Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Varroa_20destructor_20[genbank_20GCA_5F000181155.2_202017-05-09] 20,448 sequences; 331,927,360 total letters Query= NC_022085.1 Length=76483 Score E Sequences producing significant alignments: (Bits) Value seq4655 446 8e-121 seq19061 185 4e-42 >seq4655 Length=4343 Score = 446 bits (494), Expect = 8e-121 Identities = 588/821 (72%), Gaps = 28/821 (3%) Strand=Plus/Minus Query 66147 CGTCATTCCCACCGGCTCTATCGCTCTGGACGGCGCTCTGGGCATCGGGGGGTACCCGAG 66206 ||| || |||||||| || ||||| ||||||| ||| ||||||||||| ||| || | Sbjct 3771 CGTGATCCCCACCGGGTCCATCGCGCTGGACGCCGCGCTGGGCATCGGCGGGCTGCCCAA 3712 Query 66207 GGGCCGGGTGGTGGAAATCTACGGCCCAGAATCTTCAGGGAAGTCAACTCTGTGTCTCCA 66266 ||||||||| || || ||||||||||| || || || || ||| | ||| | || || Sbjct 3711 GGGCCGGGTCGTCGAGATCTACGGCCCGGAGTCCTCGGGCAAGACGACTGTCGCGCTGCA 3652 Query 66267 CGCGGTGGCCAATGCGCAGAAGGCCGGTGGCAACGCCGCCTACATCGACGCTGAGCACTC 66326 ||| || ||||| || ||| || || ||| ||||| | ||||||||| |||||| | Sbjct 3651 CGCCGTCGCCAACGCCCAGGCCGCGGGCGGCGTGGCCGCGTTCATCGACGCGGAGCACGC 3592 Query 66327 CCTGGACCCTGAGTACGCCAAGGCGCTCGGTGTGGACCTCGACAACCTCGTGGTGGTTCA 66386 |||||||| |||||||| ||| ||||| |||||| ||| |||||| | || || Sbjct 3591 GCTGGACCCGGAGTACGCGAAGAACCTCGGGGTGGACACCGAGAACCTCCTCGTCTCCCA 3532 Query 66387 GCCGGACACTGGCGAGCAGGCCCTGGAGATCGTTGACCTCCTCGTCAAGTCTGGCGAGCT 66446 ||||||||| ||||||||||| ||||||||| ||| | || || || |||| ||| Sbjct 3531 GCCGGACACCGGCGAGCAGGCTTTGGAGATCGCGGACATGCTGATCCGCTCGGGCGCGCT 3472 Query 66447 GTCCATCGTCGTCGTTGACTCTGTGGCGGCCCTGGT------------------------ 66482 | || ||||| | ||||| ||||||||||| || Sbjct 3471 CGACGTCATCGTCATCGACTCGGTGGCGGCCCTCGTNNNNNNNNNNNNNNNNNNNNCTCG 3412 Query 66483 -GCCGCGCGCCGAGCTCGAAGGCGACATCGGGGACAGTCACGTCGGCCTGCACGCGCGCC 66541 |||| |||||| |||||||||| || |||||||| |||||||||||||| || || | Sbjct 3411 TGCCGAAGGCCGAGATCGAAGGCGAGATGGGGGACAGCCACGTCGGCCTGCAGGCCCGGC 3352 Query 66542 TCATGTCGCAGGCCATGCGCAAGCTCACCGGCACCATCTCCAGCACCAACACGCTGACGC 66601 ||||| ||||| |||| ||| | ||||| || | || | || |||| | || Sbjct 3351 TCATGAGCCAGGCGCTGCGGAAGATGACCGGAGCCTTGAACAACTCCGGCACGACGGCGA 3292 Query 66602 TCTGGGTCAACCAGTTGCGCGAGAAGATCGGCAACGTGGGCTACGGCCCGAACGAGACCA 66661 ||| |||||||| ||||||||||||||||| ||| | |||||||| |||||||| Sbjct 3291 TCTTCATCAACCAGCTGCGCGAGAAGATCGGC---GTGATGTTCGGCCCGACCGAGACCA 3235 Query 66662 CCACGGGCGGCAAGGCTTTGAGGTTCTACGCCTCAGTCCGCATGGATGTCCGTCGCATCG 66721 |||| ||||||||||| ||| ||||||||||| || || |||| || || || |||| Sbjct 3234 CCACAGGCGGCAAGGCCCTGAAATTCTACGCCTCGGTGCGTTTGGACGTGCGCCGGATCG 3175 Query 66722 CCACCGAGAAGGAAGGCGATGAGGCTGTCGGCAACCGCACCCGGGTGAAGGTCGTCAAGA 66781 ||| ||||| ||| || || || | ||||||||||| |||||| ||||||||| Sbjct 3174 AGACCCTCAAGGACGGCTCCGAAGCGGTGGCGAACCGCACCCGCGTGAAGATCGTCAAGA 3115 Query 66782 ACAAGCTGGCCCCGCCGCACCGCAACGCCGAGTTCTCCGTCGTGTACGGGGAGGGCATCT 66841 ||||| | ||||||||| | | || |||||| | || | ||||| |||||| Sbjct 3114 ACAAGGTCGCCCCGCCGTTCAAACAGGCGGAGTTCGACATCATCTACGGCTCCGGCATCA 3055 Query 66842 CGCGTGAGGTCGAACTCCTCGACCTGGCCGTGTCGCAGGGCCTGGTGAAGAAGTCGGGCG 66901 || |||| | ||| ||||||| | |||| ||| ||| | ||| ||||| || | Sbjct 3054 GCCGCGAGGGCTCGCTCATCGACCTCGGCGTGGAGCACGGCATCGTGCGCAAGTCCGGGG 2995 Query 66902 CCTGGTTCAAGTACGGGGACAAGAACGTCGCCCAGGGCAAG 66942 |||||| || ||||| || | | ||| |||||||||| Sbjct 2994 CCTGGTACACCTACGGCGATGAACAGCTCGGCCAGGGCAAG 2954 >seq19061 Length=15585 Score = 185 bits (204), Expect = 4e-42 Identities = 229/308 (74%), Gaps = 9/308 (3%) Strand=Plus/Minus Query 59820 GTCGGCACCCTGACCGCCGACCCCGAGCTGCGGTTCAC-CCAAGGTGGGCAGGCCGTCGC 59878 ||||||| | |||| ||||| ||||||||||||||||| || | | || ||||||||| Sbjct 14188 GTCGGCAACTTGACGGCCGATCCCGAGCTGCGGTTCACACCGACCGGCGC-GGCCGTCGC 14130 Query 59879 CAACTTCACCGTCGTGTCCAACGAACGCCGCCGCGACGCCCAAGGCAAC---TGGGTCGA 59935 ||||||||||||| ||| | || | |||| || |||| ||| || Sbjct 14129 GAACTTCACCGTCGCGTCGACGCCTCGGACCTTCGACCGTCAGACCAACGAGTGGAAGGA 14070 Query 59936 CGGCGACGCCACATTCCTCCGCTGCACCATCTGGCGCGACGCCGCCGAGAACGTGGCGGA 59995 |||||| || ||| | ||||||| |||||||||||| ||||| ||||||||||| || Sbjct 14069 CGGCGAAGCGCTGTTCTTGCGCTGCAACATCTGGCGCGAGGCCGCGGAGAACGTGGCCGA 14010 Query 59996 AAGCCT--CCAGAAAGGCCAGCGCGTCATCGTGCATGGCTACCTCAAGCAGCGCTCCTTC 60053 || |||| ||| ||||||||||||| ||| |||||||||||||| | | Sbjct 14009 GTCGCTGACCAGG--GGCGCGCGCGTCATCGTGACCGGCAGGCTCAAGCAGCGCTCGTAC 13952 Query 60054 GAGACCAAGGAGGGCGACAAGCGCACCGTCATCGAGGTGGAGGTAGACGAGATCGGCCCG 60113 |||||| |||||||| ||||| |||||| ||||| | || || ||||||||||| || Sbjct 13951 GAGACCCGCGAGGGCGAGAAGCGGACCGTCGTCGAGCTCGAAGTCGACGAGATCGGGCCT 13892 Query 60114 TCGCTGCG 60121 || ||||| Sbjct 13891 TCCCTGCG 13884 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 244559838050432