Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Varroa_20destructor_20[genbank_20GCA_5F000181155.2_202017-05-09] 20,448 sequences; 331,927,360 total letters Query= NC_021924.1 Length=129052 Score E Sequences producing significant alignments: (Bits) Value seq2890 118 9e-22 seq19980 104 2e-17 seq7231 93.3 3e-14 >seq2890 Length=41629 Score = 118 bits (130), Expect = 9e-22 Identities = 145/198 (73%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 34408 CCGTTGACGATGAATCGTTCGTTTTTGTAATCGACCTGCGTTTGCGCGCCCAGCTCGCAC 34467 ||||| ||||| | || || || || | |||| ||| || |||| || |||||||| Sbjct 40005 CCGTTCACGATATAGCGATCTTTCTTCGAGTCGAACTGGGTCTGCGAACCAAGCTCGCAT 39946 Query 34468 CCGAAGTACTTTGTCGGGTAAATGGCCGGACGTCCAAGCGCCTTGGCGATTTCGGGCATG 34527 || || |||||||| || || | | |||||| | || ||||| || || || ||| Sbjct 39945 CCAAAATACTTTGTGGGATAGGTCGGCGGACGGCTGAGTGCCTTAGCAATGTCACTCATA 39886 Query 34528 TTGACGATGACAGTCTTGATGCCGTTGCCCTTTCCTTCGACCTTGGCGCAGATGCGCGGC 34587 |||||||| |||||||||||||| ||||| ||||| || |||||||| | ||| Sbjct 39885 TTGACGATCACAGTCTTGATGCCATTGCCTTTTCCCTCTACCTTGGCAATCAACTTAGGC 39826 Query 34588 ATTTTGTAGCGGTAGAAC 34605 || ||||| || |||||| Sbjct 39825 ATCTTGTAACGATAGAAC 39808 >seq19980 Length=299602 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 ||||| || ||||| ||||| | ||||| ||||| || || | ||| ||||| | Sbjct 144964 ATGCAGATTTTTGTTAAAACGCTTACCGGAAAAACGATCACTCTTGAAGTCGAGCCAAGC 145023 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 ||||| | | | || ||| || ||| ||||| ||||| | ||| |||||| Sbjct 145024 GATACGATTGAGAACGTTAAAGCCAAAATTCAAGACAAGGAAGGAATTCCCCCCGATCAA 145083 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 ||||| | |||| || || |||||||| ||||||| | || | | || |||||| Sbjct 145084 CAAAGGTTGATTTTCGCAGGCAAACAGCTCGAGGATGGTCGCACGCTCTCCGACTACAAC 145143 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGG 110499 ||||||||||| ||||| | || ||||| | ||||| ||||| || Sbjct 145144 ATTCAAAAAGAGTCTACCCTTCATCTGGTGCTGAGACTCCGAGGAGG 145190 Score = 89.7 bits (98), Expect = 4e-13 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 110271 AAATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTG 110330 |||||||||| ||||| |||||||||||||| || || || ||| | || |||| || Sbjct 144278 AAATGCAAATTTTTGTGAAAACTTTAACCGGAAAGACTATCACCCTTGAGGTGGAGTCTT 144337 Query 110331 ACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATC 110390 ||||| ||| | || || ||||||| || || || || | ||| || | Sbjct 144338 CTGATACAATCGAAAATGTCAAGGCGAAGATTCAAGATAAGGAGGGGATTCCCCCAGACC 144397 Query 110391 AACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACA 110450 | || || | || | ||| ||||||||| |||| || | | || | | ||||||| Sbjct 144398 AGCAGAGGTTAATCTTTGCTGGTAAACAGTTGGAAGACGGACGTACTCTTTCTGATTACA 144457 Query 110451 ACATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGG 110499 |||| || |||||||| || | || | || || | |||||||| || Sbjct 144458 ACATCCAGAAAGAATCGACCCTTCATCTTGTCTTGCGTCTGCGAGGTGG 144506 >seq7231 Length=219762 Score = 93.3 bits (102), Expect = 3e-14 Identities = 145/205 (71%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAA-CGGAGCCTGA 110331 |||||||| || || || ||||| || || || ||||||||| | || || | ||| | Sbjct 92798 ATGCAAATCTTCGTAAAGACTTTGACGGGGAAGACCATTACCTTGGAGGTCGAACCCTCA 92739 Query 110332 CGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCA 110391 ||||| ||| | || || ||| ||| ||||| ||||| | || || || Sbjct 92738 -GATACCATCGAGAACGTGAAGGCGAAAATTCAGGACAAGGAAGGTATCCCGCCTGACCA 92680 Query 110392 ACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAA 110451 || || | || | ||||||||||||||| ||||| | |||||| || | || ||||| Sbjct 92679 GCAGCGATTGATCTTTGCGGGTAAACAGCTCGAGGACGGTAGAACACTGTCAGACTACAA 92620 Query 110452 CATTCAAAAAGAATCTACGTTGCAC 110476 ||| || |||||||| ||| | ||| Sbjct 92619 CATCCAGAAAGAATCAACGCTCCAC 92595 Score = 82.4 bits (90), Expect = 6e-11 Identities = 101/138 (73%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 110366 GACAAAGAAGGCGTGCCCGTGGATCAACAAAGACTTATTTATGCGGGTAAACAGCTGGAG 110425 ||||||||||| | || |||||||| || || |||| ||| ||||||||||| || Sbjct 100113 GACAAAGAAGGAATCCCTCCTGATCAACAGAGGCTAATTTTTGCTGGTAAACAGCTCGAA 100054 Query 110426 GATGCCAGAACAATGGCGGATTACAACATTCAAAAAGAATCTACGTTGCACATGGTGTTA 110485 |||| | || | | || || |||||||| ||||| ||||| | || ||||| | Sbjct 100053 GATGGTCGTACTCTATCTGACTATAACATTCAGAAAGAGTCTACTCTTCATCTGGTGCTC 99994 Query 110486 AGACTGCGAGGGGGAAAA 110503 ||||| || || |||||| Sbjct 99993 AGACTCCGCGGAGGAAAA 99976 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 412738715744864