Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Varroa_20destructor_20[genbank_20GCA_5F000181155.2_202017-05-09] 20,448 sequences; 331,927,360 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq7231 104 3e-17 >seq7231 Length=219762 Score = 104 bits (114), Expect = 3e-17 Identities = 153/217 (71%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 |||||| || || | || || | || || |||||||| ||| | || || ||| Sbjct 100207 AATGCAGATTTTCGTGAAGACGCTCACAGGCAAAACTATCACACTCGAGGTAGAATCCAG 100148 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 ||||| ||| |||||| || ||||| || || |||||||| || ||||| || || Sbjct 100147 TGATACCATTGAAAACGTCAAGGCCAAAATTCAGGACAAAGAAGGAATCCCTCCTGATCA 100088 Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAA 156001 ||| || | |||| ||| ||||| |||||||||||| | ||| |||| || ||||| Sbjct 100087 ACAGAGGCTAATTTTTGCTGGTAAACAGCTCGAAGATGGTCGTACTCTATCTGACTATAA 100028 Query 156002 TATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAGA 156038 || |||||| | || |||||| | ||| | ||| Sbjct 100027 CATTCAGAAAGAGTCTACTCTTCATCTGGTGCTCAGA 99991 Score = 98.7 bits (108), Expect = 1e-15 Identities = 151/213 (71%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || ||| | || || | ||||||||||| || || | ||||| ||| Sbjct 93898 ATGCAGATCTTTGTGAAGACGCTCACTGGAAAAACCATCACCCTTGAAGTTGAACCCAGC 93839 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| ||| ||| ||||| ||||| || |||||||| ||||| ||||| || || Sbjct 93838 GATACAATTGAAAATGTGAAGGCAAAAATCCAGGATAAAGAGGGCATCCCTCCGGATCAG 93779 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 ||| | |||| | ||| || ||||| || ||||| | | || | |||||||||||| Sbjct 93778 CAACGTCTGATCTTTGCTGGCAAGCAACTGGAAGACGGCCGTACCCTCTCAGATTATAAT 93719 Query 156003 ATATCCAAA-GAGGCGACGCTTCATTTAGTGTT 156034 || || ||| ||| |||| || ||| | || || Sbjct 93718 AT-TCAAAAGGAGTCGACACTGCATCTCGTCTT 93687 Score = 96.9 bits (106), Expect = 5e-15 Identities = 145/206 (70%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 155820 AAAATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGAT 155879 ||||||||||| ||| | |||||||| ||||| |||||||| || |||| || || | Sbjct 94129 AAAATGCAAATCTTTGTGAAAACATTAACTGGGAAAACTATCACTCTAGACGTAGAGGGA 94070 Query 155880 TCTGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAA 155939 || || | || ||||| || | || || || ||||||||||| || || ||||| Sbjct 94069 TCGGACACGATCGAGAACGTCAAGACAAAGATCCAGGATAAAGAAGGTATTCCACCAGAT 94010 Query 155940 CAACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTAT 155999 || || | |||||| || || |||||||| || || | || | || ||||| Sbjct 94009 CAGCAGCGTCTGATTTTCGCTGGCAAGCAGCTAGAGGACGGTCGCACACTCTCCGATTAC 93950 Query 156000 AATATATCCAAAGAGGCGACGCTTCA 156025 |||||| || || |||| ||||| Sbjct 93949 AATATACAGAAGGAATCGACTCTTCA 93924 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731684933516800