Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Varroa_20destructor_20[genbank_20GCA_5F000181155.2_202017-05-09]
20,448 sequences; 331,927,360 total letters
Query= NC_021924.1
Length=129052
Score E
Sequences producing significant alignments: (Bits) Value
seq2890 118 9e-22
seq19980 104 2e-17
seq7231 93.3 3e-14
>seq2890
Length=41629
Score = 118 bits (130), Expect = 9e-22
Identities = 145/198 (73%), Gaps = 0/198 (0%)
Strand=Plus/Minus
Query 34408 CCGTTGACGATGAATCGTTCGTTTTTGTAATCGACCTGCGTTTGCGCGCCCAGCTCGCAC 34467
||||| ||||| | || || || || | |||| ||| || |||| || ||||||||
Sbjct 40005 CCGTTCACGATATAGCGATCTTTCTTCGAGTCGAACTGGGTCTGCGAACCAAGCTCGCAT 39946
Query 34468 CCGAAGTACTTTGTCGGGTAAATGGCCGGACGTCCAAGCGCCTTGGCGATTTCGGGCATG 34527
|| || |||||||| || || | | |||||| | || ||||| || || || |||
Sbjct 39945 CCAAAATACTTTGTGGGATAGGTCGGCGGACGGCTGAGTGCCTTAGCAATGTCACTCATA 39886
Query 34528 TTGACGATGACAGTCTTGATGCCGTTGCCCTTTCCTTCGACCTTGGCGCAGATGCGCGGC 34587
|||||||| |||||||||||||| ||||| ||||| || |||||||| | |||
Sbjct 39885 TTGACGATCACAGTCTTGATGCCATTGCCTTTTCCCTCTACCTTGGCAATCAACTTAGGC 39826
Query 34588 ATTTTGTAGCGGTAGAAC 34605
|| ||||| || ||||||
Sbjct 39825 ATCTTGTAACGATAGAAC 39808
>seq19980
Length=299602
Score = 104 bits (114), Expect = 2e-17
Identities = 159/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332
||||| || ||||| ||||| | ||||| ||||| || || | ||| ||||| |
Sbjct 144964 ATGCAGATTTTTGTTAAAACGCTTACCGGAAAAACGATCACTCTTGAAGTCGAGCCAAGC 145023
Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392
||||| | | | || ||| || ||| ||||| ||||| | ||| ||||||
Sbjct 145024 GATACGATTGAGAACGTTAAAGCCAAAATTCAAGACAAGGAAGGAATTCCCCCCGATCAA 145083
Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452
||||| | |||| || || |||||||| ||||||| | || | | || ||||||
Sbjct 145084 CAAAGGTTGATTTTCGCAGGCAAACAGCTCGAGGATGGTCGCACGCTCTCCGACTACAAC 145143
Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGG 110499
||||||||||| ||||| | || ||||| | ||||| ||||| ||
Sbjct 145144 ATTCAAAAAGAGTCTACCCTTCATCTGGTGCTGAGACTCCGAGGAGG 145190
Score = 89.7 bits (98), Expect = 4e-13
Identities = 157/229 (69%), Gaps = 0/229 (0%)
Strand=Plus/Plus
Query 110271 AAATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTG 110330
|||||||||| ||||| |||||||||||||| || || || ||| | || |||| ||
Sbjct 144278 AAATGCAAATTTTTGTGAAAACTTTAACCGGAAAGACTATCACCCTTGAGGTGGAGTCTT 144337
Query 110331 ACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATC 110390
||||| ||| | || || ||||||| || || || || | ||| || |
Sbjct 144338 CTGATACAATCGAAAATGTCAAGGCGAAGATTCAAGATAAGGAGGGGATTCCCCCAGACC 144397
Query 110391 AACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACA 110450
| || || | || | ||| ||||||||| |||| || | | || | | |||||||
Sbjct 144398 AGCAGAGGTTAATCTTTGCTGGTAAACAGTTGGAAGACGGACGTACTCTTTCTGATTACA 144457
Query 110451 ACATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGG 110499
|||| || |||||||| || | || | || || | |||||||| ||
Sbjct 144458 ACATCCAGAAAGAATCGACCCTTCATCTTGTCTTGCGTCTGCGAGGTGG 144506
>seq7231
Length=219762
Score = 93.3 bits (102), Expect = 3e-14
Identities = 145/205 (71%), Gaps = 2/205 (1%)
Strand=Plus/Minus
Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAA-CGGAGCCTGA 110331
|||||||| || || || ||||| || || || ||||||||| | || || | ||| |
Sbjct 92798 ATGCAAATCTTCGTAAAGACTTTGACGGGGAAGACCATTACCTTGGAGGTCGAACCCTCA 92739
Query 110332 CGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCA 110391
||||| ||| | || || ||| ||| ||||| ||||| | || || ||
Sbjct 92738 -GATACCATCGAGAACGTGAAGGCGAAAATTCAGGACAAGGAAGGTATCCCGCCTGACCA 92680
Query 110392 ACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAA 110451
|| || | || | ||||||||||||||| ||||| | |||||| || | || |||||
Sbjct 92679 GCAGCGATTGATCTTTGCGGGTAAACAGCTCGAGGACGGTAGAACACTGTCAGACTACAA 92620
Query 110452 CATTCAAAAAGAATCTACGTTGCAC 110476
||| || |||||||| ||| | |||
Sbjct 92619 CATCCAGAAAGAATCAACGCTCCAC 92595
Score = 82.4 bits (90), Expect = 6e-11
Identities = 101/138 (73%), Gaps = 0/138 (0%)
Strand=Plus/Minus
Query 110366 GACAAAGAAGGCGTGCCCGTGGATCAACAAAGACTTATTTATGCGGGTAAACAGCTGGAG 110425
||||||||||| | || |||||||| || || |||| ||| ||||||||||| ||
Sbjct 100113 GACAAAGAAGGAATCCCTCCTGATCAACAGAGGCTAATTTTTGCTGGTAAACAGCTCGAA 100054
Query 110426 GATGCCAGAACAATGGCGGATTACAACATTCAAAAAGAATCTACGTTGCACATGGTGTTA 110485
|||| | || | | || || |||||||| ||||| ||||| | || ||||| |
Sbjct 100053 GATGGTCGTACTCTATCTGACTATAACATTCAGAAAGAGTCTACTCTTCATCTGGTGCTC 99994
Query 110486 AGACTGCGAGGGGGAAAA 110503
||||| || || ||||||
Sbjct 99993 AGACTCCGCGGAGGAAAA 99976
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 412738715744864
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |