Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Varroa_20destructor_20[genbank_20GCA_5F000181155.2_202017-05-09]
20,448 sequences; 331,927,360 total letters
Query= NC_021248.1
Length=307691
Score E
Sequences producing significant alignments: (Bits) Value
seq19980 131 3e-25
seq7231 123 5e-23
>seq19980
Length=299602
Score = 131 bits (144), Expect = 3e-25
Identities = 168/232 (72%), Gaps = 0/232 (0%)
Strand=Plus/Minus
Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366
|||||||||| ||||| || || | ||| | || | ||||| ||| || ||||||
Sbjct 144509 ATACCACCTCGCAGACGCAAGACAAGATGAAGGGTCGATTCTTTCTGGATGTTGTAATCA 144450
Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426
|| | || ||| | || ||||| |||||||||||||||||||| ||||| || || ||
Sbjct 144449 GAAAGAGTACGTCCGTCTTCCAACTGTTTACCAGCAAAGATTAACCTCTGCTGGTCTGGG 144390
Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486
|| || || || |||||||| || || || ||||| || | ||| || || ||
Sbjct 144389 GGAATCCCCTCCTTATCTTGAATCTTCGCCTTGACATTTTCGATTGTATCAGAAGACTCC 144330
Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTT 192538
|| || || || || || || || ||||| ||||| | ||| || |||||||
Sbjct 144329 ACCTCAAGGGTGATAGTCTTTCCGGTTAAAGTTTTCACAAAAATTTGCATTT 144278
Score = 91.5 bits (100), Expect = 3e-13
Identities = 135/190 (71%), Gaps = 1/190 (1%)
Strand=Plus/Minus
Query 192347 CTTTAGAGATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGA 192406
|||| || ||||| || || || | || ||| |||| || | || || || |||||||
Sbjct 144924 CTTTTGA-ATATTGTAGTCCGAAAGGGTGCGTCCATCTTCAAGCTGCTTTCCGGCAAAGA 144866
Query 192407 TTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAG 192466
| |||||||||||||| || || |||||||| || ||||| || || ||||| ||
Sbjct 144865 TCAATCTCTGTTGATCGGGGGGAATTCCTTCCTTGTCTTGAATCTTGGCCTTTACGTTCT 144806
Query 192467 TTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAA 192526
|| | ||| || | || ||||| | || ||||| || ||||| | ||||| | |
Sbjct 144805 CAATTGTATCAGAAGGCTCCACTTCCAAGGTGATGGTCTTCCCAGTAAGGGTTTTGACGA 144746
Query 192527 ATATCTGCAT 192536
| || |||||
Sbjct 144745 AAATTTGCAT 144736
>seq7231
Length=219762
Score = 123 bits (136), Expect = 5e-23
Identities = 166/231 (72%), Gaps = 0/231 (0%)
Strand=Plus/Plus
Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366
||||| || | ||| | | ||| | ||| | || | |||||| |||||| || ||
Sbjct 100661 ATACCTCCGCGAAGTCTAAGTACAAGATGGAGCGTGGACTCTTTTTGGATATTGTAGTCC 100720
Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426
|| | || ||| | || ||||| ||||| ||||||||||||||||||||||| || ||
Sbjct 100721 GAAAGAGTACGTCCGTCTTCCAACTGTTTTCCAGCAAAGATTAATCTCTGTTGGTCTGGG 100780
Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486
|| || || || || ||||| || || || ||||| || | |||||| |||||
Sbjct 100781 GGAATACCCTCCTTGTCTTGAATCTTTGCCTTGACATTTTCGATTGTATCTGAAGATTCC 100840
Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATT 192537
|| || || || || || ||||| |||| ||||| | || |||||||||
Sbjct 100841 ACCTCAAGGGTGATAGTCTTACCGGTTAGGGTTTTCACGAAAATCTGCATT 100891
Score = 113 bits (124), Expect = 9e-20
Identities = 148/205 (72%), Gaps = 0/205 (0%)
Strand=Plus/Plus
Query 192333 ATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGATAATGTTCGTTCATCATCCAATTG 192392
||| | ||||| |||||| || ||||| ||||||| || || |||| || | ||
Sbjct 100003 ATGAAGAGTAGACTCTTTCTGAATGTTATAGTCAGATAGAGTACGACCATCTTCGAGCTG 100062
Query 192393 TTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTT 192452
|||||||||||| |||| |||||||||||||| || ||||||||||| || || |||||
Sbjct 100063 TTTACCAGCAAAAATTAGCCTCTGTTGATCAGGAGGGATTCCTTCTTTGTCCTGAATTTT 100122
Query 192453 ATTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGT 192512
|| || || || | ||| |||||||| || || || || ||||| || ||
Sbjct 100123 GGCCTTGACGTTTTCAATGGTATCACTGGATTCTACCTCGAGTGTGATAGTTTTGCCTGT 100182
Query 192513 TAATGTTTTAATAAATATCTGCATT 192537
| || || | || |||||||||
Sbjct 100183 GAGCGTCTTCACGAAAATCTGCATT 100207
Score = 109 bits (120), Expect = 1e-18
Identities = 162/230 (70%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366
||||| || | ||| || | || | ||| | || | |||||| |||||| || ||
Sbjct 100433 ATACCTCCACGAAGTCGAAGAACAAGATGGAGGGTGGACTCTTTTTGGATATTGTAGTCT 100492
Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426
|| | || || | || || | ||||||||| |||||||| || ||||||||||| ||
Sbjct 100493 GAAAGGGTACGACCGTCTTCAAGTTGTTTACCGGCAAAGATCAACCTCTGTTGATCTGGA 100552
Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486
|| || |||||||| ||||| ||||| ||| ||||| || | || || | ||
Sbjct 100553 GGGATACCTTCTTTGTCTTGGATTTTCGCTTTAACATTCTCAATTGTGTCAGAGGGCTCA 100612
Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536
||||| || ||||| || || || || | ||||| | || ||||||||
Sbjct 100613 ACTTCCAGGGTAATAGTCTTTCCGGTAAGGGTTTTCACGAAGATCTGCAT 100662
Score = 104 bits (114), Expect = 5e-17
Identities = 161/230 (70%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366
|| || |||| |||||||| ||| | |||| ||||| |||||| || ||||| ||
Sbjct 100205 ATTCCTCCTCGAAGACGTAGTACGAGGTGTAGAGTAGACTCTTTCTGAATGTTATAGTCT 100264
Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426
|||| ||||| | || || | || || |||||||||||||| || || ||||| ||
Sbjct 100265 GATAGCGTTCGGCCGTCTTCAAGCTGCTTGCCAGCAAAGATTAACCTTTGCTGATCGGGC 100324
Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486
|| || ||||| || ||||| || || || || || || | ||| | |||
Sbjct 100325 GGAATACCTTCCTTGTCTTGAATCTTTGCCTTAACGTTTTCGATTGTATCGCTAGGTTCA 100384
Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536
|| |||||||| || || || || || | ||||| | || ||||||||
Sbjct 100385 ACCTCTAGAGTGATCGTCTTTCCGGTCAGCGTTTTTACGAAGATCTGCAT 100434
Score = 100 bits (110), Expect = 6e-16
Identities = 133/185 (72%), Gaps = 0/185 (0%)
Strand=Plus/Plus
Query 192355 ATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTC 192414
||||| ||||| || | ||| || | || || | || || ||||| || || | | |
Sbjct 93945 ATATTGTAATCGGAGAGTGTGCGACCGTCCTCTAGCTGCTTGCCAGCGAAAATCAGACGC 94004
Query 192415 TGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAA 192474
|| ||||| ||||| || ||||||||||| || || || | || || || || |
Sbjct 94005 TGCTGATCTGGTGGAATACCTTCTTTATCCTGGATCTTTGTCTTGACGTTCTCGATCGTG 94064
Query 192475 TCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGC 192534
|| || ||||| |||||||| || ||||| |||||||||||||| | ||| || |||
Sbjct 94065 TCCGATCCCTCTACGTCTAGAGTGATAGTTTTCCCAGTTAATGTTTTCACAAAGATTTGC 94124
Query 192535 ATTTT 192539
|||||
Sbjct 94125 ATTTT 94129
Score = 98.7 bits (108), Expect = 2e-15
Identities = 162/231 (70%), Gaps = 2/231 (1%)
Strand=Plus/Plus
Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTC-TTTAGAGATATTATAATC 192365
|| ||||| | ||| || || || | ||| | || | ||| ||| || |||||||||||
Sbjct 93669 ATGCCACCGCGAAGCCGCAAGACGAGATGCAGTGTCGACTCCTTTTGA-ATATTATAATC 93727
Query 192366 AGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGG 192425
|| | || || | || |||| ||| || ||||||||||| | | || ||||| ||
Sbjct 93728 TGAGAGGGTACGGCCGTCTTCCAGTTGCTTGCCAGCAAAGATCAGACGTTGCTGATCCGG 93787
Query 192426 TGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTC 192485
|| || || |||||||| || ||||| || ||||| || | ||| | |||
Sbjct 93788 AGGGATGCCCTCTTTATCCTGGATTTTTGCCTTCACATTTTCAATTGTATCGCTGGGTTC 93847
Query 192486 TACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536
||||| || || |||||||| ||||| | || || | ||| ||||||||
Sbjct 93848 AACTTCAAGGGTGATGGTTTTTCCAGTGAGCGTCTTCACAAAGATCTGCAT 93898
Score = 84.2 bits (92), Expect = 4e-11
Identities = 129/184 (70%), Gaps = 0/184 (0%)
Strand=Plus/Plus
Query 192354 GATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCT 192413
||| || || || |||| || || | || || | |||||| ||||||||||| | |
Sbjct 92844 GATGTTGTAGTCCGATAGCGTGCGACCGTCCTCGAGTTGTTTTCCAGCAAAGATGAGACG 92903
Query 192414 CTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGA 192473
|||||| ||||| || || || ||||| ||||| ||||| |||||| || || |
Sbjct 92904 CTGTTGGTCAGGCGGAATGCCCTCTTTGTCTTGAATTTTCGCTTTTACGTTCTCAATGGT 92963
Query 192474 ATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTG 192533
|| | || ||||| || || || ||||| || || | ||||| | ||| |||||
Sbjct 92964 GTCGCTTGGCTCAACTTCAAGTGTTATTGTTTTTCCCGTAAGGGTTTTCACAAAAATCTG 93023
Query 192534 CATT 192537
||||
Sbjct 93024 CATT 93027
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 984222076084800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |