Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Varroa_20destructor_20[genbank_20GCA_5F000181155.2_202017-05-09]
20,448 sequences; 331,927,360 total letters
Query= NC_022976.1
Length=75894
Score E
Sequences producing significant alignments: (Bits) Value
seq4655 434 5e-117
seq19061 181 5e-41
>seq4655
Length=4343
Score = 434 bits (480), Expect = 5e-117
Identities = 585/821 (71%), Gaps = 28/821 (3%)
Strand=Plus/Minus
Query 66084 CGTCATTCCCACCGGCTCTATCGCTCTGGACGGCGCTCTGGGCATCGGGGGGTACCCGAG 66143
||| || |||||||| || ||||| ||||||| ||| ||||||||||| ||| || |
Sbjct 3771 CGTGATCCCCACCGGGTCCATCGCGCTGGACGCCGCGCTGGGCATCGGCGGGCTGCCCAA 3712
Query 66144 GGGCCGGGTGGTGGAAATCTACGGCCCAGAATCTTCAGGGAAGTCAACTCTGTGTCTCCA 66203
||||||||| || || ||||||||||| || || || || ||| | ||| | || ||
Sbjct 3711 GGGCCGGGTCGTCGAGATCTACGGCCCGGAGTCCTCGGGCAAGACGACTGTCGCGCTGCA 3652
Query 66204 CGCGGTGGCCAATGCGCAGAAGGCCGGTGGCAACGCCGCCTACATCGACGCTGAGCACTC 66263
||| || ||||| || ||| || || ||| ||||| | ||||||||| |||||| |
Sbjct 3651 CGCCGTCGCCAACGCCCAGGCCGCGGGCGGCGTGGCCGCGTTCATCGACGCGGAGCACGC 3592
Query 66264 CCTGGACCCCGAGTACGCCAAGGCGCTCGGTGTGGACCTCGACAACCTCGTGGTGGTTCA 66323
|||||||| |||||||| ||| ||||| |||||| ||| |||||| | || ||
Sbjct 3591 GCTGGACCCGGAGTACGCGAAGAACCTCGGGGTGGACACCGAGAACCTCCTCGTCTCCCA 3532
Query 66324 GCCGGACACTGGCGAGCAGGCCCTGGAGATCGTTGACCTCCTCGTCAAGTCTGGCGAGCT 66383
||||||||| ||||||||||| ||||||||| ||| | || || || |||| |||
Sbjct 3531 GCCGGACACCGGCGAGCAGGCTTTGGAGATCGCGGACATGCTGATCCGCTCGGGCGCGCT 3472
Query 66384 GTCCATCGTCGTCGTTGACTCTGTGGCGGCCCTGGT------------------------ 66419
| || ||||| | ||||| ||||||||||| ||
Sbjct 3471 CGACGTCATCGTCATCGACTCGGTGGCGGCCCTCGTNNNNNNNNNNNNNNNNNNNNCTCG 3412
Query 66420 -GCCGCGCGCCGAGCTCGAAGGCGACATCGGGGACAGTCACGTCGGCCTGCACGCGCGCC 66478
|||| |||||| |||||||||| || |||||||| |||||||||||||| || || |
Sbjct 3411 TGCCGAAGGCCGAGATCGAAGGCGAGATGGGGGACAGCCACGTCGGCCTGCAGGCCCGGC 3352
Query 66479 TCATGTCGCAGGCCATGCGCAAGCTCACCGGCACCATCTCCAGCACCAACACGCTGACGC 66538
||||| ||||| |||| ||| | ||||| || | || | || |||| | ||
Sbjct 3351 TCATGAGCCAGGCGCTGCGGAAGATGACCGGAGCCTTGAACAACTCCGGCACGACGGCGA 3292
Query 66539 TCTGGGTCAACCAGTTGCGCGAGAAGATCGGCAACGTGGGCTACGGCCCGAATGAGACCA 66598
||| |||||||| ||||||||||||||||| ||| | |||||||| |||||||
Sbjct 3291 TCTTCATCAACCAGCTGCGCGAGAAGATCGGC---GTGATGTTCGGCCCGACCGAGACCA 3235
Query 66599 CCACGGGCGGAAAGGCTTTGAGGTTCTACGCCTCAGTCCGCATGGATGTCCGTCGCATCG 66658
|||| ||||| ||||| ||| ||||||||||| || || |||| || || || ||||
Sbjct 3234 CCACAGGCGGCAAGGCCCTGAAATTCTACGCCTCGGTGCGTTTGGACGTGCGCCGGATCG 3175
Query 66659 CCACCGAGAAGGAAGGCGATGAGGCTGTCGGCAACCGCACCCGGGTGAAAGTCGTCAAGA 66718
||| ||||| ||| || || || | ||||||||||| ||||| |||||||||
Sbjct 3174 AGACCCTCAAGGACGGCTCCGAAGCGGTGGCGAACCGCACCCGCGTGAAGATCGTCAAGA 3115
Query 66719 ACAAGCTGGCCCCGCCGCACCGCAACGCCGAGTTCTCCGTCGTGTACGGGGAGGGCATCT 66778
||||| | ||||||||| | | || |||||| | || | ||||| ||||||
Sbjct 3114 ACAAGGTCGCCCCGCCGTTCAAACAGGCGGAGTTCGACATCATCTACGGCTCCGGCATCA 3055
Query 66779 CGCGTGAGGTCGAACTCCTCGACCTGGCCGTGTCGCAGGGCCTGGTGAAGAAGTCGGGCG 66838
|| |||| | ||| ||||||| | |||| ||| ||| | ||| ||||| || |
Sbjct 3054 GCCGCGAGGGCTCGCTCATCGACCTCGGCGTGGAGCACGGCATCGTGCGCAAGTCCGGGG 2995
Query 66839 CCTGGTTCAAGTACGGGGACAAGAACGTCGCCCAGGGCAAG 66879
|||||| || ||||| || | | ||| ||||||||||
Sbjct 2994 CCTGGTACACCTACGGCGATGAACAGCTCGGCCAGGGCAAG 2954
>seq19061
Length=15585
Score = 181 bits (200), Expect = 5e-41
Identities = 228/308 (74%), Gaps = 9/308 (3%)
Strand=Plus/Minus
Query 60337 GTCGGCACGCTGACCGCCGACCCCGAGCTGCGGTTCAC-CCAAGGTGGGCAGGCCGTCGC 60395
||||||| |||| ||||| ||||||||||||||||| || | | || |||||||||
Sbjct 14188 GTCGGCAACTTGACGGCCGATCCCGAGCTGCGGTTCACACCGACCGGCGC-GGCCGTCGC 14130
Query 60396 CAACTTCACCGTCGTGTCCAACGAACGCCGCCGCGACGCCCAGGGCAAC---TGGGTCGA 60452
||||||||||||| ||| | || | |||| ||| |||| ||| ||
Sbjct 14129 GAACTTCACCGTCGCGTCGACGCCTCGGACCTTCGACCGTCAGACCAACGAGTGGAAGGA 14070
Query 60453 CGGCGACGCCACATTCCTCCGCTGCACCATCTGGCGCGACGCCGCCGAGAACGTGGCGGA 60512
|||||| || ||| | ||||||| |||||||||||| ||||| ||||||||||| ||
Sbjct 14069 CGGCGAAGCGCTGTTCTTGCGCTGCAACATCTGGCGCGAGGCCGCGGAGAACGTGGCCGA 14010
Query 60513 AAGCCT--CCAGAAAGGCCAGCGCGTCATCGTGCATGGCTACCTCAAGCAGCGCTCCTTC 60570
|| |||| ||| ||||||||||||| ||| |||||||||||||| | |
Sbjct 14009 GTCGCTGACCAGG--GGCGCGCGCGTCATCGTGACCGGCAGGCTCAAGCAGCGCTCGTAC 13952
Query 60571 GAGACCAAGGAAGGCGACAAGCGCACCGTCATCGAGGTGGAGGTAGACGAGATCGGCCCG 60630
|||||| || ||||| ||||| |||||| ||||| | || || ||||||||||| ||
Sbjct 13951 GAGACCCGCGAGGGCGAGAAGCGGACCGTCGTCGAGCTCGAAGTCGACGAGATCGGGCCT 13892
Query 60631 TCGCTGCG 60638
|| |||||
Sbjct 13891 TCCCTGCG 13884
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 242675507761440
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |