Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Varroa_20destructor_20[genbank_20GCA_5F000181155.2_202017-05-09] 20,448 sequences; 331,927,360 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq7231 116 3e-21 seq19980 109 4e-19 >seq7231 Length=219762 Score = 116 bits (128), Expect = 3e-21 Identities = 148/204 (73%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 48563 ATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTG 48622 ||| |||||| ||||||||| |||||||| || || ||| | || |||| |||||||| Sbjct 100687 ATGGAGCGTGGACTCTTTTTGGATATTGTAGTCCGAAAGAGTACGTCCGTCTTCCAACTG 100746 Query 48623 CTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTT 48682 || || ||||| || | || |||||| || | ||||| ||||||||||| |||||| Sbjct 100747 TTTTCCAGCAAAGATTAATCTCTGTTGGTCTGGGGGAATACCCTCCTTGTCTTGAATCTT 100806 Query 48683 TTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGT 48742 | || ||| | | | ||||| | |||||||| | || || || || || || Sbjct 100807 TGCCTTGACATTTTCGATTGTATCTGAAGATTCCACCTCAAGGGTGATAGTCTTACCGGT 100866 Query 48743 CAAAGTTTTTACAAAAATCTGCAT 48766 | ||||| || ||||||||||| Sbjct 100867 TAGGGTTTTCACGAAAATCTGCAT 100890 Score = 91.5 bits (100), Expect = 1e-13 Identities = 151/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || |||| |||||| || || || ||||| |||||||||||||| || || | || Sbjct 92166 AGGCGCAGCACCAAGTGCAGAGTTGATTCTTTCTGAATATTGTAATCGGACAGGGTACGT 92225 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || || | || || || || ||||| || ||||| ||||| | ||| | ||| ||| Sbjct 92226 CCATCCTCGAGTTGTTTTCCAGCGAATATAAGACGCTGCTGATCAGGGGGGATGCCTTCC 92285 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 || || ||| ||| ||||| | | | || || | ||| ||||| | || Sbjct 92286 TTATCCTGAATTTTTGCCTTTACGTTTTCGATGGTATCCGAGGGCTCAACCTCAAGGGTT 92345 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || |||||||| ||||| || || || ||||| ||||| Sbjct 92346 ATGGTTTTTCCGGTCAACGTCTTAACGAAAATTTGCAT 92383 Score = 91.5 bits (100), Expect = 1e-13 Identities = 160/231 (69%), Gaps = 8/231 (3%) Strand=Plus/Plus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 ||||| | || || | ||| | ||| | ||||| || || || || ||||| || ||| Sbjct 92800 CCGCCACGGAGACGGAGCACGAGATGCAAGGTGCTTTCCTTCTGGATGTTGTAGTCCGAT 92859 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 || | ||| |||| || | || || || ||||| || || |||||||| || | ||| Sbjct 92860 AGCGTGCGACCGTCCTCGAGTTGTTTTCCAGCAAAGATGAGACGCTGTTGGTCAGGCGGA 92919 Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGC----CTC 48715 | |||||| ||||| ||| || |||||| | | || | || ||| ||| Sbjct 92920 ATGCCCTCTTTGTCTTGAATTTTCGCTTTTAC-GTTCTCAATGG---TGTCGCTTGGCTC 92975 Query 48716 CACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || | || || ||||||||||| | ||||| |||||||||||||| Sbjct 92976 AACTTCAAGTGTTATTGTTTTTCCCGTAAGGGTTTTCACAAAAATCTGCAT 93026 Score = 84.2 bits (92), Expect = 2e-11 Identities = 133/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 48576 TCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAAT 48635 ||||| || || ||||| || || || ||| | |||| || | ||| ||||| ||||| Sbjct 92608 TCTTTCTGGATGTTGTAGTCTGACAGTGTTCTACCGTCCTCGAGCTGTTTACCCGCAAAG 92667 Query 48636 ATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAA 48695 |||| |||||| || || | || | || |||||||| ||| || || || Sbjct 92668 ATCAATCGCTGCTGGTCAGGCGGGATACCTTCCTTGTCCTGAATTTTCGCCTTCACGTTC 92727 Query 48696 CCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACA 48755 | | | ||||| | || ||||||| ||||| || || ||||||||||| ||||| Sbjct 92728 TCGATGGTATCTGAGGGTTCGACCTCCAAGGTAATGGTCTTCCCCGTCAAAGTCTTTACG 92787 Query 48756 AAAATCTGCAT 48766 || || ||||| Sbjct 92788 AAGATTTGCAT 92798 Score = 84.2 bits (92), Expect = 2e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 48563 ATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTG 48622 ||| || ||| ||||||||| |||||||| || || || | ||| |||| || | || Sbjct 100459 ATGGAGGGTGGACTCTTTTTGGATATTGTAGTCTGAAAGGGTACGACCGTCTTCAAGTTG 100518 Query 48623 CTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTT 48682 ||||||||||| |||| | ||||||||| | || | || || ||||| || || Sbjct 100519 TTTACCGGCAAAGATCAACCTCTGTTGATCTGGAGGGATACCTTCTTTGTCTTGGATTTT 100578 Query 48683 TTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGT 48742 ||| ||| | | | || || | ||| || |||| ||||| || ||||| || Sbjct 100579 CGCTTTAACATTCTCAATTGTGTCAGAGGGCTCAACTTCCAGGGTAATAGTCTTTCCGGT 100638 Query 48743 CAAAGTTTTTACAAAAATCTGCAT 48766 | ||||| || || |||||||| Sbjct 100639 AAGGGTTTTCACGAAGATCTGCAT 100662 Score = 82.4 bits (90), Expect = 6e-11 Identities = 93/125 (74%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 |||||||| || | ||| || || ||| ||||||||||| ||||| || || | || Sbjct 93681 AGCCGCAAGACGAGATGCAGTGTCGACTCCTTTTGAATATTATAATCTGAGAGGGTACGG 93740 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 |||| |||| ||||| || ||||| ||||| || || ||||||| || | |||||| Sbjct 93741 CCGTCTTCCAGTTGCTTGCCAGCAAAGATCAGACGTTGCTGATCCGGAGGGATGCCCTCT 93800 Query 48669 TTGTC 48673 || || Sbjct 93801 TTATC 93805 >seq19980 Length=299602 Score = 109 bits (120), Expect = 4e-19 Identities = 155/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || ||||| || | ||| || || ||||| || || ||||||||||| ||| | || Sbjct 144497 AGACGCAAGACAAGATGAAGGGTCGATTCTTTCTGGATGTTGTAATCAGAAAGAGTACGT 144438 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 |||| |||||||| ||||| ||||| || | | ||| || || | ||||| |||||| Sbjct 144437 CCGTCTTCCAACTGTTTACCAGCAAAGATTAACCTCTGCTGGTCTGGGGGAATCCCCTCC 144378 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 || || |||||| || ||| | | | || || | ||||||||| | || Sbjct 144377 TTATCTTGAATCTTCGCCTTGACATTTTCGATTGTATCAGAAGACTCCACCTCAAGGGTG 144318 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || ||||| || |||||||| |||||||| ||||| Sbjct 144317 ATAGTCTTTCCGGTTAAAGTTTTCACAAAAATTTGCAT 144280 Score = 96.9 bits (106), Expect = 3e-15 Identities = 143/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 48564 TGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGC 48623 || || ||| ||| |||||||||||||| || || || | || | || || | |||| Sbjct 144938 TGGAGGGTGGACTCCTTTTGAATATTGTAGTCCGAAAGGGTGCGTCCATCTTCAAGCTGC 144879 Query 48624 TTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTT 48683 || |||||||| |||| || ||||||||| | ||||| || |||||||| |||||| Sbjct 144878 TTTCCGGCAAAGATCAATCTCTGTTGATCGGGGGGAATTCCTTCCTTGTCTTGAATCTTG 144819 Query 48684 TGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTC 48743 ||||| | | | || || | |||||| |||| || || || || || || Sbjct 144818 GCCTTTACGTTCTCAATTGTATCAGAAGGCTCCACTTCCAAGGTGATGGTCTTCCCAGTA 144759 Query 48744 AAAGTTTTTACAAAAATCTGCAT 48766 | ||||| || ||||| ||||| Sbjct 144758 AGGGTTTTGACGAAAATTTGCAT 144736 Score = 86.0 bits (94), Expect = 5e-12 Identities = 149/214 (70%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 48554 CAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTC 48613 || ||||| ||| || || |||||||||||| ||||| || || || | ||| | || Sbjct 145176 CAGCACCAGATGAAGGGTAGACTCTTTTTGAATGTTGTAGTCGGAGAGCGTGCGACCATC 145117 Query 48614 GTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTC 48673 || | ||| || || || || |||| | |||||||| | ||||| || |||||||| Sbjct 145116 CTCGAGCTGTTTGCCTGCGAAAATCAACCTTTGTTGATCGGGGGGAATTCCTTCCTTGTC 145057 Query 48674 GCTAATCTTTTGTTTTACAGAAC-CCACAGACTCTGACGCCTCCACCTCCACCGTAATCG 48732 ||| ||| | |||| | | | | | || | ||| || || | || |||| Sbjct 145056 TTGAAT-TTTGGCTTTAACGTTCTCAATCGTATCGCTTGGCTCGACTTCAAGAGTGATCG 144998 Query 48733 TTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 ||||||| || | ||||| |||||||||||||| Sbjct 144997 TTTTTCCGGTAAGCGTTTTAACAAAAATCTGCAT 144964 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380842666540704