Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Varroa_20destructor_20[genbank_20GCA_5F000181155.2_202017-05-09]
20,448 sequences; 331,927,360 total letters
Query= NC_020852.1
Length=186468
Score E
Sequences producing significant alignments: (Bits) Value
seq19563 132 6e-26
seq19295 89.7 6e-13
>seq19563
Length=274849
Score = 132 bits (146), Expect = 6e-26
Identities = 396/599 (66%), Gaps = 23/599 (4%)
Strand=Plus/Minus
Query 75522 ATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATGTAAATCAAGCGG 75581
|||| ||| | ||||||||||| || | || ||||||||| ||||| | || ||
Sbjct 231341 ATGGCATTGTGCCAATGCTTCGTGTGTACAATAACACAGCGCGATATGTTGACCA---GG 231285
Query 75582 GGCGTCGCAAG-----GGGTCCATC-GCGGTCTACTTGGAACCATGGCATGCCGATATCA 75635
| || ||| |||| | | ||| |||| ||||||||||||||||||||||||
Sbjct 231284 GAGGTAATAAGAGGCCGGGTGCTTTTGCGATCTATTTGGAACCATGGCATGCCGATATCT 231225
Query 75636 TGGAGTTCCTTGAGTTACGACTCAACCAAGGTGACGAAGAGGCTCGGTG-TAGAGATCTC 75694
| || ||||| || || || || ||| ||||| | | | | | | |||||
Sbjct 231224 TTGAATTCCTCGATTTGCGCAAGAATACTGGTATTGAAGAA-CACAGAGCTCGTGATCTT 231166
Query 75695 TTTTCATCCCTGTGGATTCCAGACCTTTTCATGAAGCGGGTTGAGGAGGGTGGTCAATGG 75754
|| | ||| ||| | || ||||| || ||| || || ||||| ||| || |||
Sbjct 231165 TTCTATGGCCTTTGGGTACCTGACCTGTTTATGCGTCGAGTCGAGGAAAATGGCCAGTGG 231106
Query 75755 TCTCTTTTCTG-TCCAGACAAGGCACCAGGTCTCTCCGACGCGGTGGGTGAGGAGTTTGA 75813
||| | | || |||| ||| | || || || |||| ||| ||||||| ||
Sbjct 231105 TCTTTGATGTGCTCCAATCAATGT-CCGGGGCTGAGCGACTGTTGGGGAAAGGAGTTCGA 231047
Query 75814 AGCCCTCTACACAAAGTATGAAGAGGAGGGTAGAGCCAATGCGACTG-TACCAGCCGCCG 75872
| |||||| | |||||| ||||| | || |||| | | || ||||
Sbjct 231046 AAAACTCTACGAGCAATATGAACGCGAGGGCCGCTTCA-TGCGCCAGGTAGAAGCCCAGA 230988
Query 75873 ATGTTTGGAAGGCTATTCTCAAATCACAGACGGAGACTGGAACACCATATATGCTTTACA 75932
| ||||| | || |||||| || || | || || || ||||| || || | || |
Sbjct 230987 AACTTTGGTATGCCATTCTCGAAAGTCAAATTGAAACAGGCACACCTTACATCTTATATA 230928
Query 75933 AGGATGCTTGTAACAAGAAGAGTAACCAAAAGAATTTGGGAACAATCAAGAGCTCAAATC 75992
| |||||||||||| | ||||| || || | ||| | |||||||||||| |||| |||
Sbjct 230927 AAGATGCTTGTAACCAAAAGAGCAATCAGCAAAATCTTGGAACAATCAAGTGCTCTAATT 230868
Query 75993 TTTGCACGGAAATTTTAGAGTACACAGATAAGGATGAGACGGCTGTTTGCAATTTGGCAT 76052
| || |||||||| | ||||| | | ||||| | || |||||||| | || |
Sbjct 230867 TATGTACGGAAATAATCGAGTATTCCTCTCCTGATGAAATCGCAGTTTGCAACCTTGCGT 230808
Query 76053 CAATCGCCCTTCCAAAG-TATGTCAATGAAGAGACTCGCACTTTTGATTATGAAAAACT 76110
|| |||| || | | | | ||||||||||| ||| ||||| | || ||||||
Sbjct 230807 CACTCGCACT-CAATCGCTTTGTCAATGAAG------GCAAGTTTGACTTTGGAAAACT 230756
>seq19295
Length=205138
Score = 89.7 bits (98), Expect = 6e-13
Identities = 277/424 (65%), Gaps = 10/424 (2%)
Strand=Plus/Minus
Query 14363 GATGGTCTCAAGCCTTCACAGAGGAAAGTGATGTATGCTTGCTTCCATAAGAATCTCAAG 14422
|||||||| || || |||| | || || ||| | |||||| | | ||| |||
Sbjct 36985 GATGGTCTTAAACCAGGACAGCGTAAGGTATTGTTCACCTGCTTCAAGAGGAACGATAAG 36926
Query 14423 GATGAAATGAAGGTGGCACAACTGGCGGCATATGTCGCGGACAAGTCTGCGTACCACCAT 14482
||| | || || || || || || | || || || || | ||| ||||| |||||
Sbjct 36925 CGAGAAGTCAAAGTTGCCCAGCTTGCTGGATCCGTAGCAGAAATGTCGGCGTATCACCAC 36866
Query 14483 GGTGAAGTATCCTTAGCGGACACGATTGTTAAGTTGGCAAACGACTACACGGGTTCAAAC 14542
|||||| || || | || || || || ||||| | | | | ||| ||
Sbjct 36865 GGTGAACAGTCGCTAATGATGACAATCGTCAACTTGGCCCAAAATTTCGTGGGCAGTAAT 36806
Query 14543 AACATTAACCTTCTTGAACCGTGTGGTCAATTTGGTACGCGTCTCATGGGTGGTAAGGAT 14602
||||| ||||| || | || |||||||| ||||| || || |||||| || |||
Sbjct 36805 AACATCAACCTACTGCAGCCCATCGGTCAATTCGGTACTCGGCTGCAGGGTGGCAAAGAT 36746
Query 14603 GCTTC-TCAGACGAGGTACATTTTCACAAAACTTACCAAGGAGGCTCGCAAGATCTTTGA 14661
|| | ||| | |||||||||||||||||||| | | ||| || | | |||
Sbjct 36745 TCTGCGTCACCC-AGGTACATTTTCACAAAACTCAGCCCATTGGCACGAAGTCTATTTCC 36687
Query 14662 TCCTCGGGATGACCCGATCCTCAACTA---CTTGGACGATGA-TGGACGCTCCATTGAAC 14717
| || |||||| || | |||||||| ||| || ||| | || | |||||||
Sbjct 36686 TACTTCGGATGATCCCGTGCTCAACTATCTCTTTGATGATAACCAGAAG----ATTGAAC 36631
Query 14718 CAGACTTTTACATGCCAACTTTACCAATGGTTCTCGTGAATGGAACCGAGGGTATCGGTA 14777
| ||||| || |||| | | | |||||| | | || || || | || |||||||| |
Sbjct 36630 CCGACTTCTATCTGCCTATTATTCCAATGATCTTAGTTAACGGTGCTGAAGGTATCGGCA 36571
Query 14778 CGGG 14781
||||
Sbjct 36570 CGGG 36567
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 596417116810240
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |