Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Varroa_20destructor_20[genbank_20GCA_5F000181155.2_202017-05-09]
20,448 sequences; 331,927,360 total letters
Query= NC_019491.1
Length=291144
Score E
Sequences producing significant alignments: (Bits) Value
seq19464 149 1e-30
>seq19464
Length=44290
Score = 149 bits (164), Expect = 1e-30
Identities = 200/278 (72%), Gaps = 3/278 (1%)
Strand=Plus/Plus
Query 48098 GGTTTGTTGCGCAGGTGCTTGGCATAGAGCATGCAGGCAAAGTCCCTGTGCAAGCCTTCG 48157
||||||||| |||||| ||| | | || ||||| ||||| |||||| ||||||
Sbjct 12296 GGTTTGTTGATCAGGTGTTTGA---ACATCAGACAGGCGAAGTCTGTGTGCATACCTTCG 12352
Query 48158 TCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAGGCATGACCCCCCTCTGTTTGAGC 48217
|| || ||||||| | ||| |||| ||| |||||||||| || | || ||| |||
Sbjct 12353 TCACGTGAGATGAGCTCATTGCTGAAGGTGAGGCCAGGCATGATACCTCGCTTTTTCAGC 12412
Query 48218 CAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGCCCTCCACTGCCGCGAACGCGGTG 48277
|||||||| || || || | || ||| || ||||| || ||||| ||||| ||
Sbjct 12413 CAGAAAATAGCGGCAAACGCCCCGCTGAAAAAAATGCCTTCGACTGCAGCGAATGCCACA 12472
Query 48278 AGCCTCTCTCCGAAAGAAGCGTTCTTGTCTGAGATCCAGGAAAGCGCCCAGTCTGCCTTC 48337
| | ||| ||| | | ||| | || || | |||||| | ||||| || ||||||
Sbjct 12473 ACACGCTCACCGTACGCAGCCTCCTCGTTAGCGATCCACTCTAAGGCCCAATCAGCCTTC 12532
Query 48338 TTCTTGATGCATGGCATCGTCTCTATGGCCCGGAAGAG 48375
||||| ||||||||||| ||||| || || ||||||||
Sbjct 12533 TTCTTAATGCATGGCATTGTCTCAATTGCGCGGAAGAG 12570
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 931294700216320
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |