Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Varroa_20destructor_20[genbank_20GCA_5F000181155.2_202017-05-09]
20,448 sequences; 331,927,360 total letters
Query= NC_022098.1
Length=2473870
Score E
Sequences producing significant alignments: (Bits) Value
seq19684 140 5e-27
seq17297 134 2e-25
seq973 134 2e-25
seq1092 131 3e-24
seq13314 127 3e-23
seq20303 123 4e-22
seq1896 120 5e-21
seq1993 111 2e-18
seq18175 105 1e-16
seq19464 100 5e-15
seq19807 89.7 8e-12
seq6365 87.8 3e-11
>seq19684
Length=200431
Score = 140 bits (154), Expect = 5e-27
Identities = 179/245 (73%), Gaps = 4/245 (2%)
Strand=Plus/Plus
Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529
||||||||||||| || ||||| ||||| || ||||||||| ||||||| || || | |
Sbjct 198846 TGTACTTGGTGACCGCTTTGGTCCCCTCGGAAACGGCGTGCTTGGCCAGCTCACCAGGAA 198905
Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTT--AGT 1485587
| ||| | ||||||||||||| ||| | | ||| || | ||||| |||
Sbjct 198906 GCAGCAGCCTGACGGCGGTCTGGACCTCCCTCGACGTGATGGTCGACCTTTTGTTGTAGT 198965
Query 1485588 GCGCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTT 1485647
| | | |||||| || |||| |||| | |||| || ||||| || ||||| ||
Sbjct 198966 GTGAG--AGGCGGGACGCTTCGGCAGCGATCCTTTCGAAGATATCGTTCACGAACGAATT 199023
Query 1485648 CATGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTT 1485707
|||||||||||||| ||| |||||||| ||| ||||| |||||||| ||||| ||
Sbjct 199024 CATGATCGACATCGCCTTGGATGAGATGCCGGTGTCCGGGTGGACCTGCTTAAGCACTTT 199083
Query 1485708 GTAAA 1485712
|||||
Sbjct 199084 GTAAA 199088
>seq17297
Length=3878
Score = 134 bits (148), Expect = 2e-25
Identities = 178/245 (73%), Gaps = 4/245 (2%)
Strand=Plus/Minus
Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529
||||||||||||| || ||||| ||||| || |||||||| ||||||| || || | |
Sbjct 3482 TGTACTTGGTGACAGCTTTGGTTCCCTCAGACACGGCGTGTTTGGCCAGCTCACCAGGGA 3423
Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGT--TAGT 1485587
| || | ||||||||||| | ||| || | | ||| || | ||||| ||||
Sbjct 3422 GCAGTAGCCTGACGGCGGTCTGAACCTCCCGAGAGGTGATGGTCGATCTCTTGTTGTAGT 3363
Query 1485588 GCGCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTT 1485647
||| | || ||| |||||||| |||| | |||| |||||||| || || |||||
Sbjct 3362 GCGAG--AGACGGGAGGCCTCGGCAGCGATTCTCTCGAAAATGTCGTTTACGAATGAGTT 3305
Query 1485648 CATGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTT 1485707
||| |||||||| | || ||||| || ||||||||| || ||||| || |||||
Sbjct 3304 CATAATCGACATGGCCTTCGACGAGATACCGGTGTCGGGGTGGACTTGCTTAAGGACCTT 3245
Query 1485708 GTAAA 1485712
|||||
Sbjct 3244 GTAAA 3240
>seq973
Length=50102
Score = 134 bits (148), Expect = 2e-25
Identities = 178/245 (73%), Gaps = 4/245 (2%)
Strand=Plus/Minus
Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529
||||||||||||| || ||||| ||||| || |||||||| ||||||| || || | |
Sbjct 878 TGTACTTGGTGACAGCTTTGGTTCCCTCAGACACGGCGTGTTTGGCCAGCTCACCAGGGA 819
Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGT--TAGT 1485587
| || | ||||||||||| | ||| || | | ||| || | ||||| ||||
Sbjct 818 GCAGTAGCCTGACGGCGGTCTGAACCTCCCGAGAGGTGATGGTCGATCTCTTGTTGTAGT 759
Query 1485588 GCGCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTT 1485647
||| | || ||| |||||||| |||| | |||| |||||||| || || |||||
Sbjct 758 GCGAG--AGACGGGAGGCCTCGGCAGCGATTCTCTCGAAAATGTCGTTTACGAATGAGTT 701
Query 1485648 CATGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTT 1485707
||| |||||||| | || ||||| || ||||||||| || ||||| || |||||
Sbjct 700 CATAATCGACATGGCCTTCGACGAGATACCGGTGTCGGGGTGGACTTGCTTAAGGACCTT 641
Query 1485708 GTAAA 1485712
|||||
Sbjct 640 GTAAA 636
>seq1092
Length=2021
Score = 131 bits (144), Expect = 3e-24
Identities = 177/245 (72%), Gaps = 4/245 (2%)
Strand=Plus/Minus
Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529
||||||||||||| || ||||| ||||| || |||||||| |||||| || || | |
Sbjct 875 TGTACTTGGTGACAGCTTTGGTTCCCTCAGACACGGCGTGTTTGGCCAACTCACCAGGGA 816
Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGT--TAGT 1485587
| || | ||||||||||| | ||| || | | ||| || | ||||| ||||
Sbjct 815 GCAGTAGCCTGACGGCGGTCTGAACCTCCCGAGAGGTGATGGTCGATCTCTTGTTGTAGT 756
Query 1485588 GCGCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTT 1485647
||| | || ||| |||||||| |||| | |||| |||||||| || || |||||
Sbjct 755 GCGAG--AGACGGGAGGCCTCGGCAGCGATTCTCTCGAAAATGTCGTTTACGAATGAGTT 698
Query 1485648 CATGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTT 1485707
||| |||||||| | || ||||| || ||||||||| || ||||| || |||||
Sbjct 697 CATAATCGACATGGCCTTCGACGAGATACCGGTGTCGGGGTGGACTTGCTTAAGGACCTT 638
Query 1485708 GTAAA 1485712
|||||
Sbjct 637 GTAAA 633
>seq13314
Length=1393
Score = 127 bits (140), Expect = 3e-23
Identities = 177/245 (72%), Gaps = 5/245 (2%)
Strand=Plus/Minus
Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529
||||||||||||| || ||||| ||||| || |||||||| ||||||| || || | |
Sbjct 251 TGTACTTGGTGACAGCTTTGGTTCCCTCAGACACGGCGTGTTTGGCCAGCTCACCAGGGA 192
Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGT--TAGT 1485587
| || | ||||||||||| | ||| || | | ||| || | ||||| ||||
Sbjct 191 GCAGAAGCCTGACGGCGGTCTGAACCTCCCGAGAGGTGATGGTCGATCTCTTGTTGTAGT 132
Query 1485588 GCGCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTT 1485647
||| | || ||| |||||||| |||| | |||| |||||||| || || |||||
Sbjct 131 GCGAG--AGACGGGAGGCCTCGGCAGCGATTCTCTCGAAAATGTCGTTTACGAATGAGTT 74
Query 1485648 CATGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTT 1485707
||| |||||||| | || ||||| || ||| ||||| || ||||| || |||||
Sbjct 73 CATAATCGACATGGCCTTCGACGAGATACCAGTGTC-GGGTGGACTTGCTTAAGGACCTT 15
Query 1485708 GTAAA 1485712
|||||
Sbjct 14 GTAAA 10
>seq20303
Length=7771
Score = 123 bits (136), Expect = 4e-22
Identities = 172/241 (71%), Gaps = 0/241 (0%)
Strand=Plus/Minus
Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529
||||||| |||||||||||||| || || || ||||||||| | |||||||| || | |
Sbjct 675 TGTACTTAGTGACGGCCTTGGTTCCTTCAGACACGGCGTGCTTAGCCAGTTCACCAGGAA 616
Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589
| || | ||||||||||| | ||| | | | ||| || | ||| |||
Sbjct 615 GCAGGAGCCTAACGGCGGTCTGAACCTCCCTAGAGGTGATAGTCGACCTCTTATTATAAT 556
Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649
| | ||||||| ||| || | |||| | || | |||||||| ||| |||||||||
Sbjct 555 GGGACAGGCGGGAGGCTTCAGCAGCGATTCTCTCAAAGATGTCGTTCACATACGAGTTCA 496
Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709
|||| ||||| | || |||||| || ||||||||| ||||| || || |||||||
Sbjct 495 TGATGGACATAGCCTTCGAGGAGATACCGGTGTCGGGGTGGACCTGTTTAAGGACCTTGT 436
Query 1485710 A 1485710
|
Sbjct 435 A 435
Score = 111 bits (122), Expect = 2e-18
Identities = 169/241 (70%), Gaps = 0/241 (0%)
Strand=Plus/Minus
Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529
||||||||||||| ||||| ||||| || || ||||||||| | |||||||| || | |
Sbjct 3949 TGTACTTGGTGACAGCCTTAGTACCTTCAGACACGGCGTGCTTAGCCAGTTCACCAGGGA 3890
Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589
| || | || || ||||| | ||| || | | ||| || | ||| |||
Sbjct 3889 GCAGAAGCCTAACAGCAGTCTGAACCTCCCGAGAGGTGATAGTCGACCTCTTATTATAAT 3830
Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649
| | ||||||| ||| || | | | || | || | |||||||| ||||| |||||||
Sbjct 3829 GGGACAGGCGGGAGGCTTCAGCGGCAATTCTCTCAAAGATGTCGTTCACAAATGAGTTCA 3770
Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709
|||| ||||| | ||| |||||| || || || || ||||| ||||| || ||||
Sbjct 3769 TGATGGACATGGCTTTCGAGGAGATACCGGTATCAGGATGGACCTGTTTGAGAACTTTGT 3710
Query 1485710 A 1485710
|
Sbjct 3709 A 3709
>seq1896
Length=13079
Score = 120 bits (132), Expect = 5e-21
Identities = 171/241 (71%), Gaps = 0/241 (0%)
Strand=Plus/Plus
Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529
|||| || ||||| || ||||||||||| || || ||||| |||||||||| || | |
Sbjct 9507 TGTATTTAGTGACAGCTTTGGTACCCTCAGACACAGCGTGTTTGGCCAGTTCACCAGGTA 9566
Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589
| || | ||||| ||||| | ||| || | | ||| || | |||||||
Sbjct 9567 GCAGTAGCCTAACGGCAGTCTGAACCTCTCGAGAGGTGATGGTCGACCTCTTGTTATAAT 9626
Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649
| | ||| ||| |||||||| | || | |||| |||||||| |||||||||||||
Sbjct 9627 GAGACAGACGGGAGGCCTCGGCAGCAATTCTCTCGAAGATGTCGTTAACAAACGAGTTCA 9686
Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709
|||| ||||| | ||| ||| || || ||||| || ||||| ||||| || ||||
Sbjct 9687 TGATTGACATGGCTTTCGAGGAAATTCCGGTATCGGGATGGACCTGTTTGAGGACTTTGT 9746
Query 1485710 A 1485710
|
Sbjct 9747 A 9747
>seq1993
Length=4406
Score = 111 bits (122), Expect = 2e-18
Identities = 169/241 (70%), Gaps = 0/241 (0%)
Strand=Plus/Plus
Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529
||||||||||||| ||||| ||||| || || ||||||||| | |||||||| || | |
Sbjct 3680 TGTACTTGGTGACAGCCTTAGTACCTTCAGACACGGCGTGCTTAGCCAGTTCACCAGGAA 3739
Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589
| || | || || ||||| | ||| || | | ||| || | ||| |||
Sbjct 3740 GCAGAAGCCTAACAGCAGTCTGAACCTCCCGAGAGGTGATAGTCGACCTCTTATTATAAT 3799
Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649
| | ||||||| ||| || | | | || | || | |||||||| ||||| |||||||
Sbjct 3800 GGGACAGGCGGGAGGCTTCAGCGGCAATTCTCTCAAAGATGTCGTTCACAAATGAGTTCA 3859
Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709
|||| ||||| | ||| |||||| || || || || ||||| ||||| || ||||
Sbjct 3860 TGATGGACATGGCTTTCGAGGAGATACCGGTATCAGGATGGACCTGTTTGAGAACTTTGT 3919
Query 1485710 A 1485710
|
Sbjct 3920 A 3920
>seq18175
Length=3548
Score = 105 bits (116), Expect = 1e-16
Identities = 168/241 (70%), Gaps = 0/241 (0%)
Strand=Plus/Plus
Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529
||||||||||||| ||||| || || || || ||||||||| | |||||||| || | |
Sbjct 2356 TGTACTTGGTGACAGCCTTAGTGCCTTCAGACACGGCGTGCTTAGCCAGTTCACCAGGAA 2415
Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589
| || | ||||| ||||| | ||| || | | ||| || | || |||
Sbjct 2416 GCAGGAGCCTGACGGCAGTCTGAACCTCCCGAGAGGTGATAGTCGACCTTTTATTATAAT 2475
Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649
| | ||||||| ||| || | | |||| | || | ||||| || ||||| |||||||
Sbjct 2476 GGGACAGGCGGGAGGCTTCAGCGGCGATTCTCTCAAAGATGTCATTCACAAATGAGTTCA 2535
Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709
|||| ||||| | ||| |||||| || ||||| || ||||| ||||| || || |
Sbjct 2536 TGATGGACATGGCTTTCGAGGAGATACCGGTATCGGGATGGACCTGTTTGAGAACTTTAT 2595
Query 1485710 A 1485710
|
Sbjct 2596 A 2596
>seq19464
Length=44290
Score = 100 bits (110), Expect = 5e-15
Identities = 94/118 (80%), Gaps = 4/118 (3%)
Strand=Plus/Plus
Query 796300 TCGACCTCCTCGGCGGTCCAAAAGGAGGCCTCGGCCTTTTTGTACATCTCCCATATCCGT 796359
||||||||||| ||||||||||| ||||||| |||||||||||||| | ||| || ||
Sbjct 13164 TCGACCTCCTCAGCGGTCCAAAAAGAGGCCTGTGCCTTTTTGTACATTTGCCAAAT--GT 13221
Query 796360 TGG--TAGCGGATGGGGAACAGAACAAAGCGATTGGGGTTCTCGCGTAGCAGCGGCTC 796415
|| || ||||| || || ||||| |||||||||||||| || |||| ||| ||
Sbjct 13222 CGGAATATTCAATGGGAAAAAGCACAAAACGATTGGGGTTCTCCCGGAGCAACGGTTC 13279
>seq19807
Length=15530
Score = 89.7 bits (98), Expect = 8e-12
Identities = 193/279 (69%), Gaps = 11/279 (4%)
Strand=Plus/Minus
Query 122738 GCCGAGAACCTCATGATCGTCGACCTGGTGCGCAACGACCTGAGCGTGTGCTGCGCGCCC 122797
|| ||||||||||||||||| |||||| | |||||||||||| | | ||||| | |
Sbjct 5572 GCGGAGAACCTCATGATCGTGGACCTGCTCCGCAACGACCTGTCCCAGGTCTGCGAGGTC 5513
Query 122798 GGCAGCGTCGTCGTACCGCCAGGTCGCCTCATGGCGATCGAGACCTATGCCGCCGTGCAC 122857
|||| || ||||| |||| | | || ||||| | |||| ||| ||| |||||||
Sbjct 5512 GGCA-CG--GTCGTGACGCC--GAAG-CTGATGGCCGTGGAGAGCTACGCCACCGTGCAT 5459
Query 122858 CAGATGGTGACCACCGT-CGACGCCCTGTTGGATCGGCACAGGACGGCGCTGGACCTCGT 122916
||| ||||| |||| || ||| || | | ||| | ||| || ||||| ||
Sbjct 5458 CAGCTGGTGTCCACGGTGCGAGGCAGGCTGCGGCCGGGAGCAGAC-TCGGTGGACGCGGT 5400
Query 122917 GCGTGCGGCCTTTCCGCCGGGCTCGATGACGGGTGCGCCCAAAGCGCGCAGCATGGACAT 122976
||| || ||| || |||||| ||||| || ||||| || || | ||||| ||
Sbjct 5399 GCGCGCCTGCTTCCCAGGGGGCTCTATGACCGGCGCGCCGAAGAAACGGACGATGGAGAT 5340
Query 122977 TTTGGATCGCCTCGAAGAGCACCGTCCGCGCGGAATCTA 123015
| || || ||||||| || | | ||||||| ||||
Sbjct 5339 CATCGACCGGCTCGAAG-GCGCGG--CGCGCGGCGTCTA 5304
>seq6365
Length=34235
Score = 87.8 bits (96), Expect = 3e-11
Identities = 71/86 (83%), Gaps = 0/86 (0%)
Strand=Plus/Plus
Query 1812773 TTGGTAGCGATGCCTCGGTGGCGCAGTTGGCGGCGCGCCAATCCCATAAATTGGAGGTCG 1812832
|| |||| | |||||||| ||||||| ||| ||||| || || ||||| || ||||||
Sbjct 5534 TTTGTAGTCACGCCTCGGTAGCGCAGTAGGCAGCGCGTCAGTCTCATAATCTGAAGGTCG 5593
Query 1812833 TGAGTTCGATCCTCACCCGAGGTATA 1812858
||||||||||||||||||| || |||
Sbjct 5594 TGAGTTCGATCCTCACCCGGGGCATA 5619
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 7914071252976672
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |