Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Varroa_20destructor_20[genbank_20GCA_5F000181155.2_202017-05-09]
20,448 sequences; 331,927,360 total letters
Query= NC_023426.1
Length=245717
Score E
Sequences producing significant alignments: (Bits) Value
seq19980 104 4e-17
seq7231 93.3 7e-14
>seq19980
Length=299602
Score = 104 bits (114), Expect = 4e-17
Identities = 159/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091
|||| || || | ||||| | || |||||||| || ||| |||| || || | | ||
Sbjct 144965 TGCAGATTTTTGTTAAAACGCTTACCGGAAAAACGATCACTCTTGAAGTCGAGCCAAGCG 145024
Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151
|||| ||| | || || ||| ||||| ||| || ||||| ||||| ||||||||||
Sbjct 145025 ATACGATTGAGAACGTTAAAGCCAAAATTCAAGACAAGGAAGGAATTCCCCCCGATCAAC 145084
Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211
|||| | ||||| ||||| ||||| | || ||| | | ||| | | || || || |
Sbjct 145085 AAAGGTTGATTTTCGCAGGCAAACAGCTCGAGGATGGTCGCACGCTCTCCGACTACAACA 145144
Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGT 146258
| |||||||| || || | ||| | || | || | ||||||||
Sbjct 145145 TTCAAAAAGAGTCTACCCTTCATCTGGTGCTGAGACTCCGAGGAGGT 145191
>seq7231
Length=219762
Score = 93.3 bits (102), Expect = 7e-14
Identities = 149/214 (70%), Gaps = 0/214 (0%)
Strand=Plus/Minus
Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091
|||| || || | || || | || |||||||| || || |||| || |||| | ||
Sbjct 93897 TGCAGATCTTTGTGAAGACGCTCACTGGAAAAACCATCACCCTTGAAGTTGAACCCAGCG 93838
Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151
|||| ||| ||||||| || ||||| || |||||| ||||| || || ||||| |
Sbjct 93837 ATACAATTGAAAATGTGAAGGCAAAAATCCAGGATAAAGAGGGCATCCCTCCGGATCAGC 93778
Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211
|| | || || ||||| || || ||| | || || | || | ||||||||||||
Sbjct 93777 AACGTCTGATCTTTGCTGGCAAGCAACTGGAAGACGGCCGTACCCTCTCAGATTATAATA 93718
Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACG 146245
| ||||| || ||||| | ||| | || || ||
Sbjct 93717 TTCAAAAGGAGTCGACACTGCATCTCGTCTTGCG 93684
Score = 87.8 bits (96), Expect = 3e-12
Identities = 134/191 (70%), Gaps = 0/191 (0%)
Strand=Plus/Minus
Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091
|||| || || | ||||| | || ||||||||||| || |||| || || | | ||
Sbjct 93025 TGCAGATTTTTGTGAAAACCCTTACGGGAAAAACAATAACACTTGAAGTTGAGCCAAGCG 92966
Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151
| || ||| | || |||||| ||||| ||| ||||| |||||||| || || ||||
Sbjct 92965 ACACCATTGAGAACGTAAAAGCGAAAATTCAAGACAAAGAGGGCATTCCGCCTGACCAAC 92906
Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211
| | ||||| ||||| || |||||| | || || | | ||| || | || || || |
Sbjct 92905 AGCGTCTCATCTTTGCTGGAAAACAACTCGAGGACGGTCGCACGCTATCGGACTACAACA 92846
Query 146212 TACAAAAAGAA 146222
| || || |||
Sbjct 92845 TCCAGAAGGAA 92835
Score = 86.0 bits (94), Expect = 1e-11
Identities = 137/197 (70%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091
||||||| || | ||||||||||| || ||||| || ||| | || ||||| |
Sbjct 94125 TGCAAATCTTTGTGAAAACATTAACTGGGAAAACTATCACTCTAGACGTAGAGGGATCGG 94066
Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151
| || || | || || || | || || || ||||||||| |||||||| ||||| |
Sbjct 94065 ACACGATCGAGAACGTCAAGACAAAGATCCAGGATAAAGAAGGTATTCCACCAGATCAGC 94006
Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211
| | || ||||| || || || || |||| || | | || | | ||||| ||||
Sbjct 94005 AGCGTCTGATTTTCGCTGGCAAGCAGCTAGAGGACGGTCGCACACTCTCCGATTACAATA 93946
Query 146212 TACAAAAAGAATCGACT 146228
|||| || |||||||||
Sbjct 93945 TACAGAAGGAATCGACT 93929
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 785965455868160
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |