Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Varroa_20destructor_20[genbank_20GCA_5F000181155.2_202017-05-09]
20,448 sequences; 331,927,360 total letters
Query= NC_021246.1
Length=281182
Score E
Sequences producing significant alignments: (Bits) Value
seq7231 147 4e-30
seq19980 122 2e-22
>seq7231
Length=219762
Score = 147 bits (162), Expect = 4e-30
Identities = 174/236 (74%), Gaps = 0/236 (0%)
Strand=Plus/Plus
Query 193126 TTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTAT 193185
||||| | || || | | || || |||||||| | |||| |||||| ||| ||||
Sbjct 99972 TTTATTTTCCTCCGCGGAGTCTGAGCACCAGATGAAGAGTAGACTCTTTCTGAATGTTAT 100031
Query 193186 AGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGAT 193245
|||| |||| || | | ||| || | ||||| || |||||||||| ||||||||||
Sbjct 100032 AGTCAGATAGAGTACGACCATCTTCGAGCTGTTTACCAGCAAAAATTAGCCTCTGTTGAT 100091
Query 193246 CAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAG 193305
||||||| ||||||||||| || || ||||||| || | ||| ||| ||||| |
Sbjct 100092 CAGGAGGGATTCCTTCTTTGTCCTGAATTTTGGCCTTGACGTTTTCAATGGTATCACTGG 100151
Query 193306 ACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATT 193361
| || || || || || |||||||| ||||| ||||| || || || || ||||||
Sbjct 100152 ATTCTACCTCGAGTGTGATAGTTTTGCCTGTGAGCGTCTTCACGAAAATCTGCATT 100207
Score = 136 bits (150), Expect = 7e-27
Identities = 168/230 (73%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190
||||| || | | |||||| || ||||| | || | |||||| ||||| |||||
Sbjct 100433 ATACCTCCACGAAGTCGAAGAACAAGATGGAGGGTGGACTCTTTTTGGATATTGTAGTCT 100492
Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250
|| | || | | || || | |||||| |||||||| || || ||||||||||| |||
Sbjct 100493 GAAAGGGTACGACCGTCTTCAAGTTGTTTACCGGCAAAGATCAACCTCTGTTGATCTGGA 100552
Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310
|| || |||||||| ||||| ||||| | ||| | ||| ||| || || || | ||||
Sbjct 100553 GGGATACCTTCTTTGTCTTGGATTTTCGCTTTAACATTCTCAATTGTGTCAGAGGGCTCA 100612
Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360
||||| || || ||||| || || || || ||||| || || || |||||
Sbjct 100613 ACTTCCAGGGTAATAGTCTTTCCGGTAAGGGTTTTCACGAAGATCTGCAT 100662
Score = 123 bits (136), Expect = 4e-23
Identities = 166/231 (72%), Gaps = 0/231 (0%)
Strand=Plus/Plus
Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190
||||| || | | || |||||| ||||| | || | |||||| ||||| |||||
Sbjct 100661 ATACCTCCGCGAAGTCTAAGTACAAGATGGAGCGTGGACTCTTTTTGGATATTGTAGTCC 100720
Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250
|| | || | || || || |||||||| ||||| |||||||||||||| || ||
Sbjct 100721 GAAAGAGTACGTCCGTCTTCCAACTGTTTTCCAGCAAAGATTAATCTCTGTTGGTCTGGG 100780
Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310
|| || || || || ||||| || || | || | |||| || ||||| ||||| ||
Sbjct 100781 GGAATACCCTCCTTGTCTTGAATCTTTGCCTTGACATTTTCGATTGTATCTGAAGATTCC 100840
Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATT 193361
|| || || || ||||| ||||| ||||| ||||| || || || ||||||
Sbjct 100841 ACCTCAAGGGTGATAGTCTTACCGGTTAGGGTTTTCACGAAAATCTGCATT 100891
Score = 113 bits (124), Expect = 8e-20
Identities = 154/215 (72%), Gaps = 0/215 (0%)
Strand=Plus/Plus
Query 193146 CGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAA 193205
|| ||||| || || | |||| |||||| ||| |||||||| |||| |||||
Sbjct 100220 CGTAGTACGAGGTGTAGAGTAGACTCTTTCTGAATGTTATAGTCTGATAGCGTTCGGCCG 100279
Query 193206 TCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTA 193265
|| || | || || || ||||| ||||| || || ||||| || || || ||||| ||
Sbjct 100280 TCTTCAAGCTGCTTGCCAGCAAAGATTAACCTTTGCTGATCGGGCGGAATACCTTCCTTG 100339
Query 193266 TCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATA 193325
||||| || || | || | ||| || |||||| || ||||| |||||||| ||
Sbjct 100340 TCTTGAATCTTTGCCTTAACGTTTTCGATTGTATCGCTAGGTTCAACCTCTAGAGTGATC 100399
Query 193326 GTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360
|| || || || ||||||||||| || || |||||
Sbjct 100400 GTCTTTCCGGTCAGCGTTTTTACGAAGATCTGCAT 100434
Score = 98.7 bits (108), Expect = 2e-15
Identities = 140/196 (71%), Gaps = 1/196 (1%)
Strand=Plus/Plus
Query 193179 ATATTATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTC 193238
||||| || ||||| | || | | || |||| || || || || ||||| | | |
Sbjct 93945 ATATTGTAATCGGAGAGTGTGCGACCGTCCTCTAGCTGCTTGCCAGCGAAAATCAGACGC 94004
Query 193239 TGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTA 193298
|| ||||| || || || ||||||||||| || || || || || | || || ||
Sbjct 94005 TGCTGATCTGGTGGAATACCTTCTTTATCCTGGATCTTTGTCTTGACGTTCTCGATCGTG 94064
Query 193299 TCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGC 193358
|| || ||| || |||||||| |||||||| || |||| ||||| ||||| ||||||
Sbjct 94065 TCCGATCCCTCTACGTCTAGAGTGATAGTTTTCCCAGTTAATGTTTTCACAAAGATTTGC 94124
Query 193359 ATTTTATTAGTAAAAT 193374
||||| | |||||||
Sbjct 94125 ATTTT-TCTGTAAAAT 94139
>seq19980
Length=299602
Score = 122 bits (134), Expect = 2e-22
Identities = 165/230 (72%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190
||||| || | | |||||| || || || | || | ||| || |||||| |||||
Sbjct 144965 ATACCGCCACGAAGTCGAAGGACAAGGTGGAGGGTGGACTCCTTTTGAATATTGTAGTCC 144906
Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250
|| | || | ||| || | || ||||||||||| || |||||||||||||| ||
Sbjct 144905 GAAAGGGTGCGTCCATCTTCAAGCTGCTTTCCGGCAAAGATCAATCTCTGTTGATCGGGG 144846
Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310
|| |||||||| || ||||| || |||| |||| || ||| ||||| |||| |||
Sbjct 144845 GGAATTCCTTCCTTGTCTTGAATCTTGGCCTTTACGTTCTCAATTGTATCAGAAGGCTCC 144786
Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360
||||| | || || || || || || || ||||| || || ||||||||
Sbjct 144785 ACTTCCAAGGTGATGGTCTTCCCAGTAAGGGTTTTGACGAAAATTTGCAT 144736
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 899424448335360
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |