Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Varroa_20destructor_20[genbank_20GCA_5F000181155.2_202017-05-09]
20,448 sequences; 331,927,360 total letters
Query= NC_023177.1
Length=124688
Score E
Sequences producing significant alignments: (Bits) Value
seq19980 86.0 5e-12
seq7231 84.2 2e-11
>seq19980
Length=299602
Score = 86.0 bits (94), Expect = 5e-12
Identities = 140/201 (70%), Gaps = 8/201 (4%)
Strand=Plus/Plus
Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615
||||||||||| |||||||| | || || || ||||| ||| | ||| |||| ||
Sbjct 144736 ATGCAAATTTTCGTCAAAACCCTTACTGGGAAGACCATCACCTTGGAAGTGGAGCCTTCT 144795
Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675
||||| | | | ||||| |||||| || || ||||| | ||| |||||
Sbjct 144796 GATACAATTGAGAACGTAAAGGCCAAGATTCAAGACAAGGAAGGAATTCCCCCCGATCAA 144855
Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGA----GGACGCCAAAACAATGGCGGACTA 107731
|||||| | || | ||| || || ||||| || |||||| || | |||||||
Sbjct 144856 CAGAGATTGATCTTTGCCGGAAAGCAGCTTGAAGATGGACGC----ACCCTTTCGGACTA 144911
Query 107732 CAACATTCAAAAGGAGTCTAC 107752
||| |||||||||||||| ||
Sbjct 144912 CAATATTCAAAAGGAGTCCAC 144932
Score = 86.0 bits (94), Expect = 5e-12
Identities = 155/227 (68%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615
||||| |||||||| ||||| | || || ||||| || || | ||| ||| | ||
Sbjct 144964 ATGCAGATTTTTGTTAAAACGCTTACCGGAAAAACGATCACTCTTGAAGTCGAGCCAAGC 145023
Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675
||||| | | | || ||| || ||| || || ||||| | ||| |||||
Sbjct 145024 GATACGATTGAGAACGTTAAAGCCAAAATTCAAGACAAGGAAGGAATTCCCCCCGATCAA 145083
Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735
|| || | |||| || || |||||||| ||||| | || | | |||||||||
Sbjct 145084 CAAAGGTTGATTTTCGCAGGCAAACAGCTCGAGGATGGTCGCACGCTCTCCGACTACAAC 145143
Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGG 107782
|||||||| |||||||| | || ||||| ||||| | ||||| ||
Sbjct 145144 ATTCAAAAAGAGTCTACCCTTCATCTGGTGCTGAGACTCCGAGGAGG 145190
Score = 84.2 bits (92), Expect = 2e-11
Identities = 156/229 (68%), Gaps = 0/229 (0%)
Strand=Plus/Plus
Query 107554 AAATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTG 107613
|||||||||||||||| ||||||||||| || || || || ||| | || |||| ||
Sbjct 144278 AAATGCAAATTTTTGTGAAAACTTTAACCGGAAAGACTATCACCCTTGAGGTGGAGTCTT 144337
Query 107614 GCGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATC 107673
||||| ||| | || || |||||| ||||| || || | ||| || |
Sbjct 144338 CTGATACAATCGAAAATGTCAAGGCGAAGATTCAAGATAAGGAGGGGATTCCCCCAGACC 144397
Query 107674 AGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACA 107733
||||||| | || | ||| ||||||||| |||| |||| || | | || ||||
Sbjct 144398 AGCAGAGGTTAATCTTTGCTGGTAAACAGTTGGAAGACGGACGTACTCTTTCTGATTACA 144457
Query 107734 ACATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGG 107782
|||| || || || || || | || | || ||| | ||||||| ||
Sbjct 144458 ACATCCAGAAAGAATCGACCCTTCATCTTGTCTTGCGTCTGCGAGGTGG 144506
>seq7231
Length=219762
Score = 84.2 bits (92), Expect = 2e-11
Identities = 147/214 (69%), Gaps = 0/214 (0%)
Strand=Plus/Minus
Query 107555 AATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGG 107614
|||||||||||| || || || || || || |||||||| ||| | || ||| |
Sbjct 92384 AATGCAAATTTTCGTTAAGACGTTGACCGGAAAAACCATAACCCTTGAGGTTGAGCCCTC 92325
Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674
||||| ||| | ||||| ||| ||| ||||| |||||| | ||| |||||
Sbjct 92324 GGATACCATCGAAAACGTAAAGGCAAAAATTCAGGATAAGGAAGGCATCCCCCCTGATCA 92265
Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734
|||| | ||||| | || || ||||| || ||||| | || || | || |||||
Sbjct 92264 GCAGCGTCTTATATTCGCTGGAAAACAACTCGAGGATGGACGTACCCTGTCCGATTACAA 92205
Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGTGTTG 107768
||||| || || || || ||||| ||||| ||
Sbjct 92204 TATTCAGAAAGAATCAACTCTGCACTTGGTGCTG 92171
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 398777395912672
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |