Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Varroa_20destructor_20[genbank_20GCA_5F000181155.2_202017-05-09] 20,448 sequences; 331,927,360 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq19464 143 5e-29 >seq19464 Length=44290 Score = 143 bits (158), Expect = 5e-29 Identities = 411/637 (65%), Gaps = 7/637 (1%) Strand=Plus/Minus Query 25687 TGTTTCTACGGTTTCCAGATGGCCATCGAAAATGTGCACTCTGAGGTGTATGCCAAGCTT 25746 |||||||||||||| ||||| || |||||| | || || || ||||| | || Sbjct 12669 TGTTTCTACGGTTTTCAGATAATGATGGAAAATATTCATTCAGAAATGTATTCTCTTCTG 12610 Query 25747 CTGATGACGTACATTACAGACGTCGCCGAGAGAGATCGGCTGTTTGGTGCCATCGAGCAC 25806 || | || ||||| || || | | || | ||||| || || | || || ||| Sbjct 12609 CTAAACACATACATCACCGAGTCCACGGAACGTGATCGACTCTTCCGCGCAATTGAGACA 12550 Query 25807 ATACCCAGCATCAAGAGGAAGGCGCGGTGGGCCATGAAGTGGATCAACAGCCAGAGCGCT 25866 || || |||| |||| |||||| |||||| | |||||||| | | || ||| Sbjct 12549 ATGCCATGCATTAAGAAGAAGGCTGATTGGGCCTTAGAGTGGATCGCTAACGAGGAGGCT 12490 Query 25867 ACGTTTGGCGAGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCG 25926 ||| || ||||| | || || || ||||| || || ||||| ||||||||||| || Sbjct 12489 GCGTACGGTGAGCGTGTTGTGGCATTCGCTGCAGTCGAAGGCATTTTTTTCAGCGGGGCG 12430 Query 25927 TTTGCGGCCATCTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAAC 25986 ||||| || || |||||||| || || || | |||||| || || ||| ||| Sbjct 12429 TTTGCCGCTATTTTCTGGCTGAAAAAGCGAGGTATCATGCCTGGCCTCACCTTCAGCAAT 12370 Query 25987 GAGCTCATCAGCAGGGACGAGGGTCTCCACAGAGATTTTGCCTGCCTGCTCTACACGGGC 26046 ||||||||| | ||||| ||| | |||| ||| || ||||| ||| | | || Sbjct 12369 GAGCTCATCTCACGTGACGAAGGTATGCACACAGACTTCGCCTGTCTGATGTTCA---AA 12313 Query 26047 CACTTGCTCCACAAACCTTCTCAAGAGACCGTCTACAGTATCATCAAAGAGGCTGTGGAG 26106 ||| || || ||||||| ||| | |||| ||||| || || ||||| | Sbjct 12312 CACCTGATCAACAAACCAAGCGAAGCGCGAATCTATCAAATCATTAAGGACGCTGTTGCC 12253 Query 26107 ATCGAGAAGGAGTTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGGCATGAACAACAGA 26166 ||||| | || |||| |||| |||||| | Sbjct 12252 ATCGAACAAGAATTTCTCACTGAAGCATTACCTGTCGCTATGTTGGGTATGAACTGCGAT 12193 Query 26167 CTCATGAGCCAATACATTGAGTATGTGGCCGACCATCTGCTGTGCCAGCTGGGACTCGCC 26226 || |||| ||||||||||| || || || | |||||| | |||| ||| ||| Sbjct 12192 CTGATGAAGAGATACATTGAGTTCGTTGCTGATCGTCTGCTCATCGAGCT-CAACT-GCC 12135 Query 26227 AGACTCTACAGTA--CGCCTAACCCGTTCGACTTTATGGAAAACATATCGTTGGAAGGGA 26284 ||| ||| | | | | || ||||||||||||||||| | || || | ||||| | Sbjct 12134 AGAAGCTATGGAAGTCCACGAATCCGTTCGACTTTATGGAGCAAATTTCCCTCGAAGGCA 12075 Query 26285 AGACCAACTTCTTTGAAAAGAGGGTCGGCGACTATCA 26321 | || || ||||||||||| | || || || || || Sbjct 12074 AAACGAATTTCTTTGAAAAACGCGTTGGTGAATACCA 12038 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928607387269120