGTCTCCTCTCGCGGAAAGGTTCCTTCACAAGCGATTTA 186510 Query 197437 CCGTTCATGTACAACACGTCAAAAGCAAAGACGCACACCTGGACGGTTATCTCTTCTTCC 197496 || || | ||||| | ||| |||||||| ||| | ||||| ||| | || || | | Sbjct 186509 CCATTAAGGTACAGTAAGTCGAAAGCAAACACGTAAACCTGAACGATAATTTCACCATGA 186450 Query 197497 TTGACATCTTTACGTTTTCTGGTCGCCAGCTTTTGAAAGGGAAGGATCTGCTTCTTCTCA 197556 | ||||| || ||||| | ||| |||| || ||||||||||| ||||| ||| Sbjct 186449 TCAACATCCTTTTTCTTTCTATGCATCAGTGTTTGGAAAGGAAGGATCTGTTTCTTTTCA 186390 Query 197557 ACGTCCCAAGCAACTGCCTCAGCGTCCAAGATGAAAGACTTCACTCCCTCGTTGATCGAT 197616 || | || || ||||| | |||| ||| ||| | ||||| || || || Sbjct 186389 CGATCATACGCCACGGCCTCGGAATCCATGATAAAATCAATGACTCCTTCTTTTATATTC 186330 Query 197617 TGGGGAAGCCTATTGATTATGTCGGGGTACTTCTCGGTGTTATTTTCAGAGTTGCGGCTA 197676 | || || | || || ||||| |||||| || || ||||| || | | | Sbjct 186329 TTAATAATCCGCTGAATGATATCGGGATACTTCGTCGTATTGTTTTCCTGATTTCTGGAA 186270 Query 197677 AAAATTCTAATCTTCCCTCCCTCCATGTAGTGAATCTGAGCCCTCTCTCCGTCATACTT 197735 || ||| | || ||||||||||| || ||||| || | ||| || || ||||| Sbjct 186269 AATATTGACACTTTTCCTCCCTCCATCATATGGATCTGCGCACGCTCACCATCGTACTT 186211 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 676556627914240