Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Varroa_20destructor_20[genbank_20GCA_5F000181155.2_202017-05-09] 20,448 sequences; 331,927,360 total letters Query= NC_019945.1 Length=132978 Score E Sequences producing significant alignments: (Bits) Value seq19980 86.0 5e-12 seq7231 82.4 6e-11 >seq19980 Length=299602 Score = 86.0 bits (94), Expect = 5e-12 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 ||||| || |||||||| || | || || |||||||| ||| || |||||||| Sbjct 144508 ATGCAGATCTTTGTAAAGACTCTCACCGGGAAAACCATCACCCTGGAGGTTGAACCTTCT 144567 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || || | | || | ||| |||||| ||||||||||| | ||| ||||| Sbjct 144568 GACACAATTGAGAATGTTAAGGCGAAAATCCAAGACAAAGAGGGTATCCCCCCTGATCAG 144627 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 ||||| || |||||||| || |||||| | |||||| ||| | | || || || Sbjct 144628 CAGAGGCTAATCTTTGCCGGTAAACAACTAGAAGATGGACGTACTCTTTCAGACTACAAT 144687 Query 28734 ATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGGGAT 28783 || ||||| || || ||||| || | ||| | || | || ||||| || Sbjct 144688 ATCCAAAAGGAGTCCACTCTTCATCTTGTACTTCGACTTCGTGGAGGTAT 144737 >seq7231 Length=219762 Score = 82.4 bits (90), Expect = 6e-11 Identities = 104/142 (73%), Gaps = 1/142 (1%) Strand=Plus/Minus Query 28647 GACAAAGAGGGAGTGCCCGTAGATCAACAGAGACTTATCTTTGCGGGCAAACAATTGGAA 28706 |||||||| ||| | || ||||||||||| || || ||||| || ||||| | ||| Sbjct 100113 GACAAAGAAGGAATCCCTCCTGATCAACAGAGGCTAATTTTTGCTGGTAAACAGCTCGAA 100054 Query 28707 GATTCTAAAACTATGGCCGATTATAACATTCAAAAAGAATCTACTCTGCACATGGTATTA 28766 ||| | ||| | | || ||||||||||| ||||| |||||||| || |||| | Sbjct 100053 GATGGTCGTACTCTATCTGACTATAACATTCAGAAAGAGTCTACTCTTCATCTGGTGCTC 99994 Query 28767 AGATTACGAGGAGGGATAATAA 28788 ||| | || ||| ||| ||||| Sbjct 99993 AGACTCCGCGGA-GGAAAATAA 99973 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 425298784869792