Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Varroa_20destructor_20[genbank_20GCA_5F000181155.2_202017-05-09]
20,448 sequences; 331,927,360 total letters
Query= NC_022981.1
Length=76323
Score E
Sequences producing significant alignments: (Bits) Value
seq4655 443 1e-119
seq19061 185 4e-42
>seq4655
Length=4343
Score = 443 bits (490), Expect = 1e-119
Identities = 587/821 (71%), Gaps = 28/821 (3%)
Strand=Plus/Minus
Query 66340 CGTCATTCCCACCGGCTCTATCGCTCTGGACGGCGCTCTGGGCATCGGGGGGTACCCGAG 66399
||| || |||||||| || ||||| ||||||| ||| ||||||||||| ||| || |
Sbjct 3771 CGTGATCCCCACCGGGTCCATCGCGCTGGACGCCGCGCTGGGCATCGGCGGGCTGCCCAA 3712
Query 66400 GGGCCGGGTGGTGGAAATCTACGGCCCAGAATCTTCAGGGAAGTCAACTCTGTGTCTCCA 66459
||||||||| || || ||||||||||| || || || || ||| | ||| | || ||
Sbjct 3711 GGGCCGGGTCGTCGAGATCTACGGCCCGGAGTCCTCGGGCAAGACGACTGTCGCGCTGCA 3652
Query 66460 CGCGGTGGCCAATGCGCAGAAGGCCGGTGGCAACGCCGCCTACATCGACGCTGAGCACTC 66519
||| || ||||| || ||| || || ||| ||||| | ||||||||| |||||| |
Sbjct 3651 CGCCGTCGCCAACGCCCAGGCCGCGGGCGGCGTGGCCGCGTTCATCGACGCGGAGCACGC 3592
Query 66520 CCTGGACCCTGAGTACGCCAAGGCGCTCGGTGTGGACCTCGACAACCTCGTGGTGGTTCA 66579
|||||||| |||||||| ||| ||||| |||||| ||| |||||| | || ||
Sbjct 3591 GCTGGACCCGGAGTACGCGAAGAACCTCGGGGTGGACACCGAGAACCTCCTCGTCTCCCA 3532
Query 66580 GCCGGACACTGGCGAGCAGGCCCTGGAGATCGTTGACCTCCTCGTCAAGTCTGGCGAGCT 66639
||||||||| ||||||||||| ||||||||| ||| | || || || |||| |||
Sbjct 3531 GCCGGACACCGGCGAGCAGGCTTTGGAGATCGCGGACATGCTGATCCGCTCGGGCGCGCT 3472
Query 66640 GTCCATCGTCGTCGTTGACTCTGTGGCGGCCCTGGT------------------------ 66675
| || ||||| | ||||| ||||||||||| ||
Sbjct 3471 CGACGTCATCGTCATCGACTCGGTGGCGGCCCTCGTNNNNNNNNNNNNNNNNNNNNCTCG 3412
Query 66676 -GCCGCGCGCCGAGCTCGAAGGCGACATCGGGGACAGTCACGTCGGCCTGCACGCGCGCC 66734
|||| |||||| |||||||||| || |||||||| |||||||||||||| || || |
Sbjct 3411 TGCCGAAGGCCGAGATCGAAGGCGAGATGGGGGACAGCCACGTCGGCCTGCAGGCCCGGC 3352
Query 66735 TCATGTCGCAGGCCATGCGCAAGCTCACCGGCACCATCTCCAGCACCAACACGCTGACGC 66794
||||| ||||| |||| ||| | ||||| || | || | || |||| | ||
Sbjct 3351 TCATGAGCCAGGCGCTGCGGAAGATGACCGGAGCCTTGAACAACTCCGGCACGACGGCGA 3292
Query 66795 TCTGGGTCAACCAGTTGCGCGAGAAGATCGGCAACGTGGGCTACGGCCCGAATGAGACCA 66854
||| |||||||| ||||||||||||||||| ||| | |||||||| |||||||
Sbjct 3291 TCTTCATCAACCAGCTGCGCGAGAAGATCGGC---GTGATGTTCGGCCCGACCGAGACCA 3235
Query 66855 CCACGGGCGGCAAGGCTTTGAGGTTCTACGCCTCAGTCCGCATGGATGTCCGTCGCATCG 66914
|||| ||||||||||| ||| ||||||||||| || || |||| || || || ||||
Sbjct 3234 CCACAGGCGGCAAGGCCCTGAAATTCTACGCCTCGGTGCGTTTGGACGTGCGCCGGATCG 3175
Query 66915 CCACCGAGAAGGAAGGCGATGAGGCTGTCGGCAACCGCACCCGGGTGAAGGTCGTCAAGA 66974
||| ||||| ||| || || || | ||||||||||| |||||| |||||||||
Sbjct 3174 AGACCCTCAAGGACGGCTCCGAAGCGGTGGCGAACCGCACCCGCGTGAAGATCGTCAAGA 3115
Query 66975 ACAAGCTGGCCCCGCCGCACCGCAACGCCGAGTTCTCCGTCGTGTACGGGGAGGGCATCT 67034
||||| | ||||||||| | | || |||||| | || | ||||| ||||||
Sbjct 3114 ACAAGGTCGCCCCGCCGTTCAAACAGGCGGAGTTCGACATCATCTACGGCTCCGGCATCA 3055
Query 67035 CGCGTGAGGTCGAACTCCTCGACCTGGCCGTGTCGCAGGGCCTGGTGAAGAAGTCGGGCG 67094
|| |||| | ||| ||||||| | |||| ||| ||| | ||| ||||| || |
Sbjct 3054 GCCGCGAGGGCTCGCTCATCGACCTCGGCGTGGAGCACGGCATCGTGCGCAAGTCCGGGG 2995
Query 67095 CCTGGTTCAAGTACGGGGACAAGAACGTCGCCCAGGGCAAG 67135
|||||| || ||||| || | | ||| ||||||||||
Sbjct 2994 CCTGGTACACCTACGGCGATGAACAGCTCGGCCAGGGCAAG 2954
>seq19061
Length=15585
Score = 185 bits (204), Expect = 4e-42
Identities = 229/308 (74%), Gaps = 9/308 (3%)
Strand=Plus/Minus
Query 60593 GTCGGCACCCTTACCGCCGACCCCGAGCTGCGGTTCACTTCCGGTGGGCA-GGCCGTCGC 60651
||||||| | | || ||||| ||||||||||||||||| ||| ||| |||||||||
Sbjct 14188 GTCGGCAACTTGACGGCCGATCCCGAGCTGCGGTTCACA-CCGACCGGCGCGGCCGTCGC 14130
Query 60652 CAACTTCACCGTCGTGTCCAACGAACGCCGCCGCGACGCCCAGGGCAAC---TGGGTCGA 60708
||||||||||||| ||| | || | |||| ||| |||| ||| ||
Sbjct 14129 GAACTTCACCGTCGCGTCGACGCCTCGGACCTTCGACCGTCAGACCAACGAGTGGAAGGA 14070
Query 60709 CGGCGACGCCACATTCCTCCGCTGCACCATCTGGCGCGACGCCGCCGAGAACGTAGCGGA 60768
|||||| || ||| | ||||||| |||||||||||| ||||| |||||||| || ||
Sbjct 14069 CGGCGAAGCGCTGTTCTTGCGCTGCAACATCTGGCGCGAGGCCGCGGAGAACGTGGCCGA 14010
Query 60769 AAGCCT--CCAGAAGGGCCAGCGCGTCATCGTGCATGGCTACCTCAAGCAGCGCTCCTTC 60826
|| |||| |||| ||||||||||||| ||| |||||||||||||| | |
Sbjct 14009 GTCGCTGACCAG--GGGCGCGCGCGTCATCGTGACCGGCAGGCTCAAGCAGCGCTCGTAC 13952
Query 60827 GAGACCAGGGAAGGCGACAAGCGCACCGTCATCGAGGTGGAGGTAGACGAGATCGGCCCG 60886
|||||| | || ||||| ||||| |||||| ||||| | || || ||||||||||| ||
Sbjct 13951 GAGACCCGCGAGGGCGAGAAGCGGACCGTCGTCGAGCTCGAAGTCGACGAGATCGGGCCT 13892
Query 60887 TCGCTGCG 60894
|| |||||
Sbjct 13891 TCCCTGCG 13884
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 244047965645952
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