Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Varroa_20destructor_20[genbank_20GCA_5F000181155.2_202017-05-09] 20,448 sequences; 331,927,360 total letters Query= NC_023426.1 Length=245717 Score E Sequences producing significant alignments: (Bits) Value seq19980 104 4e-17 seq7231 93.3 7e-14 >seq19980 Length=299602 Score = 104 bits (114), Expect = 4e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||| || || | ||||| | || |||||||| || ||| |||| || || | | || Sbjct 144965 TGCAGATTTTTGTTAAAACGCTTACCGGAAAAACGATCACTCTTGAAGTCGAGCCAAGCG 145024 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||| ||| | || || ||| ||||| ||| || ||||| ||||| |||||||||| Sbjct 145025 ATACGATTGAGAACGTTAAAGCCAAAATTCAAGACAAGGAAGGAATTCCCCCCGATCAAC 145084 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 |||| | ||||| ||||| ||||| | || ||| | | ||| | | || || || | Sbjct 145085 AAAGGTTGATTTTCGCAGGCAAACAGCTCGAGGATGGTCGCACGCTCTCCGACTACAACA 145144 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGT 146258 | |||||||| || || | ||| | || | || | |||||||| Sbjct 145145 TTCAAAAAGAGTCTACCCTTCATCTGGTGCTGAGACTCCGAGGAGGT 145191 >seq7231 Length=219762 Score = 93.3 bits (102), Expect = 7e-14 Identities = 149/214 (70%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||| || || | || || | || |||||||| || || |||| || |||| | || Sbjct 93897 TGCAGATCTTTGTGAAGACGCTCACTGGAAAAACCATCACCCTTGAAGTTGAACCCAGCG 93838 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||| ||| ||||||| || ||||| || |||||| ||||| || || ||||| | Sbjct 93837 ATACAATTGAAAATGTGAAGGCAAAAATCCAGGATAAAGAGGGCATCCCTCCGGATCAGC 93778 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 || | || || ||||| || || ||| | || || | || | |||||||||||| Sbjct 93777 AACGTCTGATCTTTGCTGGCAAGCAACTGGAAGACGGCCGTACCCTCTCAGATTATAATA 93718 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACG 146245 | ||||| || ||||| | ||| | || || || Sbjct 93717 TTCAAAAGGAGTCGACACTGCATCTCGTCTTGCG 93684 Score = 87.8 bits (96), Expect = 3e-12 Identities = 134/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||| || || | ||||| | || ||||||||||| || |||| || || | | || Sbjct 93025 TGCAGATTTTTGTGAAAACCCTTACGGGAAAAACAATAACACTTGAAGTTGAGCCAAGCG 92966 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 | || ||| | || |||||| ||||| ||| ||||| |||||||| || || |||| Sbjct 92965 ACACCATTGAGAACGTAAAAGCGAAAATTCAAGACAAAGAGGGCATTCCGCCTGACCAAC 92906 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 | | ||||| ||||| || |||||| | || || | | ||| || | || || || | Sbjct 92905 AGCGTCTCATCTTTGCTGGAAAACAACTCGAGGACGGTCGCACGCTATCGGACTACAACA 92846 Query 146212 TACAAAAAGAA 146222 | || || ||| Sbjct 92845 TCCAGAAGGAA 92835 Score = 86.0 bits (94), Expect = 1e-11 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| || | ||||||||||| || ||||| || ||| | || ||||| | Sbjct 94125 TGCAAATCTTTGTGAAAACATTAACTGGGAAAACTATCACTCTAGACGTAGAGGGATCGG 94066 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 | || || | || || || | || || || ||||||||| |||||||| ||||| | Sbjct 94065 ACACGATCGAGAACGTCAAGACAAAGATCCAGGATAAAGAAGGTATTCCACCAGATCAGC 94006 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 | | || ||||| || || || || |||| || | | || | | ||||| |||| Sbjct 94005 AGCGTCTGATTTTCGCTGGCAAGCAGCTAGAGGACGGTCGCACACTCTCCGATTACAATA 93946 Query 146212 TACAAAAAGAATCGACT 146228 |||| || ||||||||| Sbjct 93945 TACAGAAGGAATCGACT 93929 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 785965455868160