Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Varroa_20destructor_20[genbank_20GCA_5F000181155.2_202017-05-09] 20,448 sequences; 331,927,360 total letters Query= NC_022981.1 Length=76323 Score E Sequences producing significant alignments: (Bits) Value seq4655 443 1e-119 seq19061 185 4e-42 >seq4655 Length=4343 Score = 443 bits (490), Expect = 1e-119 Identities = 587/821 (71%), Gaps = 28/821 (3%) Strand=Plus/Minus Query 66340 CGTCATTCCCACCGGCTCTATCGCTCTGGACGGCGCTCTGGGCATCGGGGGGTACCCGAG 66399 ||| || |||||||| || ||||| ||||||| ||| ||||||||||| ||| || | Sbjct 3771 CGTGATCCCCACCGGGTCCATCGCGCTGGACGCCGCGCTGGGCATCGGCGGGCTGCCCAA 3712 Query 66400 GGGCCGGGTGGTGGAAATCTACGGCCCAGAATCTTCAGGGAAGTCAACTCTGTGTCTCCA 66459 ||||||||| || || ||||||||||| || || || || ||| | ||| | || || Sbjct 3711 GGGCCGGGTCGTCGAGATCTACGGCCCGGAGTCCTCGGGCAAGACGACTGTCGCGCTGCA 3652 Query 66460 CGCGGTGGCCAATGCGCAGAAGGCCGGTGGCAACGCCGCCTACATCGACGCTGAGCACTC 66519 ||| || ||||| || ||| || || ||| ||||| | ||||||||| |||||| | Sbjct 3651 CGCCGTCGCCAACGCCCAGGCCGCGGGCGGCGTGGCCGCGTTCATCGACGCGGAGCACGC 3592 Query 66520 CCTGGACCCTGAGTACGCCAAGGCGCTCGGTGTGGACCTCGACAACCTCGTGGTGGTTCA 66579 |||||||| |||||||| ||| ||||| |||||| ||| |||||| | || || Sbjct 3591 GCTGGACCCGGAGTACGCGAAGAACCTCGGGGTGGACACCGAGAACCTCCTCGTCTCCCA 3532 Query 66580 GCCGGACACTGGCGAGCAGGCCCTGGAGATCGTTGACCTCCTCGTCAAGTCTGGCGAGCT 66639 ||||||||| ||||||||||| ||||||||| ||| | || || || |||| ||| Sbjct 3531 GCCGGACACCGGCGAGCAGGCTTTGGAGATCGCGGACATGCTGATCCGCTCGGGCGCGCT 3472 Query 66640 GTCCATCGTCGTCGTTGACTCTGTGGCGGCCCTGGT------------------------ 66675 | || ||||| | ||||| ||||||||||| || Sbjct 3471 CGACGTCATCGTCATCGACTCGGTGGCGGCCCTCGTNNNNNNNNNNNNNNNNNNNNCTCG 3412 Query 66676 -GCCGCGCGCCGAGCTCGAAGGCGACATCGGGGACAGTCACGTCGGCCTGCACGCGCGCC 66734 |||| |||||| |||||||||| || |||||||| |||||||||||||| || || | Sbjct 3411 TGCCGAAGGCCGAGATCGAAGGCGAGATGGGGGACAGCCACGTCGGCCTGCAGGCCCGGC 3352 Query 66735 TCATGTCGCAGGCCATGCGCAAGCTCACCGGCACCATCTCCAGCACCAACACGCTGACGC 66794 ||||| ||||| |||| ||| | ||||| || | || | || |||| | || Sbjct 3351 TCATGAGCCAGGCGCTGCGGAAGATGACCGGAGCCTTGAACAACTCCGGCACGACGGCGA 3292 Query 66795 TCTGGGTCAACCAGTTGCGCGAGAAGATCGGCAACGTGGGCTACGGCCCGAATGAGACCA 66854 ||| |||||||| ||||||||||||||||| ||| | |||||||| ||||||| Sbjct 3291 TCTTCATCAACCAGCTGCGCGAGAAGATCGGC---GTGATGTTCGGCCCGACCGAGACCA 3235 Query 66855 CCACGGGCGGCAAGGCTTTGAGGTTCTACGCCTCAGTCCGCATGGATGTCCGTCGCATCG 66914 |||| ||||||||||| ||| ||||||||||| || || |||| || || || |||| Sbjct 3234 CCACAGGCGGCAAGGCCCTGAAATTCTACGCCTCGGTGCGTTTGGACGTGCGCCGGATCG 3175 Query 66915 CCACCGAGAAGGAAGGCGATGAGGCTGTCGGCAACCGCACCCGGGTGAAGGTCGTCAAGA 66974 ||| ||||| ||| || || || | ||||||||||| |||||| ||||||||| Sbjct 3174 AGACCCTCAAGGACGGCTCCGAAGCGGTGGCGAACCGCACCCGCGTGAAGATCGTCAAGA 3115 Query 66975 ACAAGCTGGCCCCGCCGCACCGCAACGCCGAGTTCTCCGTCGTGTACGGGGAGGGCATCT 67034 ||||| | ||||||||| | | || |||||| | || | ||||| |||||| Sbjct 3114 ACAAGGTCGCCCCGCCGTTCAAACAGGCGGAGTTCGACATCATCTACGGCTCCGGCATCA 3055 Query 67035 CGCGTGAGGTCGAACTCCTCGACCTGGCCGTGTCGCAGGGCCTGGTGAAGAAGTCGGGCG 67094 || |||| | ||| ||||||| | |||| ||| ||| | ||| ||||| || | Sbjct 3054 GCCGCGAGGGCTCGCTCATCGACCTCGGCGTGGAGCACGGCATCGTGCGCAAGTCCGGGG 2995 Query 67095 CCTGGTTCAAGTACGGGGACAAGAACGTCGCCCAGGGCAAG 67135 |||||| || ||||| || | | ||| |||||||||| Sbjct 2994 CCTGGTACACCTACGGCGATGAACAGCTCGGCCAGGGCAAG 2954 >seq19061 Length=15585 Score = 185 bits (204), Expect = 4e-42 Identities = 229/308 (74%), Gaps = 9/308 (3%) Strand=Plus/Minus Query 60593 GTCGGCACCCTTACCGCCGACCCCGAGCTGCGGTTCACTTCCGGTGGGCA-GGCCGTCGC 60651 ||||||| | | || ||||| ||||||||||||||||| ||| ||| ||||||||| Sbjct 14188 GTCGGCAACTTGACGGCCGATCCCGAGCTGCGGTTCACA-CCGACCGGCGCGGCCGTCGC 14130 Query 60652 CAACTTCACCGTCGTGTCCAACGAACGCCGCCGCGACGCCCAGGGCAAC---TGGGTCGA 60708 ||||||||||||| ||| | || | |||| ||| |||| ||| || Sbjct 14129 GAACTTCACCGTCGCGTCGACGCCTCGGACCTTCGACCGTCAGACCAACGAGTGGAAGGA 14070 Query 60709 CGGCGACGCCACATTCCTCCGCTGCACCATCTGGCGCGACGCCGCCGAGAACGTAGCGGA 60768 |||||| || ||| | ||||||| |||||||||||| ||||| |||||||| || || Sbjct 14069 CGGCGAAGCGCTGTTCTTGCGCTGCAACATCTGGCGCGAGGCCGCGGAGAACGTGGCCGA 14010 Query 60769 AAGCCT--CCAGAAGGGCCAGCGCGTCATCGTGCATGGCTACCTCAAGCAGCGCTCCTTC 60826 || |||| |||| ||||||||||||| ||| |||||||||||||| | | Sbjct 14009 GTCGCTGACCAG--GGGCGCGCGCGTCATCGTGACCGGCAGGCTCAAGCAGCGCTCGTAC 13952 Query 60827 GAGACCAGGGAAGGCGACAAGCGCACCGTCATCGAGGTGGAGGTAGACGAGATCGGCCCG 60886 |||||| | || ||||| ||||| |||||| ||||| | || || ||||||||||| || Sbjct 13951 GAGACCCGCGAGGGCGAGAAGCGGACCGTCGTCGAGCTCGAAGTCGACGAGATCGGGCCT 13892 Query 60887 TCGCTGCG 60894 || ||||| Sbjct 13891 TCCCTGCG 13884 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 244047965645952