Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Varroa_20destructor_20[genbank_20GCA_5F000181155.2_202017-05-09]
20,448 sequences; 331,927,360 total letters
Query= NC_022085.1
Length=76483
Score E
Sequences producing significant alignments: (Bits) Value
seq4655 446 8e-121
seq19061 185 4e-42
>seq4655
Length=4343
Score = 446 bits (494), Expect = 8e-121
Identities = 588/821 (72%), Gaps = 28/821 (3%)
Strand=Plus/Minus
Query 66147 CGTCATTCCCACCGGCTCTATCGCTCTGGACGGCGCTCTGGGCATCGGGGGGTACCCGAG 66206
||| || |||||||| || ||||| ||||||| ||| ||||||||||| ||| || |
Sbjct 3771 CGTGATCCCCACCGGGTCCATCGCGCTGGACGCCGCGCTGGGCATCGGCGGGCTGCCCAA 3712
Query 66207 GGGCCGGGTGGTGGAAATCTACGGCCCAGAATCTTCAGGGAAGTCAACTCTGTGTCTCCA 66266
||||||||| || || ||||||||||| || || || || ||| | ||| | || ||
Sbjct 3711 GGGCCGGGTCGTCGAGATCTACGGCCCGGAGTCCTCGGGCAAGACGACTGTCGCGCTGCA 3652
Query 66267 CGCGGTGGCCAATGCGCAGAAGGCCGGTGGCAACGCCGCCTACATCGACGCTGAGCACTC 66326
||| || ||||| || ||| || || ||| ||||| | ||||||||| |||||| |
Sbjct 3651 CGCCGTCGCCAACGCCCAGGCCGCGGGCGGCGTGGCCGCGTTCATCGACGCGGAGCACGC 3592
Query 66327 CCTGGACCCTGAGTACGCCAAGGCGCTCGGTGTGGACCTCGACAACCTCGTGGTGGTTCA 66386
|||||||| |||||||| ||| ||||| |||||| ||| |||||| | || ||
Sbjct 3591 GCTGGACCCGGAGTACGCGAAGAACCTCGGGGTGGACACCGAGAACCTCCTCGTCTCCCA 3532
Query 66387 GCCGGACACTGGCGAGCAGGCCCTGGAGATCGTTGACCTCCTCGTCAAGTCTGGCGAGCT 66446
||||||||| ||||||||||| ||||||||| ||| | || || || |||| |||
Sbjct 3531 GCCGGACACCGGCGAGCAGGCTTTGGAGATCGCGGACATGCTGATCCGCTCGGGCGCGCT 3472
Query 66447 GTCCATCGTCGTCGTTGACTCTGTGGCGGCCCTGGT------------------------ 66482
| || ||||| | ||||| ||||||||||| ||
Sbjct 3471 CGACGTCATCGTCATCGACTCGGTGGCGGCCCTCGTNNNNNNNNNNNNNNNNNNNNCTCG 3412
Query 66483 -GCCGCGCGCCGAGCTCGAAGGCGACATCGGGGACAGTCACGTCGGCCTGCACGCGCGCC 66541
|||| |||||| |||||||||| || |||||||| |||||||||||||| || || |
Sbjct 3411 TGCCGAAGGCCGAGATCGAAGGCGAGATGGGGGACAGCCACGTCGGCCTGCAGGCCCGGC 3352
Query 66542 TCATGTCGCAGGCCATGCGCAAGCTCACCGGCACCATCTCCAGCACCAACACGCTGACGC 66601
||||| ||||| |||| ||| | ||||| || | || | || |||| | ||
Sbjct 3351 TCATGAGCCAGGCGCTGCGGAAGATGACCGGAGCCTTGAACAACTCCGGCACGACGGCGA 3292
Query 66602 TCTGGGTCAACCAGTTGCGCGAGAAGATCGGCAACGTGGGCTACGGCCCGAACGAGACCA 66661
||| |||||||| ||||||||||||||||| ||| | |||||||| ||||||||
Sbjct 3291 TCTTCATCAACCAGCTGCGCGAGAAGATCGGC---GTGATGTTCGGCCCGACCGAGACCA 3235
Query 66662 CCACGGGCGGCAAGGCTTTGAGGTTCTACGCCTCAGTCCGCATGGATGTCCGTCGCATCG 66721
|||| ||||||||||| ||| ||||||||||| || || |||| || || || ||||
Sbjct 3234 CCACAGGCGGCAAGGCCCTGAAATTCTACGCCTCGGTGCGTTTGGACGTGCGCCGGATCG 3175
Query 66722 CCACCGAGAAGGAAGGCGATGAGGCTGTCGGCAACCGCACCCGGGTGAAGGTCGTCAAGA 66781
||| ||||| ||| || || || | ||||||||||| |||||| |||||||||
Sbjct 3174 AGACCCTCAAGGACGGCTCCGAAGCGGTGGCGAACCGCACCCGCGTGAAGATCGTCAAGA 3115
Query 66782 ACAAGCTGGCCCCGCCGCACCGCAACGCCGAGTTCTCCGTCGTGTACGGGGAGGGCATCT 66841
||||| | ||||||||| | | || |||||| | || | ||||| ||||||
Sbjct 3114 ACAAGGTCGCCCCGCCGTTCAAACAGGCGGAGTTCGACATCATCTACGGCTCCGGCATCA 3055
Query 66842 CGCGTGAGGTCGAACTCCTCGACCTGGCCGTGTCGCAGGGCCTGGTGAAGAAGTCGGGCG 66901
|| |||| | ||| ||||||| | |||| ||| ||| | ||| ||||| || |
Sbjct 3054 GCCGCGAGGGCTCGCTCATCGACCTCGGCGTGGAGCACGGCATCGTGCGCAAGTCCGGGG 2995
Query 66902 CCTGGTTCAAGTACGGGGACAAGAACGTCGCCCAGGGCAAG 66942
|||||| || ||||| || | | ||| ||||||||||
Sbjct 2994 CCTGGTACACCTACGGCGATGAACAGCTCGGCCAGGGCAAG 2954
>seq19061
Length=15585
Score = 185 bits (204), Expect = 4e-42
Identities = 229/308 (74%), Gaps = 9/308 (3%)
Strand=Plus/Minus
Query 59820 GTCGGCACCCTGACCGCCGACCCCGAGCTGCGGTTCAC-CCAAGGTGGGCAGGCCGTCGC 59878
||||||| | |||| ||||| ||||||||||||||||| || | | || |||||||||
Sbjct 14188 GTCGGCAACTTGACGGCCGATCCCGAGCTGCGGTTCACACCGACCGGCGC-GGCCGTCGC 14130
Query 59879 CAACTTCACCGTCGTGTCCAACGAACGCCGCCGCGACGCCCAAGGCAAC---TGGGTCGA 59935
||||||||||||| ||| | || | |||| || |||| ||| ||
Sbjct 14129 GAACTTCACCGTCGCGTCGACGCCTCGGACCTTCGACCGTCAGACCAACGAGTGGAAGGA 14070
Query 59936 CGGCGACGCCACATTCCTCCGCTGCACCATCTGGCGCGACGCCGCCGAGAACGTGGCGGA 59995
|||||| || ||| | ||||||| |||||||||||| ||||| ||||||||||| ||
Sbjct 14069 CGGCGAAGCGCTGTTCTTGCGCTGCAACATCTGGCGCGAGGCCGCGGAGAACGTGGCCGA 14010
Query 59996 AAGCCT--CCAGAAAGGCCAGCGCGTCATCGTGCATGGCTACCTCAAGCAGCGCTCCTTC 60053
|| |||| ||| ||||||||||||| ||| |||||||||||||| | |
Sbjct 14009 GTCGCTGACCAGG--GGCGCGCGCGTCATCGTGACCGGCAGGCTCAAGCAGCGCTCGTAC 13952
Query 60054 GAGACCAAGGAGGGCGACAAGCGCACCGTCATCGAGGTGGAGGTAGACGAGATCGGCCCG 60113
|||||| |||||||| ||||| |||||| ||||| | || || ||||||||||| ||
Sbjct 13951 GAGACCCGCGAGGGCGAGAAGCGGACCGTCGTCGAGCTCGAAGTCGACGAGATCGGGCCT 13892
Query 60114 TCGCTGCG 60121
|| |||||
Sbjct 13891 TCCCTGCG 13884
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 244559838050432
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |