Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Varroa_20destructor_20[genbank_20GCA_5F000181155.2_202017-05-09]
20,448 sequences; 331,927,360 total letters
Query= NC_019495.1
Length=290304
Score E
Sequences producing significant alignments: (Bits) Value
seq19464 143 5e-29
>seq19464
Length=44290
Score = 143 bits (158), Expect = 5e-29
Identities = 411/637 (65%), Gaps = 7/637 (1%)
Strand=Plus/Minus
Query 25687 TGTTTCTACGGTTTCCAGATGGCCATCGAAAATGTGCACTCTGAGGTGTATGCCAAGCTT 25746
|||||||||||||| ||||| || |||||| | || || || ||||| | ||
Sbjct 12669 TGTTTCTACGGTTTTCAGATAATGATGGAAAATATTCATTCAGAAATGTATTCTCTTCTG 12610
Query 25747 CTGATGACGTACATTACAGACGTCGCCGAGAGAGATCGGCTGTTTGGTGCCATCGAGCAC 25806
|| | || ||||| || || | | || | ||||| || || | || || |||
Sbjct 12609 CTAAACACATACATCACCGAGTCCACGGAACGTGATCGACTCTTCCGCGCAATTGAGACA 12550
Query 25807 ATACCCAGCATCAAGAGGAAGGCGCGGTGGGCCATGAAGTGGATCAACAGCCAGAGCGCT 25866
|| || |||| |||| |||||| |||||| | |||||||| | | || |||
Sbjct 12549 ATGCCATGCATTAAGAAGAAGGCTGATTGGGCCTTAGAGTGGATCGCTAACGAGGAGGCT 12490
Query 25867 ACGTTTGGCGAGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCG 25926
||| || ||||| | || || || ||||| || || ||||| ||||||||||| ||
Sbjct 12489 GCGTACGGTGAGCGTGTTGTGGCATTCGCTGCAGTCGAAGGCATTTTTTTCAGCGGGGCG 12430
Query 25927 TTTGCGGCCATCTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAAC 25986
||||| || || |||||||| || || || | |||||| || || ||| |||
Sbjct 12429 TTTGCCGCTATTTTCTGGCTGAAAAAGCGAGGTATCATGCCTGGCCTCACCTTCAGCAAT 12370
Query 25987 GAGCTCATCAGCAGGGACGAGGGTCTCCACAGAGATTTTGCCTGCCTGCTCTACACGGGC 26046
||||||||| | ||||| ||| | |||| ||| || ||||| ||| | | ||
Sbjct 12369 GAGCTCATCTCACGTGACGAAGGTATGCACACAGACTTCGCCTGTCTGATGTTCA---AA 12313
Query 26047 CACTTGCTCCACAAACCTTCTCAAGAGACCGTCTACAGTATCATCAAAGAGGCTGTGGAG 26106
||| || || ||||||| ||| | |||| ||||| || || ||||| |
Sbjct 12312 CACCTGATCAACAAACCAAGCGAAGCGCGAATCTATCAAATCATTAAGGACGCTGTTGCC 12253
Query 26107 ATCGAGAAGGAGTTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGGCATGAACAACAGA 26166
||||| | || |||| |||| |||||| |
Sbjct 12252 ATCGAACAAGAATTTCTCACTGAAGCATTACCTGTCGCTATGTTGGGTATGAACTGCGAT 12193
Query 26167 CTCATGAGCCAATACATTGAGTATGTGGCCGACCATCTGCTGTGCCAGCTGGGACTCGCC 26226
|| |||| ||||||||||| || || || | |||||| | |||| ||| |||
Sbjct 12192 CTGATGAAGAGATACATTGAGTTCGTTGCTGATCGTCTGCTCATCGAGCT-CAACT-GCC 12135
Query 26227 AGACTCTACAGTA--CGCCTAACCCGTTCGACTTTATGGAAAACATATCGTTGGAAGGGA 26284
||| ||| | | | | || ||||||||||||||||| | || || | ||||| |
Sbjct 12134 AGAAGCTATGGAAGTCCACGAATCCGTTCGACTTTATGGAGCAAATTTCCCTCGAAGGCA 12075
Query 26285 AGACCAACTTCTTTGAAAAGAGGGTCGGCGACTATCA 26321
| || || ||||||||||| | || || || || ||
Sbjct 12074 AAACGAATTTCTTTGAAAAACGCGTTGGTGAATACCA 12038
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 928607387269120
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |