Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Varroa_20destructor_20[genbank_20GCA_5F000181155.2_202017-05-09] 20,448 sequences; 331,927,360 total letters Query= NC_023177.1 Length=124688 Score E Sequences producing significant alignments: (Bits) Value seq19980 86.0 5e-12 seq7231 84.2 2e-11 >seq19980 Length=299602 Score = 86.0 bits (94), Expect = 5e-12 Identities = 140/201 (70%), Gaps = 8/201 (4%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||||||||| |||||||| | || || || ||||| ||| | ||| |||| || Sbjct 144736 ATGCAAATTTTCGTCAAAACCCTTACTGGGAAGACCATCACCTTGGAAGTGGAGCCTTCT 144795 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 ||||| | | | ||||| |||||| || || ||||| | ||| ||||| Sbjct 144796 GATACAATTGAGAACGTAAAGGCCAAGATTCAAGACAAGGAAGGAATTCCCCCCGATCAA 144855 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGA----GGACGCCAAAACAATGGCGGACTA 107731 |||||| | || | ||| || || ||||| || |||||| || | ||||||| Sbjct 144856 CAGAGATTGATCTTTGCCGGAAAGCAGCTTGAAGATGGACGC----ACCCTTTCGGACTA 144911 Query 107732 CAACATTCAAAAGGAGTCTAC 107752 ||| |||||||||||||| || Sbjct 144912 CAATATTCAAAAGGAGTCCAC 144932 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| |||||||| ||||| | || || ||||| || || | ||| ||| | || Sbjct 144964 ATGCAGATTTTTGTTAAAACGCTTACCGGAAAAACGATCACTCTTGAAGTCGAGCCAAGC 145023 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 ||||| | | | || ||| || ||| || || ||||| | ||| ||||| Sbjct 145024 GATACGATTGAGAACGTTAAAGCCAAAATTCAAGACAAGGAAGGAATTCCCCCCGATCAA 145083 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 || || | |||| || || |||||||| ||||| | || | | ||||||||| Sbjct 145084 CAAAGGTTGATTTTCGCAGGCAAACAGCTCGAGGATGGTCGCACGCTCTCCGACTACAAC 145143 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGG 107782 |||||||| |||||||| | || ||||| ||||| | ||||| || Sbjct 145144 ATTCAAAAAGAGTCTACCCTTCATCTGGTGCTGAGACTCCGAGGAGG 145190 Score = 84.2 bits (92), Expect = 2e-11 Identities = 156/229 (68%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 107554 AAATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTG 107613 |||||||||||||||| ||||||||||| || || || || ||| | || |||| || Sbjct 144278 AAATGCAAATTTTTGTGAAAACTTTAACCGGAAAGACTATCACCCTTGAGGTGGAGTCTT 144337 Query 107614 GCGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATC 107673 ||||| ||| | || || |||||| ||||| || || | ||| || | Sbjct 144338 CTGATACAATCGAAAATGTCAAGGCGAAGATTCAAGATAAGGAGGGGATTCCCCCAGACC 144397 Query 107674 AGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACA 107733 ||||||| | || | ||| ||||||||| |||| |||| || | | || |||| Sbjct 144398 AGCAGAGGTTAATCTTTGCTGGTAAACAGTTGGAAGACGGACGTACTCTTTCTGATTACA 144457 Query 107734 ACATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGG 107782 |||| || || || || || | || | || ||| | ||||||| || Sbjct 144458 ACATCCAGAAAGAATCGACCCTTCATCTTGTCTTGCGTCTGCGAGGTGG 144506 >seq7231 Length=219762 Score = 84.2 bits (92), Expect = 2e-11 Identities = 147/214 (69%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 107555 AATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGG 107614 |||||||||||| || || || || || || |||||||| ||| | || ||| | Sbjct 92384 AATGCAAATTTTCGTTAAGACGTTGACCGGAAAAACCATAACCCTTGAGGTTGAGCCCTC 92325 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 ||||| ||| | ||||| ||| ||| ||||| |||||| | ||| ||||| Sbjct 92324 GGATACCATCGAAAACGTAAAGGCAAAAATTCAGGATAAGGAAGGCATCCCCCCTGATCA 92265 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 |||| | ||||| | || || ||||| || ||||| | || || | || ||||| Sbjct 92264 GCAGCGTCTTATATTCGCTGGAAAACAACTCGAGGATGGACGTACCCTGTCCGATTACAA 92205 Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGTGTTG 107768 ||||| || || || || ||||| ||||| || Sbjct 92204 TATTCAGAAAGAATCAACTCTGCACTTGGTGCTG 92171 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 398777395912672