Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Varroa_20destructor_20[genbank_20GCA_5F000181155.2_202017-05-09] 20,448 sequences; 331,927,360 total letters Query= NC_022066.1 Length=108297 Score E Sequences producing significant alignments: (Bits) Value seq7279 212 4e-50 >seq7279 Length=10654 Score = 212 bits (234), Expect = 4e-50 Identities = 334/470 (71%), Gaps = 9/470 (2%) Strand=Plus/Plus Query 38437 GACCCGTTCTGGCCGGGTAACCGGGATAAGGCCCGCGCCGCCGGCCTGATCCTGGCGGGC 38496 ||| | || ||||||||| ||| | ||||| | | |||||| | ||||||||| Sbjct 7534 GACGCCTTATGGCCGGGTTTCCGCGCCCAGGCCGGGGAGCAAGGCCTGCTGCTGGCGGGC 7593 Query 38497 TATCACTACGTCCGCACGGGCGAC--CCTGCT-GCGCAGGCAAAAACCTTCGTGGAGCAC 38553 || |||||| ||||| | | |||| || || | |||||| | |||||||||| |||| Sbjct 7594 TACCACTACATCCGCGCCGACGACGACCCGCGCGAGCAGGCCGAGACCTTCGTGGGGCAC 7653 Query 38554 CTGGGGGATAAGTCCATCCCCGCCATGTTGGATTTTGAGGACGGCTCGGGGAACATCGAG 38613 || | || | | | ||||| ||| | ||||| ||||||||||| ||| | |||| Sbjct 7654 CTCGCCGACCTGACGACGCCCGCGATGCTCGATTTCGAGGACGGCTCCGGGGATATCGGC 7713 Query 38614 CAGTTCTGGGCGGTGAAGAACGAGATCGAAAAGCTCGGCGTCCAG-GTCCGCCTGTCCTA 38672 ||||||||| ||| ||||||||||| ||||||| | || ||||| || ||||| Sbjct 7714 GTGTTCTGGGCCGTGCGCGACGAGATCGAAGCCCTCGGCG-CGAGCGTCCGGCTCTCCTA 7772 Query 38673 CATTCCTGACTGGTACTGGGAGCGCATCGGAAAGCCGGACCTGTCCAAGGTCCCTGGTCT 38732 ||| || | ||||||||||||| ||||||| || ||| | | | ||| || || Sbjct 7773 CATCCCCGGCTGGTACTGGGAGAGCATCGGCTCCCCCGACATCACTGGAGCCCCCGGCCT 7832 Query 38733 GATCTCATCCGAATACGTCAGCGGAACCGGATACGCATCGGTGCTATATC--CGGGTAAT 38790 || |||| ||||||| ||| |||| |||| || | || |||| | || | Sbjct 7833 CGTCCAATCCCGCTACGTCACCGGCTCCGGCGACGCCTCCGCCCTCTATCAGCAAGT-GT 7891 Query 38791 TCAAGCAACTTCTGGAAAGCGTACGGCGGCCGGACGCCCGACGTCCTGCAATTCACCGAC 38850 | || | | | ||| | | ||||||||| || |||| |||||| |||||||||||| Sbjct 7892 CCGAGGAGC-TGTGGGAGCCCTACGGCGGCGCGAGCCCCGTCGTCCTCCAATTCACCGAC 7950 Query 38851 AGGGCCCTTGTGGCTGGCAAGTCGGTCGACGCTAACGCTTTCCGGGGAAC 38900 | |||||||| || || || | ||||||| ||||| ||||||||||| Sbjct 7951 CGAGCCCTTGTCGCCGGGAACACCCTCGACGCCAACGCCTTCCGGGGAAC 8000 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 346339267276224