Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Varroa_20destructor_20[genbank_20GCA_5F000181155.2_202017-05-09] 20,448 sequences; 331,927,360 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq19684 140 5e-27 seq17297 134 2e-25 seq973 134 2e-25 seq1092 131 3e-24 seq13314 127 3e-23 seq20303 123 4e-22 seq1896 120 5e-21 seq1993 111 2e-18 seq18175 105 1e-16 seq19464 100 5e-15 seq19807 89.7 8e-12 seq6365 87.8 3e-11 >seq19684 Length=200431 Score = 140 bits (154), Expect = 5e-27 Identities = 179/245 (73%), Gaps = 4/245 (2%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||||||||| || ||||| ||||| || ||||||||| ||||||| || || | | Sbjct 198846 TGTACTTGGTGACCGCTTTGGTCCCCTCGGAAACGGCGTGCTTGGCCAGCTCACCAGGAA 198905 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTT--AGT 1485587 | ||| | ||||||||||||| ||| | | ||| || | ||||| ||| Sbjct 198906 GCAGCAGCCTGACGGCGGTCTGGACCTCCCTCGACGTGATGGTCGACCTTTTGTTGTAGT 198965 Query 1485588 GCGCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTT 1485647 | | | |||||| || |||| |||| | |||| || ||||| || ||||| || Sbjct 198966 GTGAG--AGGCGGGACGCTTCGGCAGCGATCCTTTCGAAGATATCGTTCACGAACGAATT 199023 Query 1485648 CATGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTT 1485707 |||||||||||||| ||| |||||||| ||| ||||| |||||||| ||||| || Sbjct 199024 CATGATCGACATCGCCTTGGATGAGATGCCGGTGTCCGGGTGGACCTGCTTAAGCACTTT 199083 Query 1485708 GTAAA 1485712 ||||| Sbjct 199084 GTAAA 199088 >seq17297 Length=3878 Score = 134 bits (148), Expect = 2e-25 Identities = 178/245 (73%), Gaps = 4/245 (2%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||||||||| || ||||| ||||| || |||||||| ||||||| || || | | Sbjct 3482 TGTACTTGGTGACAGCTTTGGTTCCCTCAGACACGGCGTGTTTGGCCAGCTCACCAGGGA 3423 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGT--TAGT 1485587 | || | ||||||||||| | ||| || | | ||| || | ||||| |||| Sbjct 3422 GCAGTAGCCTGACGGCGGTCTGAACCTCCCGAGAGGTGATGGTCGATCTCTTGTTGTAGT 3363 Query 1485588 GCGCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTT 1485647 ||| | || ||| |||||||| |||| | |||| |||||||| || || ||||| Sbjct 3362 GCGAG--AGACGGGAGGCCTCGGCAGCGATTCTCTCGAAAATGTCGTTTACGAATGAGTT 3305 Query 1485648 CATGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTT 1485707 ||| |||||||| | || ||||| || ||||||||| || ||||| || ||||| Sbjct 3304 CATAATCGACATGGCCTTCGACGAGATACCGGTGTCGGGGTGGACTTGCTTAAGGACCTT 3245 Query 1485708 GTAAA 1485712 ||||| Sbjct 3244 GTAAA 3240 >seq973 Length=50102 Score = 134 bits (148), Expect = 2e-25 Identities = 178/245 (73%), Gaps = 4/245 (2%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||||||||| || ||||| ||||| || |||||||| ||||||| || || | | Sbjct 878 TGTACTTGGTGACAGCTTTGGTTCCCTCAGACACGGCGTGTTTGGCCAGCTCACCAGGGA 819 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGT--TAGT 1485587 | || | ||||||||||| | ||| || | | ||| || | ||||| |||| Sbjct 818 GCAGTAGCCTGACGGCGGTCTGAACCTCCCGAGAGGTGATGGTCGATCTCTTGTTGTAGT 759 Query 1485588 GCGCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTT 1485647 ||| | || ||| |||||||| |||| | |||| |||||||| || || ||||| Sbjct 758 GCGAG--AGACGGGAGGCCTCGGCAGCGATTCTCTCGAAAATGTCGTTTACGAATGAGTT 701 Query 1485648 CATGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTT 1485707 ||| |||||||| | || ||||| || ||||||||| || ||||| || ||||| Sbjct 700 CATAATCGACATGGCCTTCGACGAGATACCGGTGTCGGGGTGGACTTGCTTAAGGACCTT 641 Query 1485708 GTAAA 1485712 ||||| Sbjct 640 GTAAA 636 >seq1092 Length=2021 Score = 131 bits (144), Expect = 3e-24 Identities = 177/245 (72%), Gaps = 4/245 (2%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||||||||| || ||||| ||||| || |||||||| |||||| || || | | Sbjct 875 TGTACTTGGTGACAGCTTTGGTTCCCTCAGACACGGCGTGTTTGGCCAACTCACCAGGGA 816 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGT--TAGT 1485587 | || | ||||||||||| | ||| || | | ||| || | ||||| |||| Sbjct 815 GCAGTAGCCTGACGGCGGTCTGAACCTCCCGAGAGGTGATGGTCGATCTCTTGTTGTAGT 756 Query 1485588 GCGCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTT 1485647 ||| | || ||| |||||||| |||| | |||| |||||||| || || ||||| Sbjct 755 GCGAG--AGACGGGAGGCCTCGGCAGCGATTCTCTCGAAAATGTCGTTTACGAATGAGTT 698 Query 1485648 CATGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTT 1485707 ||| |||||||| | || ||||| || ||||||||| || ||||| || ||||| Sbjct 697 CATAATCGACATGGCCTTCGACGAGATACCGGTGTCGGGGTGGACTTGCTTAAGGACCTT 638 Query 1485708 GTAAA 1485712 ||||| Sbjct 637 GTAAA 633 >seq13314 Length=1393 Score = 127 bits (140), Expect = 3e-23 Identities = 177/245 (72%), Gaps = 5/245 (2%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||||||||| || ||||| ||||| || |||||||| ||||||| || || | | Sbjct 251 TGTACTTGGTGACAGCTTTGGTTCCCTCAGACACGGCGTGTTTGGCCAGCTCACCAGGGA 192 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGT--TAGT 1485587 | || | ||||||||||| | ||| || | | ||| || | ||||| |||| Sbjct 191 GCAGAAGCCTGACGGCGGTCTGAACCTCCCGAGAGGTGATGGTCGATCTCTTGTTGTAGT 132 Query 1485588 GCGCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTT 1485647 ||| | || ||| |||||||| |||| | |||| |||||||| || || ||||| Sbjct 131 GCGAG--AGACGGGAGGCCTCGGCAGCGATTCTCTCGAAAATGTCGTTTACGAATGAGTT 74 Query 1485648 CATGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTT 1485707 ||| |||||||| | || ||||| || ||| ||||| || ||||| || ||||| Sbjct 73 CATAATCGACATGGCCTTCGACGAGATACCAGTGTC-GGGTGGACTTGCTTAAGGACCTT 15 Query 1485708 GTAAA 1485712 ||||| Sbjct 14 GTAAA 10 >seq20303 Length=7771 Score = 123 bits (136), Expect = 4e-22 Identities = 172/241 (71%), Gaps = 0/241 (0%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||| |||||||||||||| || || || ||||||||| | |||||||| || | | Sbjct 675 TGTACTTAGTGACGGCCTTGGTTCCTTCAGACACGGCGTGCTTAGCCAGTTCACCAGGAA 616 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | || | ||||||||||| | ||| | | | ||| || | ||| ||| Sbjct 615 GCAGGAGCCTAACGGCGGTCTGAACCTCCCTAGAGGTGATAGTCGACCTCTTATTATAAT 556 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 | | ||||||| ||| || | |||| | || | |||||||| ||| ||||||||| Sbjct 555 GGGACAGGCGGGAGGCTTCAGCAGCGATTCTCTCAAAGATGTCGTTCACATACGAGTTCA 496 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||||| | || |||||| || ||||||||| ||||| || || ||||||| Sbjct 495 TGATGGACATAGCCTTCGAGGAGATACCGGTGTCGGGGTGGACCTGTTTAAGGACCTTGT 436 Query 1485710 A 1485710 | Sbjct 435 A 435 Score = 111 bits (122), Expect = 2e-18 Identities = 169/241 (70%), Gaps = 0/241 (0%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||||||||| ||||| ||||| || || ||||||||| | |||||||| || | | Sbjct 3949 TGTACTTGGTGACAGCCTTAGTACCTTCAGACACGGCGTGCTTAGCCAGTTCACCAGGGA 3890 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | || | || || ||||| | ||| || | | ||| || | ||| ||| Sbjct 3889 GCAGAAGCCTAACAGCAGTCTGAACCTCCCGAGAGGTGATAGTCGACCTCTTATTATAAT 3830 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 | | ||||||| ||| || | | | || | || | |||||||| ||||| ||||||| Sbjct 3829 GGGACAGGCGGGAGGCTTCAGCGGCAATTCTCTCAAAGATGTCGTTCACAAATGAGTTCA 3770 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||||| | ||| |||||| || || || || ||||| ||||| || |||| Sbjct 3769 TGATGGACATGGCTTTCGAGGAGATACCGGTATCAGGATGGACCTGTTTGAGAACTTTGT 3710 Query 1485710 A 1485710 | Sbjct 3709 A 3709 >seq1896 Length=13079 Score = 120 bits (132), Expect = 5e-21 Identities = 171/241 (71%), Gaps = 0/241 (0%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||| || ||||| || ||||||||||| || || ||||| |||||||||| || | | Sbjct 9507 TGTATTTAGTGACAGCTTTGGTACCCTCAGACACAGCGTGTTTGGCCAGTTCACCAGGTA 9566 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | || | ||||| ||||| | ||| || | | ||| || | ||||||| Sbjct 9567 GCAGTAGCCTAACGGCAGTCTGAACCTCTCGAGAGGTGATGGTCGACCTCTTGTTATAAT 9626 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 | | ||| ||| |||||||| | || | |||| |||||||| ||||||||||||| Sbjct 9627 GAGACAGACGGGAGGCCTCGGCAGCAATTCTCTCGAAGATGTCGTTAACAAACGAGTTCA 9686 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||||| | ||| ||| || || ||||| || ||||| ||||| || |||| Sbjct 9687 TGATTGACATGGCTTTCGAGGAAATTCCGGTATCGGGATGGACCTGTTTGAGGACTTTGT 9746 Query 1485710 A 1485710 | Sbjct 9747 A 9747 >seq1993 Length=4406 Score = 111 bits (122), Expect = 2e-18 Identities = 169/241 (70%), Gaps = 0/241 (0%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||||||||| ||||| ||||| || || ||||||||| | |||||||| || | | Sbjct 3680 TGTACTTGGTGACAGCCTTAGTACCTTCAGACACGGCGTGCTTAGCCAGTTCACCAGGAA 3739 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | || | || || ||||| | ||| || | | ||| || | ||| ||| Sbjct 3740 GCAGAAGCCTAACAGCAGTCTGAACCTCCCGAGAGGTGATAGTCGACCTCTTATTATAAT 3799 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 | | ||||||| ||| || | | | || | || | |||||||| ||||| ||||||| Sbjct 3800 GGGACAGGCGGGAGGCTTCAGCGGCAATTCTCTCAAAGATGTCGTTCACAAATGAGTTCA 3859 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||||| | ||| |||||| || || || || ||||| ||||| || |||| Sbjct 3860 TGATGGACATGGCTTTCGAGGAGATACCGGTATCAGGATGGACCTGTTTGAGAACTTTGT 3919 Query 1485710 A 1485710 | Sbjct 3920 A 3920 >seq18175 Length=3548 Score = 105 bits (116), Expect = 1e-16 Identities = 168/241 (70%), Gaps = 0/241 (0%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||||||||| ||||| || || || || ||||||||| | |||||||| || | | Sbjct 2356 TGTACTTGGTGACAGCCTTAGTGCCTTCAGACACGGCGTGCTTAGCCAGTTCACCAGGAA 2415 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | || | ||||| ||||| | ||| || | | ||| || | || ||| Sbjct 2416 GCAGGAGCCTGACGGCAGTCTGAACCTCCCGAGAGGTGATAGTCGACCTTTTATTATAAT 2475 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 | | ||||||| ||| || | | |||| | || | ||||| || ||||| ||||||| Sbjct 2476 GGGACAGGCGGGAGGCTTCAGCGGCGATTCTCTCAAAGATGTCATTCACAAATGAGTTCA 2535 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||||| | ||| |||||| || ||||| || ||||| ||||| || || | Sbjct 2536 TGATGGACATGGCTTTCGAGGAGATACCGGTATCGGGATGGACCTGTTTGAGAACTTTAT 2595 Query 1485710 A 1485710 | Sbjct 2596 A 2596 >seq19464 Length=44290 Score = 100 bits (110), Expect = 5e-15 Identities = 94/118 (80%), Gaps = 4/118 (3%) Strand=Plus/Plus Query 796300 TCGACCTCCTCGGCGGTCCAAAAGGAGGCCTCGGCCTTTTTGTACATCTCCCATATCCGT 796359 ||||||||||| ||||||||||| ||||||| |||||||||||||| | ||| || || Sbjct 13164 TCGACCTCCTCAGCGGTCCAAAAAGAGGCCTGTGCCTTTTTGTACATTTGCCAAAT--GT 13221 Query 796360 TGG--TAGCGGATGGGGAACAGAACAAAGCGATTGGGGTTCTCGCGTAGCAGCGGCTC 796415 || || ||||| || || ||||| |||||||||||||| || |||| ||| || Sbjct 13222 CGGAATATTCAATGGGAAAAAGCACAAAACGATTGGGGTTCTCCCGGAGCAACGGTTC 13279 >seq19807 Length=15530 Score = 89.7 bits (98), Expect = 8e-12 Identities = 193/279 (69%), Gaps = 11/279 (4%) Strand=Plus/Minus Query 122738 GCCGAGAACCTCATGATCGTCGACCTGGTGCGCAACGACCTGAGCGTGTGCTGCGCGCCC 122797 || ||||||||||||||||| |||||| | |||||||||||| | | ||||| | | Sbjct 5572 GCGGAGAACCTCATGATCGTGGACCTGCTCCGCAACGACCTGTCCCAGGTCTGCGAGGTC 5513 Query 122798 GGCAGCGTCGTCGTACCGCCAGGTCGCCTCATGGCGATCGAGACCTATGCCGCCGTGCAC 122857 |||| || ||||| |||| | | || ||||| | |||| ||| ||| ||||||| Sbjct 5512 GGCA-CG--GTCGTGACGCC--GAAG-CTGATGGCCGTGGAGAGCTACGCCACCGTGCAT 5459 Query 122858 CAGATGGTGACCACCGT-CGACGCCCTGTTGGATCGGCACAGGACGGCGCTGGACCTCGT 122916 ||| ||||| |||| || ||| || | | ||| | ||| || ||||| || Sbjct 5458 CAGCTGGTGTCCACGGTGCGAGGCAGGCTGCGGCCGGGAGCAGAC-TCGGTGGACGCGGT 5400 Query 122917 GCGTGCGGCCTTTCCGCCGGGCTCGATGACGGGTGCGCCCAAAGCGCGCAGCATGGACAT 122976 ||| || ||| || |||||| ||||| || ||||| || || | ||||| || Sbjct 5399 GCGCGCCTGCTTCCCAGGGGGCTCTATGACCGGCGCGCCGAAGAAACGGACGATGGAGAT 5340 Query 122977 TTTGGATCGCCTCGAAGAGCACCGTCCGCGCGGAATCTA 123015 | || || ||||||| || | | ||||||| |||| Sbjct 5339 CATCGACCGGCTCGAAG-GCGCGG--CGCGCGGCGTCTA 5304 >seq6365 Length=34235 Score = 87.8 bits (96), Expect = 3e-11 Identities = 71/86 (83%), Gaps = 0/86 (0%) Strand=Plus/Plus Query 1812773 TTGGTAGCGATGCCTCGGTGGCGCAGTTGGCGGCGCGCCAATCCCATAAATTGGAGGTCG 1812832 || |||| | |||||||| ||||||| ||| ||||| || || ||||| || |||||| Sbjct 5534 TTTGTAGTCACGCCTCGGTAGCGCAGTAGGCAGCGCGTCAGTCTCATAATCTGAAGGTCG 5593 Query 1812833 TGAGTTCGATCCTCACCCGAGGTATA 1812858 ||||||||||||||||||| || ||| Sbjct 5594 TGAGTTCGATCCTCACCCGGGGCATA 5619 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7914071252976672