Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Varroa_20destructor_20[genbank_20GCA_5F000181155.2_202017-05-09] 20,448 sequences; 331,927,360 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq19464 149 1e-30 >seq19464 Length=44290 Score = 149 bits (164), Expect = 1e-30 Identities = 200/278 (72%), Gaps = 3/278 (1%) Strand=Plus/Plus Query 48098 GGTTTGTTGCGCAGGTGCTTGGCATAGAGCATGCAGGCAAAGTCCCTGTGCAAGCCTTCG 48157 ||||||||| |||||| ||| | | || ||||| ||||| |||||| |||||| Sbjct 12296 GGTTTGTTGATCAGGTGTTTGA---ACATCAGACAGGCGAAGTCTGTGTGCATACCTTCG 12352 Query 48158 TCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAGGCATGACCCCCCTCTGTTTGAGC 48217 || || ||||||| | ||| |||| ||| |||||||||| || | || ||| ||| Sbjct 12353 TCACGTGAGATGAGCTCATTGCTGAAGGTGAGGCCAGGCATGATACCTCGCTTTTTCAGC 12412 Query 48218 CAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGCCCTCCACTGCCGCGAACGCGGTG 48277 |||||||| || || || | || ||| || ||||| || ||||| ||||| || Sbjct 12413 CAGAAAATAGCGGCAAACGCCCCGCTGAAAAAAATGCCTTCGACTGCAGCGAATGCCACA 12472 Query 48278 AGCCTCTCTCCGAAAGAAGCGTTCTTGTCTGAGATCCAGGAAAGCGCCCAGTCTGCCTTC 48337 | | ||| ||| | | ||| | || || | |||||| | ||||| || |||||| Sbjct 12473 ACACGCTCACCGTACGCAGCCTCCTCGTTAGCGATCCACTCTAAGGCCCAATCAGCCTTC 12532 Query 48338 TTCTTGATGCATGGCATCGTCTCTATGGCCCGGAAGAG 48375 ||||| ||||||||||| ||||| || || |||||||| Sbjct 12533 TTCTTAATGCATGGCATTGTCTCAATTGCGCGGAAGAG 12570 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931294700216320