Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Varroa_20destructor_20[genbank_20GCA_5F000181155.2_202017-05-09]
20,448 sequences; 331,927,360 total letters
Query= NC_021306.1
Length=75736
Score E
Sequences producing significant alignments: (Bits) Value
seq4655 443 1e-119
seq19061 181 5e-41
>seq4655
Length=4343
Score = 443 bits (490), Expect = 1e-119
Identities = 587/821 (71%), Gaps = 28/821 (3%)
Strand=Plus/Minus
Query 65065 CGTCATTCCCACCGGCTCTATCGCTCTGGACGGCGCTCTGGGCATCGGGGGGTACCCGAG 65124
||| || |||||||| || ||||| ||||||| ||| ||||||||||| ||| || |
Sbjct 3771 CGTGATCCCCACCGGGTCCATCGCGCTGGACGCCGCGCTGGGCATCGGCGGGCTGCCCAA 3712
Query 65125 GGGCCGGGTGGTGGAAATCTACGGCCCAGAATCTTCAGGGAAGTCAACTCTGTGTCTCCA 65184
||||||||| || || ||||||||||| || || || || ||| | ||| | || ||
Sbjct 3711 GGGCCGGGTCGTCGAGATCTACGGCCCGGAGTCCTCGGGCAAGACGACTGTCGCGCTGCA 3652
Query 65185 CGCGGTGGCCAATGCGCAGAAGGCCGGTGGCAACGCCGCCTACATCGACGCTGAGCACTC 65244
||| || ||||| || ||| || || ||| ||||| | ||||||||| |||||| |
Sbjct 3651 CGCCGTCGCCAACGCCCAGGCCGCGGGCGGCGTGGCCGCGTTCATCGACGCGGAGCACGC 3592
Query 65245 CCTGGACCCTGAGTACGCCAAGGCGCTCGGTGTGGACCTCGACAACCTCGTGGTGGTTCA 65304
|||||||| |||||||| ||| ||||| |||||| ||| |||||| | || ||
Sbjct 3591 GCTGGACCCGGAGTACGCGAAGAACCTCGGGGTGGACACCGAGAACCTCCTCGTCTCCCA 3532
Query 65305 GCCGGACACTGGCGAGCAGGCCCTGGAGATCGTTGACCTCCTCGTCAAGTCTGGCGAGCT 65364
||||||||| ||||||||||| ||||||||| ||| | || || || |||| |||
Sbjct 3531 GCCGGACACCGGCGAGCAGGCTTTGGAGATCGCGGACATGCTGATCCGCTCGGGCGCGCT 3472
Query 65365 GTCCATCGTCGTCGTTGACTCTGTGGCGGCCCTGGT------------------------ 65400
| || ||||| | ||||| ||||||||||| ||
Sbjct 3471 CGACGTCATCGTCATCGACTCGGTGGCGGCCCTCGTNNNNNNNNNNNNNNNNNNNNCTCG 3412
Query 65401 -GCCGCGCGCCGAGCTCGAAGGCGACATCGGGGACAGTCACGTCGGCCTGCACGCGCGCC 65459
|||| |||||| |||||||||| || |||||||| |||||||||||||| || || |
Sbjct 3411 TGCCGAAGGCCGAGATCGAAGGCGAGATGGGGGACAGCCACGTCGGCCTGCAGGCCCGGC 3352
Query 65460 TCATGTCGCAGGCCATGCGCAAGCTCACCGGCACCATCTCCAGCACCAACACGCTGACGC 65519
||||| ||||| |||| ||| | ||||| || | || | || |||| | ||
Sbjct 3351 TCATGAGCCAGGCGCTGCGGAAGATGACCGGAGCCTTGAACAACTCCGGCACGACGGCGA 3292
Query 65520 TCTGGGTCAACCAGTTGCGCGAGAAGATCGGCAACGTGGGCTACGGCCCGAACGAGACCA 65579
||| |||||||| ||||||||||||||||| ||| | |||||||| ||||||||
Sbjct 3291 TCTTCATCAACCAGCTGCGCGAGAAGATCGGC---GTGATGTTCGGCCCGACCGAGACCA 3235
Query 65580 CCACGGGCGGCAAGGCTTTGAGGTTCTACGCCTCAGTCCGCATGGATGTCCGTCGCATCG 65639
|||| ||||||||||| ||| ||||||||||| || || |||| || || || ||||
Sbjct 3234 CCACAGGCGGCAAGGCCCTGAAATTCTACGCCTCGGTGCGTTTGGACGTGCGCCGGATCG 3175
Query 65640 CCACCGAGAAGGAAGGCGATGAGGCTGTCGGCAACCGCACCCGGGTGAAGGTCGTCAAGA 65699
||| ||||| ||| || || || | ||||||||||| |||||| |||||||||
Sbjct 3174 AGACCCTCAAGGACGGCTCCGAAGCGGTGGCGAACCGCACCCGCGTGAAGATCGTCAAGA 3115
Query 65700 ACAAGCTGGCCCCGCCGCACCGCAACGCCGAGTTCTCCGTCGTGTACGGGGAGGGCATCT 65759
||||| | ||||||||| | | || |||||| | || | ||||| ||||||
Sbjct 3114 ACAAGGTCGCCCCGCCGTTCAAACAGGCGGAGTTCGACATCATCTACGGCTCCGGCATCA 3055
Query 65760 CGCGTGAGGTCGAACTCCTCGACCTGGCCGTGTCGCAGGGCCTGGTGAAGAAGTCGGGCG 65819
|| |||| | ||| ||||||| | |||| ||| ||| | ||| ||||| || |
Sbjct 3054 GCCGCGAGGGCTCGCTCATCGACCTCGGCGTGGAGCACGGCATCGTGCGCAAGTCCGGGG 2995
Query 65820 CCTGGTTCAAGTACGGGGACAAGAACGTCGCTCAGGGCAAG 65860
|||||| || ||||| || | | ||| |||||||||
Sbjct 2994 CCTGGTACACCTACGGCGATGAACAGCTCGGCCAGGGCAAG 2954
>seq19061
Length=15585
Score = 181 bits (200), Expect = 5e-41
Identities = 228/308 (74%), Gaps = 9/308 (3%)
Strand=Plus/Minus
Query 59516 GTCGGCACCCTGACCGCCGACCCCGAGCTGCGGTTCAC-CCAAGGTGGGCAGGCCGTCGC 59574
||||||| | |||| ||||| ||||||||||||||||| || | | || |||||||||
Sbjct 14188 GTCGGCAACTTGACGGCCGATCCCGAGCTGCGGTTCACACCGACCGGCGC-GGCCGTCGC 14130
Query 59575 CAACTTCACCGTCGTGTCCAACGAACGCCGCCGCGACGCCCAAGGCAAC---TGGGTCGA 59631
||||||||||||| ||| | || | |||| || |||| ||| ||
Sbjct 14129 GAACTTCACCGTCGCGTCGACGCCTCGGACCTTCGACCGTCAGACCAACGAGTGGAAGGA 14070
Query 59632 CGGCGACGCCACATTCCTCCGCTGCACCATCTGGCGCGACGCCGCCGAGAACGTAGCGGA 59691
|||||| || ||| | ||||||| |||||||||||| ||||| |||||||| || ||
Sbjct 14069 CGGCGAAGCGCTGTTCTTGCGCTGCAACATCTGGCGCGAGGCCGCGGAGAACGTGGCCGA 14010
Query 59692 AAGCCT--CCAGAAAGGCCAGCGCGTCATCGTGCATGGCTACCTCAAGCAGCGCTCCTTC 59749
|| |||| ||| ||||||||||||| ||| |||||||||||||| | |
Sbjct 14009 GTCGCTGACCAGG--GGCGCGCGCGTCATCGTGACCGGCAGGCTCAAGCAGCGCTCGTAC 13952
Query 59750 GAGACCAAGGAGGGCGACAAGCGCACCGTCATCGAGGTGGAGGTAGACGAGATCGGCCCG 59809
|||||| |||||||| ||||| |||||| ||||| | || || ||||||||||| ||
Sbjct 13951 GAGACCCGCGAGGGCGAGAAGCGGACCGTCGTCGAGCTCGAAGTCGACGAGATCGGGCCT 13892
Query 59810 TCGCTGCG 59817
|| |||||
Sbjct 13891 TCCCTGCG 13884
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 242170033762016
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