Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Varroa_20destructor_20[genbank_20GCA_5F000181155.2_202017-05-09] 20,448 sequences; 331,927,360 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq7231 136 3e-27 seq19980 104 2e-17 >seq7231 Length=219762 Score = 136 bits (150), Expect = 3e-27 Identities = 158/213 (74%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || |||| ||||| ||||| ||||| |||||||| ||||| || |||| |||| Sbjct 93459 AGCACCAAGTGAAGCGTGCTTTCCTTTTGAATGTTGTAGTCACTGAGTGTGCGACCATCC 93518 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || ||||| ||||||||||| || || ||||||||||| | || | ||||||||||| Sbjct 93519 TCGAGTTGTTTTCCGGCGAAAATGAGACGTTGCTGGTCAGGAGGAATACCCTCCTTGTCC 93578 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | ||||| || ||| | | || | || ||| || || |||| || || ||| Sbjct 93579 TGGATTTTGGCCTTCACGTTTTCAATTGTATCGCTGGGTTCAACCTCAAGTGTGATAGTC 93638 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 || |||||||||||||| || |||||||||||| Sbjct 93639 TTCCCCGTGAGGGTCTTGACGAAGATCTGCATG 93671 Score = 125 bits (138), Expect = 5e-24 Identities = 155/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || || || || | |||||| |||||||| ||||| ||||||||||| |||| | || Sbjct 92815 AGCACGAGATGCAAGGTGCTTTCCTTCTGGATGTTGTAGTCCGATAGCGTGCGACCGTCC 92874 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || ||||| ||||| || ||||| || || || ||||| |||| | ||||| ||||| Sbjct 92875 TCGAGTTGTTTTCCAGCAAAGATGAGACGCTGTTGGTCAGGCGGAATGCCCTCTTTGTCT 92934 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | ||||| ||| ||| | || | || | | ||| || |||| ||||| || Sbjct 92935 TGAATTTTCGCTTTTACGTTCTCAATGGTGTCGCTTGGCTCAACTTCAAGTGTTATTGTT 92994 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 |||||||| ||||| || ||||| |||||||| Sbjct 92995 TTTCCCGTAAGGGTTTTCACAAAAATCTGCAT 93026 Score = 116 bits (128), Expect = 2e-21 Identities = 144/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 34781 GTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCG 34840 ||||| ||||||||||||||||| || ||| |||| |||| |||| || ||||| Sbjct 93246 GTGCTTTCCTTCTGAATGTTATAATCGTTAAGGGTGCGGCCATCCTCCAACTGTTTTCCA 93305 Query 34841 GCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTG 34900 || || |||| ||||||||||| | || | ||||| ||||| | || ||| |||| Sbjct 93306 GCAAAAATCAAACGTTGCTGGTCAGGAGGAATGCCCTCTTTGTCCTGGATCTTTGCTTTG 93365 Query 34901 ACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTC 34960 || | | || | || | |||||| |||| || || ||||| || ||||| ||| Sbjct 93366 ACATTTTCAATTGTGTCGGATGGCTCGACTTCAAGCGTGATCGTCTTGCCGGTGAGAGTC 93425 Query 34961 TTTACAAAGATCTGCAT 34977 || |||||||||||||| Sbjct 93426 TTGACAAAGATCTGCAT 93442 Score = 116 bits (128), Expect = 2e-21 Identities = 141/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 34786 CTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAA 34845 |||||| ||||| ||||| || || ||| | || | || ||||||||||| || || || Sbjct 93707 CTCCTTTTGAATATTATAATCTGAGAGGGTACGGCCGTCTTCCAGTTGCTTGCCAGCAAA 93766 Query 34846 GATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGA 34905 |||||| |||||||| || | || | ||||| || || | |||||| || || Sbjct 93767 GATCAGACGTTGCTGATCCGGAGGGATGCCCTCTTTATCCTGGATTTTTGCCTTCACATT 93826 Query 34906 TGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTAC 34965 | | || | || ||| || || |||| ||| ||||| ||||| ||||| ||||| || Sbjct 93827 TTCAATTGTATCGCTGGGTTCAACTTCAAGGGTGATGGTTTTTCCAGTGAGCGTCTTCAC 93886 Query 34966 AAAGATCTGCAT 34977 |||||||||||| Sbjct 93887 AAAGATCTGCAT 93898 Score = 89.7 bits (98), Expect = 3e-13 Identities = 135/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 34786 CTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAA 34845 ||| ||||||||||||||||| ||||| | || | || || || ||||| || || || Sbjct 100243 CTCTTTCTGAATGTTATAGTCTGATAGCGTTCGGCCGTCTTCAAGCTGCTTGCCAGCAAA 100302 Query 34846 GATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGA 34905 ||| | | |||||| || |||| | || |||||||| | || ||| || ||| Sbjct 100303 GATTAACCTTTGCTGATCGGGCGGAATACCTTCCTTGTCTTGAATCTTTGCCTTAACGTT 100362 Query 34906 TGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTAC 34965 | | || | || | | || || || | || || |||||||| || || || ||||| Sbjct 100363 TTCGATTGTATCGCTAGGTTCAACCTCTAGAGTGATCGTCTTTCCGGTCAGCGTTTTTAC 100422 Query 34966 AAAGATCTGCAT 34977 ||||||||||| Sbjct 100423 GAAGATCTGCAT 100434 Score = 86.0 bits (94), Expect = 4e-12 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 34748 TTTCCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCC 34807 |||||||| | | || || ||||| |||| || ||| ||||||||||||||||| Sbjct 99977 TTTCCTCCGCGGAGTCTGAGCACCAGATGAAGAGTAGACTCTTTCTGAATGTTATAGTCA 100036 Query 34808 GATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGC 34867 ||||| | || |||| || || || || || || || || || | || || || | Sbjct 100037 GATAGAGTACGACCATCTTCGAGCTGTTTACCAGCAAAAATTAGCCTCTGTTGATCAGGA 100096 Query 34868 GGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCG 34927 || | || || ||||| | ||||| |||||| | | || | ||| ||| || Sbjct 100097 GGGATTCCTTCTTTGTCCTGAATTTTGGCCTTGACGTTTTCAATGGTATCACTGGATTCT 100156 Query 34928 ACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || || | || || || || || ||||| ||||| || || |||||||| Sbjct 100157 ACCTCGAGTGTGATAGTTTTGCCTGTGAGCGTCTTCACGAAAATCTGCAT 100206 Score = 84.2 bits (92), Expect = 1e-11 Identities = 148/214 (69%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || || || || | |||| ||| || || || || ||||| || ||| | || | || Sbjct 100451 AGAACAAGATGGAGGGTGGACTCTTTTTGGATATTGTAGTCTGAAAGGGTACGACCGTCT 100510 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || ||||| || ||||| ||||||| | || || ||| | || | || || ||||| Sbjct 100511 TCAAGTTGTTTACCGGCAAAGATCAACCTCTGTTGATCTGGAGGGATACCTTCTTTGTCT 100570 Query 34886 TTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGACATCAACGGTTATGG 34943 | ||||| ||| || || || || | ||| || ||| || || | ||| || | Sbjct 100571 TGGATTTTCGCTTTAAC--ATTCTCAATTGTGTCAGAGGGCTCAACTTCCAGGGTAATAG 100628 Query 34944 TCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 ||||||| || ||||| || || ||||||||||| Sbjct 100629 TCTTTCCGGTAAGGGTTTTCACGAAGATCTGCAT 100662 >seq19980 Length=299602 Score = 104 bits (114), Expect = 2e-17 Identities = 150/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 ||||| ||||| | |||| |||||| ||||| || |||||||| ||| |||| |||| Sbjct 144947 AGGACAAGGTGGAGGGTGGACTCCTTTTGAATATTGTAGTCCGAAAGGGTGCGTCCATCT 144888 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || || ||||||||||| ||||||| || || || || | || | || |||||||| Sbjct 144887 TCAAGCTGCTTTCCGGCAAAGATCAATCTCTGTTGATCGGGGGGAATTCCTTCCTTGTCT 144828 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | || || || ||| | || | ||| | ||| || || | ||| |||||| Sbjct 144827 TGAATCTTGGCCTTTACGTTCTCAATTGTATCAGAAGGCTCCACTTCCAAGGTGATGGTC 144768 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || || || ||||| || || || || ||||| Sbjct 144767 TTCCCAGTAAGGGTTTTGACGAAAATTTGCAT 144736 Score = 87.8 bits (96), Expect = 1e-12 Identities = 149/214 (70%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || || || |||| ||| |||||| || || || ||||| || || | || |||| Sbjct 144719 AGTACAAGATGAAGAGTGGACTCCTTTTGGATATTGTAGTCTGAAAGAGTACGTCCATCT 144660 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || ||||| || ||||| ||||| || | ||||| || | || | ||||| ||||| Sbjct 144659 TCTAGTTGTTTACCGGCAAAGATTAGCCTCTGCTGATCAGGGGGGATACCCTCTTTGTCT 144600 Query 34886 TTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGACATCAACGGTTATGG 34943 | ||||| || || || || || | ||| | || || || | ||| |||| Sbjct 144599 TGGATTTTCGCCTTAAC--ATTCTCAATTGTGTCAGAAGGTTCAACCTCCAGGGTGATGG 144542 Query 34944 TCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 | || || ||||| |||||||||||||||||||| Sbjct 144541 TTTTCCCGGTGAGAGTCTTTACAAAGATCTGCAT 144508 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325611634097312