Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Varroa_20destructor_20[genbank_20GCA_5F000181155.2_202017-05-09] 20,448 sequences; 331,927,360 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq19807 147 3e-29 seq17297 102 1e-15 seq1092 102 1e-15 seq973 102 1e-15 seq19684 96.9 4e-14 seq13314 95.1 1e-13 seq1896 91.5 2e-12 >seq19807 Length=15530 Score = 147 bits (162), Expect = 3e-29 Identities = 299/425 (70%), Gaps = 22/425 (5%) Strand=Plus/Minus Query 96654 GCCGAGAACCTCATGATCGTCGACCTGGTGCGCAACGACCTGAGCGTGTGCTGCGCGCCC 96713 || ||||||||||||||||| |||||| | |||||||||||| | | ||||| | | Sbjct 5572 GCGGAGAACCTCATGATCGTGGACCTGCTCCGCAACGACCTGTCCCAGGTCTGCGAGGTC 5513 Query 96714 GGCAGCGTCGTCGTGCCGCCCGGCCGCCTGATGGCGATTGAGACCTACGCCGCCGTGCAC 96773 |||| || |||||| |||| | | |||||||| | |||| ||||||| ||||||| Sbjct 5512 GGCA-CG--GTCGTGACGCC--GAAG-CTGATGGCCGTGGAGAGCTACGCCACCGTGCAT 5459 Query 96774 CAGATGGTGACCACCGT-CGACGGCCTGCT-CGACCGCGGCCGGACGGCGCTCGACCTCG 96831 ||| ||||| |||| || ||| ||| ||| || ||| | | ||| || | ||| | Sbjct 5458 CAGCTGGTGTCCACGGTGCGA-GGCAGGCTGCGGCCGGGAGCAGAC-TCGGTGGACGCGG 5401 Query 96832 TGCGCGCGGCCTTTCCGCCGGGCTCGATGACGGGCGCGCCCAAGGCGCGCAGCATGGAGA 96891 ||||||| ||| || |||||| ||||| |||||||| ||| || | ||||||| Sbjct 5400 TGCGCGCCTGCTTCCCAGGGGGCTCTATGACCGGCGCGCCGAAGAAACGGACGATGGAGA 5341 Query 96892 TTCTCGATCGCCTCGAGAAGCACCGCCCGCGCGGGATCTACTCGGGCGCGCTGGGCtttt 96951 | |||| || ||||| | || | | ||||||| ||||| || || | |||| || Sbjct 5340 TCATCGACCGGCTCGA-AGGCGCGG--CGCGCGGCGTCTACAGCGGTTCGATCGGCTATT 5284 Query 96952 tttCGGCCGACGGCGCCTGCAG-CCTGTCGGTGGTGATCCGCACGGCCGTCATCGACGCG 97010 | | ||||| | | | || | ||| | ||||||||||| |||||| || ||| Sbjct 5283 TCGC-GCCGAACGGGACCGCTGACCTCAATATCGTGATCCGCACCGCCGTCCGGGA-GCG 5226 Query 97011 GACGGCTCGGCG--TCGGTGGGCTGCGGCGGCGCCATCGTCGCCGACTCGGACCCCGACG 97068 |||| |||| ||| |||| |||||||| | ||| ||||| || || | || Sbjct 5225 CTCGGCGTGGCGGATCG--GGGC--GGGCGGCGCGGTGGTCCTGGACTCTGATCCGGTCG 5170 Query 97069 CCGAG 97073 ||||| Sbjct 5169 CCGAG 5165 >seq17297 Length=3878 Score = 102 bits (112), Expect = 1e-15 Identities = 127/174 (73%), Gaps = 0/174 (0%) Strand=Plus/Minus Query 1254375 ACGGCGGTCTGGATCTCGCGCGTGCCGATCGTGTTGCGCTTGTTCGAGTGCGCCAGACGG 1254434 ||||||||||| | ||| || | | ||| || | |||||| |||||| |||||| Sbjct 3411 ACGGCGGTCTGAACCTCCCGAGAGGTGATGGTCGATCTCTTGTTGTAGTGCGAGAGACGG 3352 Query 1254435 CCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATGACCGACATC 1254494 |||||||| |||| | |||| |||||||| || || |||||||| | |||||| Sbjct 3351 GAGGCCTCGGCAGCGATTCTCTCGAAAATGTCGTTTACGAATGAGTTCATAATCGACATG 3292 Query 1254495 GACTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGTAGATG 1254548 | ||| ||||| || ||||||||| || ||||| || |||||||| ||| Sbjct 3291 GCCTTCGACGAGATACCGGTGTCGGGGTGGACTTGCTTAAGGACCTTGTAAATG 3238 >seq1092 Length=2021 Score = 102 bits (112), Expect = 1e-15 Identities = 127/174 (73%), Gaps = 0/174 (0%) Strand=Plus/Minus Query 1254375 ACGGCGGTCTGGATCTCGCGCGTGCCGATCGTGTTGCGCTTGTTCGAGTGCGCCAGACGG 1254434 ||||||||||| | ||| || | | ||| || | |||||| |||||| |||||| Sbjct 804 ACGGCGGTCTGAACCTCCCGAGAGGTGATGGTCGATCTCTTGTTGTAGTGCGAGAGACGG 745 Query 1254435 CCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATGACCGACATC 1254494 |||||||| |||| | |||| |||||||| || || |||||||| | |||||| Sbjct 744 GAGGCCTCGGCAGCGATTCTCTCGAAAATGTCGTTTACGAATGAGTTCATAATCGACATG 685 Query 1254495 GACTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGTAGATG 1254548 | ||| ||||| || ||||||||| || ||||| || |||||||| ||| Sbjct 684 GCCTTCGACGAGATACCGGTGTCGGGGTGGACTTGCTTAAGGACCTTGTAAATG 631 >seq973 Length=50102 Score = 102 bits (112), Expect = 1e-15 Identities = 127/174 (73%), Gaps = 0/174 (0%) Strand=Plus/Minus Query 1254375 ACGGCGGTCTGGATCTCGCGCGTGCCGATCGTGTTGCGCTTGTTCGAGTGCGCCAGACGG 1254434 ||||||||||| | ||| || | | ||| || | |||||| |||||| |||||| Sbjct 807 ACGGCGGTCTGAACCTCCCGAGAGGTGATGGTCGATCTCTTGTTGTAGTGCGAGAGACGG 748 Query 1254435 CCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATGACCGACATC 1254494 |||||||| |||| | |||| |||||||| || || |||||||| | |||||| Sbjct 747 GAGGCCTCGGCAGCGATTCTCTCGAAAATGTCGTTTACGAATGAGTTCATAATCGACATG 688 Query 1254495 GACTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGTAGATG 1254548 | ||| ||||| || ||||||||| || ||||| || |||||||| ||| Sbjct 687 GCCTTCGACGAGATACCGGTGTCGGGGTGGACTTGCTTAAGGACCTTGTAAATG 634 >seq19684 Length=200431 Score = 96.9 bits (106), Expect = 4e-14 Identities = 145/206 (70%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| || || | | | ||| | ||||||||||||| ||| | || || Sbjct 198885 GCTTGGCCAGCTCACCAGGAAGCAGCAGCCTGACGGCGGTCTGGACCTCCCTCGACGTGA 198944 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | || | ||||| |||| | || ||| || |||| |||| | |||| | Sbjct 198945 TGGTCGACCTTTTGTTGTAGTGTGAGAGGCGGGACGCTTCGGCAGCGATCCTTTCGAAGA 199004 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 | ||||| || ||||| ||||||| |||||||| |||| |||||||| ||| |||| Sbjct 199005 TATCGTTCACGAACGAATTCATGATCGACATCGCCTTGGATGAGATGCCGGTGTCCGGGT 199064 Query 1254523 GCACCTGCTTGAGCACCTTGTAGATG 1254548 | |||||||| ||||| ||||| ||| Sbjct 199065 GGACCTGCTTAAGCACTTTGTAAATG 199090 >seq13314 Length=1393 Score = 95.1 bits (104), Expect = 1e-13 Identities = 126/174 (72%), Gaps = 1/174 (1%) Strand=Plus/Minus Query 1254375 ACGGCGGTCTGGATCTCGCGCGTGCCGATCGTGTTGCGCTTGTTCGAGTGCGCCAGACGG 1254434 ||||||||||| | ||| || | | ||| || | |||||| |||||| |||||| Sbjct 180 ACGGCGGTCTGAACCTCCCGAGAGGTGATGGTCGATCTCTTGTTGTAGTGCGAGAGACGG 121 Query 1254435 CCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATGACCGACATC 1254494 |||||||| |||| | |||| |||||||| || || |||||||| | |||||| Sbjct 120 GAGGCCTCGGCAGCGATTCTCTCGAAAATGTCGTTTACGAATGAGTTCATAATCGACATG 61 Query 1254495 GACTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGTAGATG 1254548 | ||| ||||| || ||| ||||| || ||||| || |||||||| ||| Sbjct 60 GCCTTCGACGAGATACCAGTGTC-GGGTGGACTTGCTTAAGGACCTTGTAAATG 8 >seq1896 Length=13079 Score = 91.5 bits (100), Expect = 2e-12 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 1254346 TGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGATCG 1254405 |||||||||| || | | | || | ||||| ||||| | ||| || | | ||| | Sbjct 9549 TGGCCAGTTCACCAGGTAGCAGTAGCCTAACGGCAGTCTGAACCTCTCGAGAGGTGATGG 9608 Query 1254406 TGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCATGT 1254465 | | |||||| | || | ||||||| |||||||| | || | |||| |||| Sbjct 9609 TCGACCTCTTGTTATAATGAGACAGACGGGAGGCCTCGGCAGCAATTCTCTCGAAGATGT 9668 Query 1254466 CGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGTGCA 1254525 |||| |||||||||||||||| ||||| | || ||| || || ||||| || | Sbjct 9669 CGTTAACAAACGAGTTCATGATTGACATGGCTTTCGAGGAAATTCCGGTATCGGGATGGA 9728 Query 1254526 CCTGCTTGAGCACCTTGTAGATG 1254548 |||| ||||| || ||||||||| Sbjct 9729 CCTGTTTGAGGACTTTGTAGATG 9751 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6105461141362016