Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Varroa_20destructor_20[genbank_20GCA_5F000181155.2_202017-05-09] 20,448 sequences; 331,927,360 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq19563 132 6e-26 seq19295 89.7 6e-13 >seq19563 Length=274849 Score = 132 bits (146), Expect = 6e-26 Identities = 396/599 (66%), Gaps = 23/599 (4%) Strand=Plus/Minus Query 75522 ATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATGTAAATCAAGCGG 75581 |||| ||| | ||||||||||| || | || ||||||||| ||||| | || || Sbjct 231341 ATGGCATTGTGCCAATGCTTCGTGTGTACAATAACACAGCGCGATATGTTGACCA---GG 231285 Query 75582 GGCGTCGCAAG-----GGGTCCATC-GCGGTCTACTTGGAACCATGGCATGCCGATATCA 75635 | || ||| |||| | | ||| |||| |||||||||||||||||||||||| Sbjct 231284 GAGGTAATAAGAGGCCGGGTGCTTTTGCGATCTATTTGGAACCATGGCATGCCGATATCT 231225 Query 75636 TGGAGTTCCTTGAGTTACGACTCAACCAAGGTGACGAAGAGGCTCGGTG-TAGAGATCTC 75694 | || ||||| || || || || ||| ||||| | | | | | | ||||| Sbjct 231224 TTGAATTCCTCGATTTGCGCAAGAATACTGGTATTGAAGAA-CACAGAGCTCGTGATCTT 231166 Query 75695 TTTTCATCCCTGTGGATTCCAGACCTTTTCATGAAGCGGGTTGAGGAGGGTGGTCAATGG 75754 || | ||| ||| | || ||||| || ||| || || ||||| ||| || ||| Sbjct 231165 TTCTATGGCCTTTGGGTACCTGACCTGTTTATGCGTCGAGTCGAGGAAAATGGCCAGTGG 231106 Query 75755 TCTCTTTTCTG-TCCAGACAAGGCACCAGGTCTCTCCGACGCGGTGGGTGAGGAGTTTGA 75813 ||| | | || |||| ||| | || || || |||| ||| ||||||| || Sbjct 231105 TCTTTGATGTGCTCCAATCAATGT-CCGGGGCTGAGCGACTGTTGGGGAAAGGAGTTCGA 231047 Query 75814 AGCCCTCTACACAAAGTATGAAGAGGAGGGTAGAGCCAATGCGACTG-TACCAGCCGCCG 75872 | |||||| | |||||| ||||| | || |||| | | || |||| Sbjct 231046 AAAACTCTACGAGCAATATGAACGCGAGGGCCGCTTCA-TGCGCCAGGTAGAAGCCCAGA 230988 Query 75873 ATGTTTGGAAGGCTATTCTCAAATCACAGACGGAGACTGGAACACCATATATGCTTTACA 75932 | ||||| | || |||||| || || | || || || ||||| || || | || | Sbjct 230987 AACTTTGGTATGCCATTCTCGAAAGTCAAATTGAAACAGGCACACCTTACATCTTATATA 230928 Query 75933 AGGATGCTTGTAACAAGAAGAGTAACCAAAAGAATTTGGGAACAATCAAGAGCTCAAATC 75992 | |||||||||||| | ||||| || || | ||| | |||||||||||| |||| ||| Sbjct 230927 AAGATGCTTGTAACCAAAAGAGCAATCAGCAAAATCTTGGAACAATCAAGTGCTCTAATT 230868 Query 75993 TTTGCACGGAAATTTTAGAGTACACAGATAAGGATGAGACGGCTGTTTGCAATTTGGCAT 76052 | || |||||||| | ||||| | | ||||| | || |||||||| | || | Sbjct 230867 TATGTACGGAAATAATCGAGTATTCCTCTCCTGATGAAATCGCAGTTTGCAACCTTGCGT 230808 Query 76053 CAATCGCCCTTCCAAAG-TATGTCAATGAAGAGACTCGCACTTTTGATTATGAAAAACT 76110 || |||| || | | | | ||||||||||| ||| ||||| | || |||||| Sbjct 230807 CACTCGCACT-CAATCGCTTTGTCAATGAAG------GCAAGTTTGACTTTGGAAAACT 230756 >seq19295 Length=205138 Score = 89.7 bits (98), Expect = 6e-13 Identities = 277/424 (65%), Gaps = 10/424 (2%) Strand=Plus/Minus Query 14363 GATGGTCTCAAGCCTTCACAGAGGAAAGTGATGTATGCTTGCTTCCATAAGAATCTCAAG 14422 |||||||| || || |||| | || || ||| | |||||| | | ||| ||| Sbjct 36985 GATGGTCTTAAACCAGGACAGCGTAAGGTATTGTTCACCTGCTTCAAGAGGAACGATAAG 36926 Query 14423 GATGAAATGAAGGTGGCACAACTGGCGGCATATGTCGCGGACAAGTCTGCGTACCACCAT 14482 ||| | || || || || || || | || || || || | ||| ||||| ||||| Sbjct 36925 CGAGAAGTCAAAGTTGCCCAGCTTGCTGGATCCGTAGCAGAAATGTCGGCGTATCACCAC 36866 Query 14483 GGTGAAGTATCCTTAGCGGACACGATTGTTAAGTTGGCAAACGACTACACGGGTTCAAAC 14542 |||||| || || | || || || || ||||| | | | | ||| || Sbjct 36865 GGTGAACAGTCGCTAATGATGACAATCGTCAACTTGGCCCAAAATTTCGTGGGCAGTAAT 36806 Query 14543 AACATTAACCTTCTTGAACCGTGTGGTCAATTTGGTACGCGTCTCATGGGTGGTAAGGAT 14602 ||||| ||||| || | || |||||||| ||||| || || |||||| || ||| Sbjct 36805 AACATCAACCTACTGCAGCCCATCGGTCAATTCGGTACTCGGCTGCAGGGTGGCAAAGAT 36746 Query 14603 GCTTC-TCAGACGAGGTACATTTTCACAAAACTTACCAAGGAGGCTCGCAAGATCTTTGA 14661 || | ||| | |||||||||||||||||||| | | ||| || | | ||| Sbjct 36745 TCTGCGTCACCC-AGGTACATTTTCACAAAACTCAGCCCATTGGCACGAAGTCTATTTCC 36687 Query 14662 TCCTCGGGATGACCCGATCCTCAACTA---CTTGGACGATGA-TGGACGCTCCATTGAAC 14717 | || |||||| || | |||||||| ||| || ||| | || | ||||||| Sbjct 36686 TACTTCGGATGATCCCGTGCTCAACTATCTCTTTGATGATAACCAGAAG----ATTGAAC 36631 Query 14718 CAGACTTTTACATGCCAACTTTACCAATGGTTCTCGTGAATGGAACCGAGGGTATCGGTA 14777 | ||||| || |||| | | | |||||| | | || || || | || |||||||| | Sbjct 36630 CCGACTTCTATCTGCCTATTATTCCAATGATCTTAGTTAACGGTGCTGAAGGTATCGGCA 36571 Query 14778 CGGG 14781 |||| Sbjct 36570 CGGG 36567 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596417116810240