Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Varroa_20destructor_20[genbank_20GCA_5F000181155.2_202017-05-09]
20,448 sequences; 331,927,360 total letters
Query= NC_019945.1
Length=132978
Score E
Sequences producing significant alignments: (Bits) Value
seq19980 86.0 5e-12
seq7231 82.4 6e-11
>seq19980
Length=299602
Score = 86.0 bits (94), Expect = 5e-12
Identities = 157/230 (68%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613
||||| || |||||||| || | || || |||||||| ||| || ||||||||
Sbjct 144508 ATGCAGATCTTTGTAAAGACTCTCACCGGGAAAACCATCACCCTGGAGGTTGAACCTTCT 144567
Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673
|| || | | || | ||| |||||| ||||||||||| | ||| |||||
Sbjct 144568 GACACAATTGAGAATGTTAAGGCGAAAATCCAAGACAAAGAGGGTATCCCCCCTGATCAG 144627
Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733
||||| || |||||||| || |||||| | |||||| ||| | | || || ||
Sbjct 144628 CAGAGGCTAATCTTTGCCGGTAAACAACTAGAAGATGGACGTACTCTTTCAGACTACAAT 144687
Query 28734 ATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGGGAT 28783
|| ||||| || || ||||| || | ||| | || | || ||||| ||
Sbjct 144688 ATCCAAAAGGAGTCCACTCTTCATCTTGTACTTCGACTTCGTGGAGGTAT 144737
>seq7231
Length=219762
Score = 82.4 bits (90), Expect = 6e-11
Identities = 104/142 (73%), Gaps = 1/142 (1%)
Strand=Plus/Minus
Query 28647 GACAAAGAGGGAGTGCCCGTAGATCAACAGAGACTTATCTTTGCGGGCAAACAATTGGAA 28706
|||||||| ||| | || ||||||||||| || || ||||| || ||||| | |||
Sbjct 100113 GACAAAGAAGGAATCCCTCCTGATCAACAGAGGCTAATTTTTGCTGGTAAACAGCTCGAA 100054
Query 28707 GATTCTAAAACTATGGCCGATTATAACATTCAAAAAGAATCTACTCTGCACATGGTATTA 28766
||| | ||| | | || ||||||||||| ||||| |||||||| || |||| |
Sbjct 100053 GATGGTCGTACTCTATCTGACTATAACATTCAGAAAGAGTCTACTCTTCATCTGGTGCTC 99994
Query 28767 AGATTACGAGGAGGGATAATAA 28788
||| | || ||| ||| |||||
Sbjct 99993 AGACTCCGCGGA-GGAAAATAA 99973
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 425298784869792
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |