Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Varroa_20destructor_20[genbank_20GCA_5F000181155.2_202017-05-09]
20,448 sequences; 331,927,360 total letters
Query= NC_022059.1
Length=77367
Score E
Sequences producing significant alignments: (Bits) Value
seq4655 378 4e-100
seq19061 181 5e-41
>seq4655
Length=4343
Score = 378 bits (418), Expect = 4e-100
Identities = 575/820 (70%), Gaps = 34/820 (4%)
Strand=Plus/Minus
Query 67568 ATTCCCACCGGCTCGATAGCTCTGGACGCCGCTCTCGGCATCGGGGGGTATCCGAGGGGC 67627
|| |||||||| || || || ||||||||||| || |||||||| ||| || | ||||
Sbjct 3767 ATCCCCACCGGGTCCATCGCGCTGGACGCCGCGCTGGGCATCGGCGGGCTGCCCAAGGGC 3708
Query 67628 CGGGTAGTGGAGATCTACGGTCCTGAGTCTTCAGGGAAGTCAAC-GTTGTGCCTCCACGC 67686
||||| || ||||||||||| || ||||| || || ||| | || || | || | |||||
Sbjct 3707 CGGGTCGTCGAGATCTACGGCCCGGAGTCCTCGGGCAAGACGACTGTCGCGC-TGCACGC 3649
Query 67687 GGTGGCCAATGCCCAGAAGGCCGGTGGCAACGCCGCCTACATCGACGCCGAACATTCTCT 67746
|| ||||| |||||| || || ||| ||||| | ||||||||| || || | ||
Sbjct 3648 CGTCGCCAACGCCCAGGCCGCGGGCGGCGTGGCCGCGTTCATCGACGCGGAGCACGCGCT 3589
Query 67747 CGACCCTGAGTACGCCGCGGCGCTCGGGGTGGATGTCGACAATCTCGTGGTTGTGCAGCC 67806
||||| |||||||| | ||||||||||| ||| || ||| | || |||||
Sbjct 3588 GGACCCGGAGTACGCGAAGAACCTCGGGGTGGACACCGAGAACCTCCTCGTCTCCCAGCC 3529
Query 67807 AGACACTGGCGAGCAGGCCCTGGAGATCGTTGACCTTCTCGTCAAGTCTGGCGAGGTTTC 67866
||||| ||||||||||| ||||||||| ||| | || || || |||| | |
Sbjct 3528 GGACACCGGCGAGCAGGCTTTGGAGATCGCGGACATGCTGATCCGCTCGGGCGCGCTCGA 3469
Query 67867 CATCATCGTTGTGGACTCTGTGGCGGCCCTGGT-------------------------GC 67901
| ||||||| | ||||| ||||||||||| || ||
Sbjct 3468 CGTCATCGTCATCGACTCGGTGGCGGCCCTCGTNNNNNNNNNNNNNNNNNNNNCTCGTGC 3409
Query 67902 CGCGGGCGGAGCTCGAAGGGGACATCGGGGACTCGCACGTCGGCCTGCATGCCCGCCTGA 67961
|| ||| ||| ||||||| || || |||||| |||||||||||||| ||||| || |
Sbjct 3408 CGAAGGCCGAGATCGAAGGCGAGATGGGGGACAGCCACGTCGGCCTGCAGGCCCGGCTCA 3349
Query 67962 TGTCTCAGGCCATGCGCAAGCTGACCGGCACGATTGCCAGCACCAACACGCTCACCCTGT 68021
|| ||||| |||| ||| ||||||| | | || | || |||| | | |
Sbjct 3348 TGAGCCAGGCGCTGCGGAAGATGACCGGAGCCTTGAACAACTCCGGCACGACGGCGATCT 3289
Query 68022 GGGTGAATCAGCTGCGCGAGAAGATCGGCAACGTGGGCTACGGCCCGAATGAGACCACCA 68081
| || ||||||||||||||||||||| ||| | |||||||| ||||||||||
Sbjct 3288 TCATCAACCAGCTGCGCGAGAAGATCGGC---GTGATGTTCGGCCCGACCGAGACCACCA 3232
Query 68082 CCGGTGGTAAGGCTCTGCGCTTCTACGCCTCGGTGCGTATGGATGTCCGCAGGATCGCCA 68141
| || || ||||| ||| |||||||||||||||||| |||| || ||| |||||| |
Sbjct 3231 CAGGCGGCAAGGCCCTGAAATTCTACGCCTCGGTGCGTTTGGACGTGCGCCGGATCGAGA 3172
Query 68142 CCGAGAAGGAAGGCGATGAGGCTGTCGGCAACCGCACGCGCGTGAAGGTTGTCAAGAACA 68201
|| ||||| ||| || || || | |||||||| ||||||||| | ||||||||||
Sbjct 3171 CCCTCAAGGACGGCTCCGAAGCGGTGGCGAACCGCACCCGCGTGAAGATCGTCAAGAACA 3112
Query 68202 AGCTGGCGCCTCCGCACCGCCAGGCTGAGTTTTCCATCGTCTACGGCGAGGGCATTTCCC 68261
|| | || || ||| | ||||| ||||| |||| |||||||| ||||| ||
Sbjct 3111 AGGTCGCCCCGCCGTTCAAACAGGCGGAGTTCGACATCATCTACGGCTCCGGCATCAGCC 3052
Query 68262 GCGAGGCCGAACTCCTCGACATGGCCGTTTCCCGAGGGCTCATCAAGAAGTCTGGGGCCT 68321
|||||| | ||| ||||| | | ||| | || || | ||||| |||||||
Sbjct 3051 GCGAGGGCTCGCTCATCGACCTCGGCGTGGAGCACGGCATCGTGCGCAAGTCCGGGGCCT 2992
Query 68322 GGTTCAAGTACGGGGACAAGAACA--TCGGCCAGGGCAAG 68359
||| || ||||| | | ||||| ||||||||||||||
Sbjct 2991 GGTACACCTACGGCG--ATGAACAGCTCGGCCAGGGCAAG 2954
>seq19061
Length=15585
Score = 181 bits (200), Expect = 5e-41
Identities = 228/308 (74%), Gaps = 9/308 (3%)
Strand=Plus/Minus
Query 60958 GTCGGCACCCTGACCGCCGACCCCGAGCTGCGGTTCAC-CCAAGGTGGGCAGGCCGTCGC 61016
||||||| | |||| ||||| ||||||||||||||||| || | | || |||||||||
Sbjct 14188 GTCGGCAACTTGACGGCCGATCCCGAGCTGCGGTTCACACCGACCGGCGC-GGCCGTCGC 14130
Query 61017 CAACTTCACCGTCGTGTCCAACGAACGCCGCCGCGACGCCCAGGGCAAC---TGGGTCGA 61073
||||||||||||| ||| | || | |||| ||| |||| ||| ||
Sbjct 14129 GAACTTCACCGTCGCGTCGACGCCTCGGACCTTCGACCGTCAGACCAACGAGTGGAAGGA 14070
Query 61074 CGGCGACGCCACATTCCTCCGCTGCACCATCTGGCGCGACGCCGCCGAGAACGTAGCGGA 61133
|||||| || ||| | ||||||| |||||||||||| ||||| |||||||| || ||
Sbjct 14069 CGGCGAAGCGCTGTTCTTGCGCTGCAACATCTGGCGCGAGGCCGCGGAGAACGTGGCCGA 14010
Query 61134 AAGCCT--CCAGAAAGGCCAGCGCGTCATCGTGCATGGCTACCTCAAGCAGCGCTCCTTC 61191
|| |||| ||| ||||||||||||| ||| |||||||||||||| | |
Sbjct 14009 GTCGCTGACCAGG--GGCGCGCGCGTCATCGTGACCGGCAGGCTCAAGCAGCGCTCGTAC 13952
Query 61192 GAGACCAAGGAAGGCGACAAGCGCACCGTCATCGAGGTGGAGGTAGACGAGATCGGCCCG 61251
|||||| || ||||| ||||| |||||| ||||| | || || ||||||||||| ||
Sbjct 13951 GAGACCCGCGAGGGCGAGAAGCGGACCGTCGTCGAGCTCGAAGTCGACGAGATCGGGCCT 13892
Query 61252 TCGCTGCG 61259
|| |||||
Sbjct 13891 TCCCTGCG 13884
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 247387933085184
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |