Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Varroa_20destructor_20[genbank_20GCA_5F000181155.2_202017-05-09]
20,448 sequences; 331,927,360 total letters
Query= NC_022969.1
Length=76217
Score E
Sequences producing significant alignments: (Bits) Value
seq4655 443 1e-119
seq19061 181 5e-41
>seq4655
Length=4343
Score = 443 bits (490), Expect = 1e-119
Identities = 587/821 (71%), Gaps = 28/821 (3%)
Strand=Plus/Minus
Query 66114 CGTCATTCCCACCGGCTCTATCGCTCTGGACGGCGCTCTGGGCATCGGGGGGTACCCGAG 66173
||| || |||||||| || ||||| ||||||| ||| ||||||||||| ||| || |
Sbjct 3771 CGTGATCCCCACCGGGTCCATCGCGCTGGACGCCGCGCTGGGCATCGGCGGGCTGCCCAA 3712
Query 66174 GGGCCGGGTGGTGGAAATCTACGGCCCAGAATCTTCAGGGAAGTCAACTCTGTGTCTCCA 66233
||||||||| || || ||||||||||| || || || || ||| | ||| | || ||
Sbjct 3711 GGGCCGGGTCGTCGAGATCTACGGCCCGGAGTCCTCGGGCAAGACGACTGTCGCGCTGCA 3652
Query 66234 CGCGGTGGCCAATGCGCAGAAGGCCGGTGGCAACGCCGCCTACATCGACGCTGAGCACTC 66293
||| || ||||| || ||| || || ||| ||||| | ||||||||| |||||| |
Sbjct 3651 CGCCGTCGCCAACGCCCAGGCCGCGGGCGGCGTGGCCGCGTTCATCGACGCGGAGCACGC 3592
Query 66294 CCTGGACCCTGAGTACGCCAAGGCGCTCGGTGTGGACCTCGACAACCTCGTGGTGGTTCA 66353
|||||||| |||||||| ||| ||||| |||||| ||| |||||| | || ||
Sbjct 3591 GCTGGACCCGGAGTACGCGAAGAACCTCGGGGTGGACACCGAGAACCTCCTCGTCTCCCA 3532
Query 66354 GCCGGACACTGGCGAGCAGGCCCTGGAGATCGTTGACCTCCTCGTCAAGTCTGGCGAGCT 66413
||||||||| ||||||||||| ||||||||| ||| | || || || |||| |||
Sbjct 3531 GCCGGACACCGGCGAGCAGGCTTTGGAGATCGCGGACATGCTGATCCGCTCGGGCGCGCT 3472
Query 66414 GTCCATCGTCGTCGTTGACTCTGTGGCGGCCCTGGT------------------------ 66449
| || ||||| | ||||| ||||||||||| ||
Sbjct 3471 CGACGTCATCGTCATCGACTCGGTGGCGGCCCTCGTNNNNNNNNNNNNNNNNNNNNCTCG 3412
Query 66450 -GCCGCGCGCCGAGCTCGAAGGCGACATCGGGGACAGTCACGTCGGCCTGCACGCGCGCC 66508
|||| |||||| |||||||||| || |||||||| |||||||||||||| || || |
Sbjct 3411 TGCCGAAGGCCGAGATCGAAGGCGAGATGGGGGACAGCCACGTCGGCCTGCAGGCCCGGC 3352
Query 66509 TCATGTCGCAGGCCATGCGCAAGCTCACCGGCACCATCTCCAGCACCAACACGCTGACGC 66568
||||| ||||| |||| ||| | ||||| || | || | || |||| | ||
Sbjct 3351 TCATGAGCCAGGCGCTGCGGAAGATGACCGGAGCCTTGAACAACTCCGGCACGACGGCGA 3292
Query 66569 TCTGGGTCAACCAGTTGCGCGAGAAGATCGGCAACGTGGGCTACGGCCCGAATGAGACCA 66628
||| |||||||| ||||||||||||||||| ||| | |||||||| |||||||
Sbjct 3291 TCTTCATCAACCAGCTGCGCGAGAAGATCGGC---GTGATGTTCGGCCCGACCGAGACCA 3235
Query 66629 CCACGGGCGGCAAGGCTTTGAGGTTCTACGCCTCAGTCCGCATGGATGTCCGTCGCATCG 66688
|||| ||||||||||| ||| ||||||||||| || || |||| || || || ||||
Sbjct 3234 CCACAGGCGGCAAGGCCCTGAAATTCTACGCCTCGGTGCGTTTGGACGTGCGCCGGATCG 3175
Query 66689 CCACCGAGAAGGAAGGCGATGAGGCTGTCGGCAACCGCACCCGGGTGAAGGTCGTCAAGA 66748
||| ||||| ||| || || || | ||||||||||| |||||| |||||||||
Sbjct 3174 AGACCCTCAAGGACGGCTCCGAAGCGGTGGCGAACCGCACCCGCGTGAAGATCGTCAAGA 3115
Query 66749 ACAAGCTGGCCCCGCCGCACCGCAACGCCGAGTTCTCCGTCGTGTACGGGGAGGGCATCT 66808
||||| | ||||||||| | | || |||||| | || | ||||| ||||||
Sbjct 3114 ACAAGGTCGCCCCGCCGTTCAAACAGGCGGAGTTCGACATCATCTACGGCTCCGGCATCA 3055
Query 66809 CGCGTGAGGTCGAACTCCTCGACCTGGCCGTGTCGCAGGGCCTGGTGAAGAAGTCGGGCG 66868
|| |||| | ||| ||||||| | |||| ||| ||| | ||| ||||| || |
Sbjct 3054 GCCGCGAGGGCTCGCTCATCGACCTCGGCGTGGAGCACGGCATCGTGCGCAAGTCCGGGG 2995
Query 66869 CCTGGTTCAAGTACGGGGACAAGAACGTCGCCCAGGGCAAG 66909
|||||| || ||||| || | | ||| ||||||||||
Sbjct 2994 CCTGGTACACCTACGGCGATGAACAGCTCGGCCAGGGCAAG 2954
>seq19061
Length=15585
Score = 181 bits (200), Expect = 5e-41
Identities = 228/308 (74%), Gaps = 9/308 (3%)
Strand=Plus/Minus
Query 60367 GTCGGCACGCTGACCGCCGACCCCGAGCTGCGGTTCAC-CCAAGGTGGGCAGGCCGTCGC 60425
||||||| |||| ||||| ||||||||||||||||| || | | || |||||||||
Sbjct 14188 GTCGGCAACTTGACGGCCGATCCCGAGCTGCGGTTCACACCGACCGGCGC-GGCCGTCGC 14130
Query 60426 CAACTTCACCGTCGTGTCCAACGAACGCCGCCGCGACGCCCAGGGCAAC---TGGGTCGA 60482
||||||||||||| ||| | || | |||| ||| |||| ||| ||
Sbjct 14129 GAACTTCACCGTCGCGTCGACGCCTCGGACCTTCGACCGTCAGACCAACGAGTGGAAGGA 14070
Query 60483 CGGCGACGCCACATTCCTCCGCTGCACCATCTGGCGCGACGCCGCCGAGAACGTGGCGGA 60542
|||||| || ||| | ||||||| |||||||||||| ||||| ||||||||||| ||
Sbjct 14069 CGGCGAAGCGCTGTTCTTGCGCTGCAACATCTGGCGCGAGGCCGCGGAGAACGTGGCCGA 14010
Query 60543 AAGCCT--CCAGAAAGGCCAGCGCGTCATCGTGCATGGCTACCTCAAGCAGCGCTCCTTC 60600
|| |||| ||| ||||||||||||| ||| |||||||||||||| | |
Sbjct 14009 GTCGCTGACCAGG--GGCGCGCGCGTCATCGTGACCGGCAGGCTCAAGCAGCGCTCGTAC 13952
Query 60601 GAGACCAAGGAAGGCGACAAGCGCACCGTCATCGAGGTGGAGGTAGACGAGATCGGCCCG 60660
|||||| || ||||| ||||| |||||| ||||| | || || ||||||||||| ||
Sbjct 13951 GAGACCCGCGAGGGCGAGAAGCGGACCGTCGTCGAGCTCGAAGTCGACGAGATCGGGCCT 13892
Query 60661 TCGCTGCG 60668
|| |||||
Sbjct 13891 TCCCTGCG 13884
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 243708850177984
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |