Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Varroa_20destructor_20[genbank_20GCA_5F000181155.2_202017-05-09]
20,448 sequences; 331,927,360 total letters
Query= NC_022646.1
Length=101818
Score E
Sequences producing significant alignments: (Bits) Value
seq7231 136 3e-27
seq19980 104 2e-17
>seq7231
Length=219762
Score = 136 bits (150), Expect = 3e-27
Identities = 158/213 (74%), Gaps = 0/213 (0%)
Strand=Plus/Plus
Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825
|| |||| ||||| ||||| ||||| |||||||| ||||| || |||| ||||
Sbjct 93459 AGCACCAAGTGAAGCGTGCTTTCCTTTTGAATGTTGTAGTCACTGAGTGTGCGACCATCC 93518
Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885
|| ||||| ||||||||||| || || ||||||||||| | || | |||||||||||
Sbjct 93519 TCGAGTTGTTTTCCGGCGAAAATGAGACGTTGCTGGTCAGGAGGAATACCCTCCTTGTCC 93578
Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945
| ||||| || ||| | | || | || ||| || || |||| || || |||
Sbjct 93579 TGGATTTTGGCCTTCACGTTTTCAATTGTATCGCTGGGTTCAACCTCAAGTGTGATAGTC 93638
Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978
|| |||||||||||||| || ||||||||||||
Sbjct 93639 TTCCCCGTGAGGGTCTTGACGAAGATCTGCATG 93671
Score = 125 bits (138), Expect = 5e-24
Identities = 155/212 (73%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825
|| || || || | |||||| |||||||| ||||| ||||||||||| |||| | ||
Sbjct 92815 AGCACGAGATGCAAGGTGCTTTCCTTCTGGATGTTGTAGTCCGATAGCGTGCGACCGTCC 92874
Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885
|| ||||| ||||| || ||||| || || || ||||| |||| | ||||| |||||
Sbjct 92875 TCGAGTTGTTTTCCAGCAAAGATGAGACGCTGTTGGTCAGGCGGAATGCCCTCTTTGTCT 92934
Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945
| ||||| ||| ||| | || | || | | ||| || |||| ||||| ||
Sbjct 92935 TGAATTTTCGCTTTTACGTTCTCAATGGTGTCGCTTGGCTCAACTTCAAGTGTTATTGTT 92994
Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977
|||||||| ||||| || ||||| ||||||||
Sbjct 92995 TTTCCCGTAAGGGTTTTCACAAAAATCTGCAT 93026
Score = 116 bits (128), Expect = 2e-21
Identities = 144/197 (73%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 34781 GTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCG 34840
||||| ||||||||||||||||| || ||| |||| |||| |||| || |||||
Sbjct 93246 GTGCTTTCCTTCTGAATGTTATAATCGTTAAGGGTGCGGCCATCCTCCAACTGTTTTCCA 93305
Query 34841 GCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTG 34900
|| || |||| ||||||||||| | || | ||||| ||||| | || ||| ||||
Sbjct 93306 GCAAAAATCAAACGTTGCTGGTCAGGAGGAATGCCCTCTTTGTCCTGGATCTTTGCTTTG 93365
Query 34901 ACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTC 34960
|| | | || | || | |||||| |||| || || ||||| || ||||| |||
Sbjct 93366 ACATTTTCAATTGTGTCGGATGGCTCGACTTCAAGCGTGATCGTCTTGCCGGTGAGAGTC 93425
Query 34961 TTTACAAAGATCTGCAT 34977
|| ||||||||||||||
Sbjct 93426 TTGACAAAGATCTGCAT 93442
Score = 116 bits (128), Expect = 2e-21
Identities = 141/192 (73%), Gaps = 0/192 (0%)
Strand=Plus/Plus
Query 34786 CTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAA 34845
|||||| ||||| ||||| || || ||| | || | || ||||||||||| || || ||
Sbjct 93707 CTCCTTTTGAATATTATAATCTGAGAGGGTACGGCCGTCTTCCAGTTGCTTGCCAGCAAA 93766
Query 34846 GATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGA 34905
|||||| |||||||| || | || | ||||| || || | |||||| || ||
Sbjct 93767 GATCAGACGTTGCTGATCCGGAGGGATGCCCTCTTTATCCTGGATTTTTGCCTTCACATT 93826
Query 34906 TGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTAC 34965
| | || | || ||| || || |||| ||| ||||| ||||| ||||| ||||| ||
Sbjct 93827 TTCAATTGTATCGCTGGGTTCAACTTCAAGGGTGATGGTTTTTCCAGTGAGCGTCTTCAC 93886
Query 34966 AAAGATCTGCAT 34977
||||||||||||
Sbjct 93887 AAAGATCTGCAT 93898
Score = 89.7 bits (98), Expect = 3e-13
Identities = 135/192 (70%), Gaps = 0/192 (0%)
Strand=Plus/Plus
Query 34786 CTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAA 34845
||| ||||||||||||||||| ||||| | || | || || || ||||| || || ||
Sbjct 100243 CTCTTTCTGAATGTTATAGTCTGATAGCGTTCGGCCGTCTTCAAGCTGCTTGCCAGCAAA 100302
Query 34846 GATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGA 34905
||| | | |||||| || |||| | || |||||||| | || ||| || |||
Sbjct 100303 GATTAACCTTTGCTGATCGGGCGGAATACCTTCCTTGTCTTGAATCTTTGCCTTAACGTT 100362
Query 34906 TGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTAC 34965
| | || | || | | || || || | || || |||||||| || || || |||||
Sbjct 100363 TTCGATTGTATCGCTAGGTTCAACCTCTAGAGTGATCGTCTTTCCGGTCAGCGTTTTTAC 100422
Query 34966 AAAGATCTGCAT 34977
|||||||||||
Sbjct 100423 GAAGATCTGCAT 100434
Score = 86.0 bits (94), Expect = 4e-12
Identities = 157/230 (68%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 34748 TTTCCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCC 34807
|||||||| | | || || ||||| |||| || ||| |||||||||||||||||
Sbjct 99977 TTTCCTCCGCGGAGTCTGAGCACCAGATGAAGAGTAGACTCTTTCTGAATGTTATAGTCA 100036
Query 34808 GATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGC 34867
||||| | || |||| || || || || || || || || || | || || || |
Sbjct 100037 GATAGAGTACGACCATCTTCGAGCTGTTTACCAGCAAAAATTAGCCTCTGTTGATCAGGA 100096
Query 34868 GGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCG 34927
|| | || || ||||| | ||||| |||||| | | || | ||| ||| ||
Sbjct 100097 GGGATTCCTTCTTTGTCCTGAATTTTGGCCTTGACGTTTTCAATGGTATCACTGGATTCT 100156
Query 34928 ACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977
|| || | || || || || || ||||| ||||| || || ||||||||
Sbjct 100157 ACCTCGAGTGTGATAGTTTTGCCTGTGAGCGTCTTCACGAAAATCTGCAT 100206
Score = 84.2 bits (92), Expect = 1e-11
Identities = 148/214 (69%), Gaps = 4/214 (2%)
Strand=Plus/Plus
Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825
|| || || || | |||| ||| || || || || ||||| || ||| | || | ||
Sbjct 100451 AGAACAAGATGGAGGGTGGACTCTTTTTGGATATTGTAGTCTGAAAGGGTACGACCGTCT 100510
Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885
|| ||||| || ||||| ||||||| | || || ||| | || | || || |||||
Sbjct 100511 TCAAGTTGTTTACCGGCAAAGATCAACCTCTGTTGATCTGGAGGGATACCTTCTTTGTCT 100570
Query 34886 TTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGACATCAACGGTTATGG 34943
| ||||| ||| || || || || | ||| || ||| || || | ||| || |
Sbjct 100571 TGGATTTTCGCTTTAAC--ATTCTCAATTGTGTCAGAGGGCTCAACTTCCAGGGTAATAG 100628
Query 34944 TCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977
||||||| || ||||| || || |||||||||||
Sbjct 100629 TCTTTCCGGTAAGGGTTTTCACGAAGATCTGCAT 100662
>seq19980
Length=299602
Score = 104 bits (114), Expect = 2e-17
Identities = 150/212 (71%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825
||||| ||||| | |||| |||||| ||||| || |||||||| ||| |||| ||||
Sbjct 144947 AGGACAAGGTGGAGGGTGGACTCCTTTTGAATATTGTAGTCCGAAAGGGTGCGTCCATCT 144888
Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885
|| || ||||||||||| ||||||| || || || || | || | || ||||||||
Sbjct 144887 TCAAGCTGCTTTCCGGCAAAGATCAATCTCTGTTGATCGGGGGGAATTCCTTCCTTGTCT 144828
Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945
| || || || ||| | || | ||| | ||| || || | ||| ||||||
Sbjct 144827 TGAATCTTGGCCTTTACGTTCTCAATTGTATCAGAAGGCTCCACTTCCAAGGTGATGGTC 144768
Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977
|| || || ||||| || || || || |||||
Sbjct 144767 TTCCCAGTAAGGGTTTTGACGAAAATTTGCAT 144736
Score = 87.8 bits (96), Expect = 1e-12
Identities = 149/214 (70%), Gaps = 4/214 (2%)
Strand=Plus/Minus
Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825
|| || || |||| ||| |||||| || || || ||||| || || | || ||||
Sbjct 144719 AGTACAAGATGAAGAGTGGACTCCTTTTGGATATTGTAGTCTGAAAGAGTACGTCCATCT 144660
Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885
|| ||||| || ||||| ||||| || | ||||| || | || | ||||| |||||
Sbjct 144659 TCTAGTTGTTTACCGGCAAAGATTAGCCTCTGCTGATCAGGGGGGATACCCTCTTTGTCT 144600
Query 34886 TTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGACATCAACGGTTATGG 34943
| ||||| || || || || || | ||| | || || || | ||| ||||
Sbjct 144599 TGGATTTTCGCCTTAAC--ATTCTCAATTGTGTCAGAAGGTTCAACCTCCAGGGTGATGG 144542
Query 34944 TCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977
| || || ||||| ||||||||||||||||||||
Sbjct 144541 TTTTCCCGGTGAGAGTCTTTACAAAGATCTGCAT 144508
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 325611634097312
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |