Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Varroa_20destructor_20[genbank_20GCA_5F000181155.2_202017-05-09]
20,448 sequences; 331,927,360 total letters
Query= NC_021247.1
Length=228750
Score E
Sequences producing significant alignments: (Bits) Value
seq7231 104 3e-17
>seq7231
Length=219762
Score = 104 bits (114), Expect = 3e-17
Identities = 153/217 (71%), Gaps = 0/217 (0%)
Strand=Plus/Minus
Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881
|||||| || || | || || | || || |||||||| ||| | || || |||
Sbjct 100207 AATGCAGATTTTCGTGAAGACGCTCACAGGCAAAACTATCACACTCGAGGTAGAATCCAG 100148
Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941
||||| ||| |||||| || ||||| || || |||||||| || ||||| || ||
Sbjct 100147 TGATACCATTGAAAACGTCAAGGCCAAAATTCAGGACAAAGAAGGAATCCCTCCTGATCA 100088
Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAA 156001
||| || | |||| ||| ||||| |||||||||||| | ||| |||| || |||||
Sbjct 100087 ACAGAGGCTAATTTTTGCTGGTAAACAGCTCGAAGATGGTCGTACTCTATCTGACTATAA 100028
Query 156002 TATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAGA 156038
|| |||||| | || |||||| | ||| | |||
Sbjct 100027 CATTCAGAAAGAGTCTACTCTTCATCTGGTGCTCAGA 99991
Score = 98.7 bits (108), Expect = 1e-15
Identities = 151/213 (71%), Gaps = 2/213 (1%)
Strand=Plus/Minus
Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882
||||| || ||| | || || | ||||||||||| || || | ||||| |||
Sbjct 93898 ATGCAGATCTTTGTGAAGACGCTCACTGGAAAAACCATCACCCTTGAAGTTGAACCCAGC 93839
Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942
|||| ||| ||| ||||| ||||| || |||||||| ||||| ||||| || ||
Sbjct 93838 GATACAATTGAAAATGTGAAGGCAAAAATCCAGGATAAAGAGGGCATCCCTCCGGATCAG 93779
Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002
||| | |||| | ||| || ||||| || ||||| | | || | ||||||||||||
Sbjct 93778 CAACGTCTGATCTTTGCTGGCAAGCAACTGGAAGACGGCCGTACCCTCTCAGATTATAAT 93719
Query 156003 ATATCCAAA-GAGGCGACGCTTCATTTAGTGTT 156034
|| || ||| ||| |||| || ||| | || ||
Sbjct 93718 AT-TCAAAAGGAGTCGACACTGCATCTCGTCTT 93687
Score = 96.9 bits (106), Expect = 5e-15
Identities = 145/206 (70%), Gaps = 0/206 (0%)
Strand=Plus/Minus
Query 155820 AAAATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGAT 155879
||||||||||| ||| | |||||||| ||||| |||||||| || |||| || || |
Sbjct 94129 AAAATGCAAATCTTTGTGAAAACATTAACTGGGAAAACTATCACTCTAGACGTAGAGGGA 94070
Query 155880 TCTGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAA 155939
|| || | || ||||| || | || || || ||||||||||| || || |||||
Sbjct 94069 TCGGACACGATCGAGAACGTCAAGACAAAGATCCAGGATAAAGAAGGTATTCCACCAGAT 94010
Query 155940 CAACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTAT 155999
|| || | |||||| || || |||||||| || || | || | || |||||
Sbjct 94009 CAGCAGCGTCTGATTTTCGCTGGCAAGCAGCTAGAGGACGGTCGCACACTCTCCGATTAC 93950
Query 156000 AATATATCCAAAGAGGCGACGCTTCA 156025
|||||| || || |||| |||||
Sbjct 93949 AATATACAGAAGGAATCGACTCTTCA 93924
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 731684933516800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |