Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Varroa_20destructor_20[genbank_20GCA_5F000181155.2_202017-05-09] 20,448 sequences; 331,927,360 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq19980 131 3e-25 seq7231 123 5e-23 >seq19980 Length=299602 Score = 131 bits (144), Expect = 3e-25 Identities = 168/232 (72%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 |||||||||| ||||| || || | ||| | || | ||||| ||| || |||||| Sbjct 144509 ATACCACCTCGCAGACGCAAGACAAGATGAAGGGTCGATTCTTTCTGGATGTTGTAATCA 144450 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || | || ||| | || ||||| |||||||||||||||||||| ||||| || || || Sbjct 144449 GAAAGAGTACGTCCGTCTTCCAACTGTTTACCAGCAAAGATTAACCTCTGCTGGTCTGGG 144390 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || || || |||||||| || || || ||||| || | ||| || || || Sbjct 144389 GGAATCCCCTCCTTATCTTGAATCTTCGCCTTGACATTTTCGATTGTATCAGAAGACTCC 144330 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTT 192538 || || || || || || || || ||||| ||||| | ||| || ||||||| Sbjct 144329 ACCTCAAGGGTGATAGTCTTTCCGGTTAAAGTTTTCACAAAAATTTGCATTT 144278 Score = 91.5 bits (100), Expect = 3e-13 Identities = 135/190 (71%), Gaps = 1/190 (1%) Strand=Plus/Minus Query 192347 CTTTAGAGATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGA 192406 |||| || ||||| || || || | || ||| |||| || | || || || ||||||| Sbjct 144924 CTTTTGA-ATATTGTAGTCCGAAAGGGTGCGTCCATCTTCAAGCTGCTTTCCGGCAAAGA 144866 Query 192407 TTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAG 192466 | |||||||||||||| || || |||||||| || ||||| || || ||||| || Sbjct 144865 TCAATCTCTGTTGATCGGGGGGAATTCCTTCCTTGTCTTGAATCTTGGCCTTTACGTTCT 144806 Query 192467 TTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAA 192526 || | ||| || | || ||||| | || ||||| || ||||| | ||||| | | Sbjct 144805 CAATTGTATCAGAAGGCTCCACTTCCAAGGTGATGGTCTTCCCAGTAAGGGTTTTGACGA 144746 Query 192527 ATATCTGCAT 192536 | || ||||| Sbjct 144745 AAATTTGCAT 144736 >seq7231 Length=219762 Score = 123 bits (136), Expect = 5e-23 Identities = 166/231 (72%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 ||||| || | ||| | | ||| | ||| | || | |||||| |||||| || || Sbjct 100661 ATACCTCCGCGAAGTCTAAGTACAAGATGGAGCGTGGACTCTTTTTGGATATTGTAGTCC 100720 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || | || ||| | || ||||| ||||| ||||||||||||||||||||||| || || Sbjct 100721 GAAAGAGTACGTCCGTCTTCCAACTGTTTTCCAGCAAAGATTAATCTCTGTTGGTCTGGG 100780 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || || || || ||||| || || || ||||| || | |||||| ||||| Sbjct 100781 GGAATACCCTCCTTGTCTTGAATCTTTGCCTTGACATTTTCGATTGTATCTGAAGATTCC 100840 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATT 192537 || || || || || || ||||| |||| ||||| | || ||||||||| Sbjct 100841 ACCTCAAGGGTGATAGTCTTACCGGTTAGGGTTTTCACGAAAATCTGCATT 100891 Score = 113 bits (124), Expect = 9e-20 Identities = 148/205 (72%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 192333 ATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGATAATGTTCGTTCATCATCCAATTG 192392 ||| | ||||| |||||| || ||||| ||||||| || || |||| || | || Sbjct 100003 ATGAAGAGTAGACTCTTTCTGAATGTTATAGTCAGATAGAGTACGACCATCTTCGAGCTG 100062 Query 192393 TTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTT 192452 |||||||||||| |||| |||||||||||||| || ||||||||||| || || ||||| Sbjct 100063 TTTACCAGCAAAAATTAGCCTCTGTTGATCAGGAGGGATTCCTTCTTTGTCCTGAATTTT 100122 Query 192453 ATTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGT 192512 || || || || | ||| |||||||| || || || || ||||| || || Sbjct 100123 GGCCTTGACGTTTTCAATGGTATCACTGGATTCTACCTCGAGTGTGATAGTTTTGCCTGT 100182 Query 192513 TAATGTTTTAATAAATATCTGCATT 192537 | || || | || ||||||||| Sbjct 100183 GAGCGTCTTCACGAAAATCTGCATT 100207 Score = 109 bits (120), Expect = 1e-18 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 ||||| || | ||| || | || | ||| | || | |||||| |||||| || || Sbjct 100433 ATACCTCCACGAAGTCGAAGAACAAGATGGAGGGTGGACTCTTTTTGGATATTGTAGTCT 100492 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || | || || | || || | ||||||||| |||||||| || ||||||||||| || Sbjct 100493 GAAAGGGTACGACCGTCTTCAAGTTGTTTACCGGCAAAGATCAACCTCTGTTGATCTGGA 100552 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || |||||||| ||||| ||||| ||| ||||| || | || || | || Sbjct 100553 GGGATACCTTCTTTGTCTTGGATTTTCGCTTTAACATTCTCAATTGTGTCAGAGGGCTCA 100612 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 ||||| || ||||| || || || || | ||||| | || |||||||| Sbjct 100613 ACTTCCAGGGTAATAGTCTTTCCGGTAAGGGTTTTCACGAAGATCTGCAT 100662 Score = 104 bits (114), Expect = 5e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || || |||| |||||||| ||| | |||| ||||| |||||| || ||||| || Sbjct 100205 ATTCCTCCTCGAAGACGTAGTACGAGGTGTAGAGTAGACTCTTTCTGAATGTTATAGTCT 100264 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 |||| ||||| | || || | || || |||||||||||||| || || ||||| || Sbjct 100265 GATAGCGTTCGGCCGTCTTCAAGCTGCTTGCCAGCAAAGATTAACCTTTGCTGATCGGGC 100324 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || ||||| || ||||| || || || || || || | ||| | ||| Sbjct 100325 GGAATACCTTCCTTGTCTTGAATCTTTGCCTTAACGTTTTCGATTGTATCGCTAGGTTCA 100384 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || |||||||| || || || || || | ||||| | || |||||||| Sbjct 100385 ACCTCTAGAGTGATCGTCTTTCCGGTCAGCGTTTTTACGAAGATCTGCAT 100434 Score = 100 bits (110), Expect = 6e-16 Identities = 133/185 (72%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 192355 ATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTC 192414 ||||| ||||| || | ||| || | || || | || || ||||| || || | | | Sbjct 93945 ATATTGTAATCGGAGAGTGTGCGACCGTCCTCTAGCTGCTTGCCAGCGAAAATCAGACGC 94004 Query 192415 TGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAA 192474 || ||||| ||||| || ||||||||||| || || || | || || || || | Sbjct 94005 TGCTGATCTGGTGGAATACCTTCTTTATCCTGGATCTTTGTCTTGACGTTCTCGATCGTG 94064 Query 192475 TCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGC 192534 || || ||||| |||||||| || ||||| |||||||||||||| | ||| || ||| Sbjct 94065 TCCGATCCCTCTACGTCTAGAGTGATAGTTTTCCCAGTTAATGTTTTCACAAAGATTTGC 94124 Query 192535 ATTTT 192539 ||||| Sbjct 94125 ATTTT 94129 Score = 98.7 bits (108), Expect = 2e-15 Identities = 162/231 (70%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTC-TTTAGAGATATTATAATC 192365 || ||||| | ||| || || || | ||| | || | ||| ||| || ||||||||||| Sbjct 93669 ATGCCACCGCGAAGCCGCAAGACGAGATGCAGTGTCGACTCCTTTTGA-ATATTATAATC 93727 Query 192366 AGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGG 192425 || | || || | || |||| ||| || ||||||||||| | | || ||||| || Sbjct 93728 TGAGAGGGTACGGCCGTCTTCCAGTTGCTTGCCAGCAAAGATCAGACGTTGCTGATCCGG 93787 Query 192426 TGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTC 192485 || || || |||||||| || ||||| || ||||| || | ||| | ||| Sbjct 93788 AGGGATGCCCTCTTTATCCTGGATTTTTGCCTTCACATTTTCAATTGTATCGCTGGGTTC 93847 Query 192486 TACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 ||||| || || |||||||| ||||| | || || | ||| |||||||| Sbjct 93848 AACTTCAAGGGTGATGGTTTTTCCAGTGAGCGTCTTCACAAAGATCTGCAT 93898 Score = 84.2 bits (92), Expect = 4e-11 Identities = 129/184 (70%), Gaps = 0/184 (0%) Strand=Plus/Plus Query 192354 GATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCT 192413 ||| || || || |||| || || | || || | |||||| ||||||||||| | | Sbjct 92844 GATGTTGTAGTCCGATAGCGTGCGACCGTCCTCGAGTTGTTTTCCAGCAAAGATGAGACG 92903 Query 192414 CTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGA 192473 |||||| ||||| || || || ||||| ||||| ||||| |||||| || || | Sbjct 92904 CTGTTGGTCAGGCGGAATGCCCTCTTTGTCTTGAATTTTCGCTTTTACGTTCTCAATGGT 92963 Query 192474 ATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTG 192533 || | || ||||| || || || ||||| || || | ||||| | ||| ||||| Sbjct 92964 GTCGCTTGGCTCAACTTCAAGTGTTATTGTTTTTCCCGTAAGGGTTTTCACAAAAATCTG 93023 Query 192534 CATT 192537 |||| Sbjct 93024 CATT 93027 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 984222076084800